Wall clock time and date at job start Tue Mar 31 2020 06:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00307 * 2 1 4 4 H 1.48502 * 109.47081 * 270.00331 * 3 2 1 5 5 H 1.48501 * 109.46810 * 30.00015 * 3 2 1 6 6 H 1.48498 * 109.47125 * 150.00402 * 3 2 1 7 7 C 1.37878 * 119.99673 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00164 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99920 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47056 * 180.02562 * 9 7 2 11 11 C 1.53117 * 109.52094 * 185.00087 * 10 9 7 12 12 C 1.53039 * 109.27618 * 182.43627 * 11 10 9 13 13 N 1.46845 * 109.51900 * 59.18397 * 12 11 10 14 14 C 1.38973 * 111.00109 * 174.15881 * 13 12 11 15 15 C 1.39704 * 120.03873 * 179.97438 * 14 13 12 16 16 N 1.31904 * 120.09103 * 179.97438 * 15 14 13 17 17 C 1.32222 * 120.16461 * 0.02737 * 16 15 14 18 18 C 1.39202 * 120.07165 * 359.97438 * 17 16 15 19 19 C 1.48124 * 120.04332 * 179.97438 * 18 17 16 20 20 N 1.34780 * 119.99813 * 179.97438 * 19 18 17 21 21 O 1.21519 * 120.00404 * 0.02562 * 19 18 17 22 22 N 1.32321 * 120.03500 * 359.97388 * 14 13 12 23 23 C 1.46848 * 111.19900 * 298.25348 * 13 12 11 24 24 C 1.53033 * 109.52234 * 61.74501 * 23 13 12 25 25 H 0.96999 * 119.99610 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47074 * 59.99907 * 9 7 2 27 27 H 1.08995 * 109.47157 * 299.99762 * 9 7 2 28 28 H 1.09003 * 109.57185 * 305.15504 * 10 9 7 29 29 H 1.09010 * 109.50248 * 62.50099 * 11 10 9 30 30 H 1.08993 * 109.50395 * 302.38210 * 11 10 9 31 31 H 1.09002 * 109.46610 * 299.16382 * 12 11 10 32 32 H 1.09004 * 109.46053 * 179.19321 * 12 11 10 33 33 H 1.07999 * 119.95688 * 359.97438 * 15 14 13 34 34 H 1.08007 * 119.96073 * 179.97438 * 17 16 15 35 35 H 0.96995 * 120.00002 * 0.02562 * 20 19 18 36 36 H 0.97003 * 119.99894 * 180.02562 * 20 19 18 37 37 H 1.09001 * 109.46806 * 181.76433 * 23 13 12 38 38 H 1.09004 * 109.46013 * 301.73059 * 23 13 12 39 39 H 1.09003 * 109.50268 * 180.88244 * 24 23 13 40 40 H 1.08999 * 109.50704 * 60.76271 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5469 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6367 -0.0023 11 6 5.5475 -2.6401 0.1229 12 6 6.0564 -4.0820 0.0601 13 7 5.6506 -4.6905 -1.2133 14 6 6.2068 -5.9555 -1.3605 15 6 5.9424 -6.7064 -2.5084 16 7 6.4702 -7.9070 -2.6494 17 6 7.2508 -8.4047 -1.7053 18 6 7.5187 -7.6623 -0.5587 19 6 8.3928 -8.2207 0.4989 20 7 8.6521 -7.5009 1.6085 21 8 8.8769 -9.3273 0.3656 22 7 6.9875 -6.4500 -0.4134 23 6 4.1880 -4.7413 -1.3352 24 6 3.6233 -3.3191 -1.3139 25 1 -0.4849 0.8401 0.0004 26 1 3.8752 -0.6805 0.8889 27 1 3.8745 -0.6802 -0.8911 28 1 3.5859 -3.1787 0.8372 29 1 5.8355 -2.1937 1.0748 30 1 5.9810 -2.0651 -0.6953 31 1 5.6334 -4.6529 0.8866 32 1 7.1439 -4.0868 0.1345 33 1 5.3050 -6.3035 -3.2815 34 1 7.6809 -9.3883 -1.8240 35 1 8.2660 -6.6175 1.7147 36 1 9.2248 -7.8664 2.3008 37 1 3.9183 -5.2252 -2.2740 38 1 3.7737 -5.3091 -0.5020 39 1 2.5365 -3.3580 -1.3886 40 1 4.0265 -2.7548 -2.1547 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575042261.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:07 Heat of formation + Delta-G solvation = 8.671002 kcal Electronic energy + Delta-G solvation = -22722.222720 eV Core-core repulsion = 19343.621081 eV Total energy + Delta-G solvation = -3378.601639 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.148 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.72213 -39.67264 -38.72519 -35.39115 -34.58910 -33.53400 -32.49882 -30.86955 -30.69375 -28.27146 -26.04114 -24.89413 -23.23714 -22.86125 -21.33581 -20.73140 -19.27239 -18.54340 -18.16554 -17.16989 -16.90861 -16.61514 -16.27640 -15.81555 -14.87015 -14.64075 -14.44343 -14.37214 -13.89219 -13.75691 -13.49488 -13.08036 -12.83579 -12.29544 -12.25870 -11.84996 -11.69462 -11.44002 -11.21029 -10.95893 -10.91533 -10.71632 -10.38983 -10.23579 -10.07929 -9.85719 -9.75748 -9.46342 -9.39315 -9.10351 -8.57821 -8.41800 -6.08549 -4.06377 0.10423 0.77945 2.36945 2.89738 3.16838 3.27291 3.35485 3.38138 3.48823 3.86423 4.02016 4.19191 4.41363 4.72283 4.82450 4.99798 5.02455 5.13273 5.21563 5.28415 5.39946 5.54659 5.61179 5.76959 5.82797 5.96787 6.08720 6.14210 6.33452 6.36209 6.50009 6.73006 6.75104 6.84729 6.85944 6.91945 7.05709 7.21188 7.37689 7.43507 7.75267 7.80598 8.48685 8.95691 9.54439 11.04679 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.031795 B = 0.003241 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.418104 B = 8637.237190 C = 9138.570541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.076 4.076 11 C -0.119 4.119 12 C 0.067 3.933 13 N -0.464 5.464 14 C 0.277 3.723 15 C 0.068 3.932 16 N -0.419 5.419 17 C 0.067 3.933 18 C 0.051 3.949 19 C 0.585 3.415 20 N -0.833 5.833 21 O -0.533 6.533 22 N -0.459 5.459 23 C 0.057 3.943 24 C -0.103 4.103 25 H 0.263 0.737 26 H 0.016 0.984 27 H 0.013 0.987 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.179 0.821 34 H 0.180 0.820 35 H 0.413 0.587 36 H 0.407 0.593 37 H 0.080 0.920 38 H 0.048 0.952 39 H 0.089 0.911 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.251 -12.663 -0.451 19.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.091 0.909 9 C -0.045 4.045 10 C -0.094 4.094 11 C -0.157 4.157 12 C -0.060 4.060 13 N -0.181 5.181 14 C 0.038 3.962 15 C -0.100 4.100 16 N -0.132 5.132 17 C -0.092 4.092 18 C -0.091 4.091 19 C 0.367 3.633 20 N -0.396 5.396 21 O -0.409 6.409 22 N -0.182 5.182 23 C -0.068 4.068 24 C -0.141 4.141 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.031 0.969 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.196 0.804 34 H 0.197 0.803 35 H 0.243 0.757 36 H 0.238 0.762 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.107 0.893 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.482 -12.945 -1.033 20.207 hybrid contribution 0.174 0.992 0.886 1.342 sum 15.656 -11.953 -0.147 19.698 Atomic orbital electron populations 1.69914 1.06301 1.26874 1.51199 1.25033 0.94692 0.99149 0.94631 0.86803 0.80347 0.83775 0.78492 1.20336 1.21515 1.19057 1.21129 0.89432 0.94309 1.50681 0.90935 1.19598 0.97153 0.91451 0.96319 1.21109 0.92366 0.99235 0.96724 1.21830 0.97640 0.94065 1.02176 1.22098 1.00793 0.95743 0.87329 1.59123 1.11439 1.12287 1.35277 1.21050 0.93830 0.90149 0.91137 1.23715 0.98927 0.90483 0.96831 1.68542 1.05751 1.11255 1.27633 1.23559 0.95126 1.01277 0.89254 1.21864 0.98844 0.91825 0.96538 1.17677 0.79626 0.84362 0.81625 1.43642 1.52852 1.22165 1.20954 1.90848 1.51760 1.19428 1.78848 1.68276 1.10430 1.11395 1.28142 1.22520 0.81900 1.00807 1.01577 1.21641 1.01794 0.91665 0.98971 0.92766 0.96616 0.96908 0.92010 0.91270 0.91386 0.93188 0.90244 0.80433 0.80345 0.75695 0.76212 0.90127 0.93382 0.89271 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 2 C 0.07 1.84 5.47 -17.82 -0.10 1.75 16 3 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 7 C -0.52 -13.75 9.00 -34.44 -0.31 -14.06 16 8 H 0.07 2.06 7.33 -52.48 -0.38 1.67 16 9 C -0.01 -0.17 3.52 -27.88 -0.10 -0.27 16 10 C -0.08 -1.31 2.20 -90.50 -0.20 -1.51 16 11 C -0.12 -1.69 5.38 -26.65 -0.14 -1.83 16 12 C 0.07 0.82 4.66 -3.83 -0.02 0.80 16 13 N -0.46 -5.72 4.68 -173.08 -0.81 -6.54 16 14 C 0.28 3.28 6.40 -154.90 -0.99 2.29 16 15 C 0.07 0.75 10.35 -16.97 -0.18 0.57 16 16 N -0.42 -4.88 10.48 -12.54 -0.13 -5.01 16 17 C 0.07 0.74 10.76 -17.03 -0.18 0.56 16 18 C 0.05 0.57 6.75 -82.88 -0.56 0.01 16 19 C 0.58 6.31 8.08 -12.20 -0.10 6.21 16 20 N -0.83 -6.24 8.87 30.59 0.27 -5.97 16 21 O -0.53 -7.11 17.17 5.35 0.09 -7.02 16 22 N -0.46 -5.27 8.07 -8.82 -0.07 -5.35 16 23 C 0.06 0.71 5.25 -3.84 -0.02 0.69 16 24 C -0.10 -1.62 5.15 -26.65 -0.14 -1.76 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.02 0.35 7.20 -51.92 -0.37 -0.02 16 27 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.62 8.12 -51.93 -0.42 0.20 16 32 H 0.08 0.91 7.72 -51.93 -0.40 0.51 16 33 H 0.18 1.57 7.15 -52.49 -0.38 1.20 16 34 H 0.18 1.74 7.63 -52.48 -0.40 1.34 16 35 H 0.41 2.74 8.18 -40.82 -0.33 2.41 16 36 H 0.41 2.24 8.93 -40.82 -0.36 1.88 16 37 H 0.08 0.84 6.69 -51.93 -0.35 0.50 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.09 1.57 7.05 -51.93 -0.37 1.21 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 327.00 15.07 4.93 4.93 Total: -1.00 -31.21 327.00 -8.09 -39.31 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.44 Total: 2.06 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -3.03 Total: -6.54 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.03 Total: -49.07 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: 0.09 Total: -7.02 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.21 -8.09 -39.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575042261.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.976 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds