Wall clock time and date at job start Tue Mar 31 2020 06:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00307 * 2 1 4 4 H 1.48502 * 109.47081 * 270.00331 * 3 2 1 5 5 H 1.48501 * 109.46810 * 30.00015 * 3 2 1 6 6 H 1.48498 * 109.47125 * 150.00402 * 3 2 1 7 7 C 1.37878 * 119.99673 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00164 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99920 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47056 * 180.02562 * 9 7 2 11 11 C 1.53117 * 109.52094 * 185.00087 * 10 9 7 12 12 C 1.53039 * 109.27618 * 182.43627 * 11 10 9 13 13 N 1.46845 * 109.51900 * 59.18397 * 12 11 10 14 14 C 1.38973 * 111.00109 * 174.15881 * 13 12 11 15 15 C 1.39704 * 120.03873 * 179.97438 * 14 13 12 16 16 N 1.31904 * 120.09103 * 179.97438 * 15 14 13 17 17 C 1.32222 * 120.16461 * 0.02737 * 16 15 14 18 18 C 1.39202 * 120.07165 * 359.97438 * 17 16 15 19 19 C 1.48124 * 120.04332 * 179.97438 * 18 17 16 20 20 N 1.34780 * 119.99813 * 179.97438 * 19 18 17 21 21 O 1.21519 * 120.00404 * 0.02562 * 19 18 17 22 22 N 1.32321 * 120.03500 * 359.97388 * 14 13 12 23 23 C 1.46848 * 111.19900 * 298.25348 * 13 12 11 24 24 C 1.53033 * 109.52234 * 61.74501 * 23 13 12 25 25 H 0.96999 * 119.99610 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47074 * 59.99907 * 9 7 2 27 27 H 1.08995 * 109.47157 * 299.99762 * 9 7 2 28 28 H 1.09003 * 109.57185 * 305.15504 * 10 9 7 29 29 H 1.09010 * 109.50248 * 62.50099 * 11 10 9 30 30 H 1.08993 * 109.50395 * 302.38210 * 11 10 9 31 31 H 1.09002 * 109.46610 * 299.16382 * 12 11 10 32 32 H 1.09004 * 109.46053 * 179.19321 * 12 11 10 33 33 H 1.07999 * 119.95688 * 359.97438 * 15 14 13 34 34 H 1.08007 * 119.96073 * 179.97438 * 17 16 15 35 35 H 0.96995 * 120.00002 * 0.02562 * 20 19 18 36 36 H 0.97003 * 119.99894 * 180.02562 * 20 19 18 37 37 H 1.09001 * 109.46806 * 181.76433 * 23 13 12 38 38 H 1.09004 * 109.46013 * 301.73059 * 23 13 12 39 39 H 1.09003 * 109.50268 * 180.88244 * 24 23 13 40 40 H 1.08999 * 109.50704 * 60.76271 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5469 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6367 -0.0023 11 6 5.5475 -2.6401 0.1229 12 6 6.0564 -4.0820 0.0601 13 7 5.6506 -4.6905 -1.2133 14 6 6.2068 -5.9555 -1.3605 15 6 5.9424 -6.7064 -2.5084 16 7 6.4702 -7.9070 -2.6494 17 6 7.2508 -8.4047 -1.7053 18 6 7.5187 -7.6623 -0.5587 19 6 8.3928 -8.2207 0.4989 20 7 8.6521 -7.5009 1.6085 21 8 8.8769 -9.3273 0.3656 22 7 6.9875 -6.4500 -0.4134 23 6 4.1880 -4.7413 -1.3352 24 6 3.6233 -3.3191 -1.3139 25 1 -0.4849 0.8401 0.0004 26 1 3.8752 -0.6805 0.8889 27 1 3.8745 -0.6802 -0.8911 28 1 3.5859 -3.1787 0.8372 29 1 5.8355 -2.1937 1.0748 30 1 5.9810 -2.0651 -0.6953 31 1 5.6334 -4.6529 0.8866 32 1 7.1439 -4.0868 0.1345 33 1 5.3050 -6.3035 -3.2815 34 1 7.6809 -9.3883 -1.8240 35 1 8.2660 -6.6175 1.7147 36 1 9.2248 -7.8664 2.3008 37 1 3.9183 -5.2252 -2.2740 38 1 3.7737 -5.3091 -0.5020 39 1 2.5365 -3.3580 -1.3886 40 1 4.0265 -2.7548 -2.1547 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575042261.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:06 Heat of formation + Delta-G solvation = -14.812357 kcal Electronic energy + Delta-G solvation = -22723.241035 eV Core-core repulsion = 19343.621081 eV Total energy + Delta-G solvation = -3379.619954 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.60279 -40.59054 -39.73596 -36.63411 -35.56098 -34.55101 -34.15831 -32.05833 -31.78687 -29.77667 -26.93689 -26.20795 -24.42176 -24.00072 -22.42098 -21.95999 -20.58031 -19.35770 -19.12890 -18.72251 -17.96531 -17.64248 -17.14584 -16.70653 -16.34262 -15.81757 -15.56373 -15.35940 -15.12823 -15.00732 -14.73046 -14.45444 -13.98803 -13.85853 -13.46367 -13.18339 -12.83989 -12.73826 -12.54060 -12.33028 -12.10905 -11.91873 -11.80248 -11.68596 -11.38124 -11.11808 -10.94045 -10.83826 -10.78863 -10.69942 -10.31768 -9.34513 -8.23454 -6.25247 -0.74309 -0.10703 1.38690 1.40397 1.51359 1.53504 2.07208 2.30494 2.40138 2.62755 3.01874 3.12672 3.22310 3.32563 3.85790 3.90220 3.99051 4.02658 4.08661 4.24820 4.34635 4.42980 4.56004 4.68251 4.74914 4.87268 4.91463 5.00679 5.13863 5.24144 5.28641 5.40349 5.46520 5.59644 5.70718 5.73464 5.77824 5.90927 6.09629 6.22297 6.36509 6.57661 6.82945 7.10337 7.38925 8.92981 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.031795 B = 0.003241 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.418104 B = 8637.237190 C = 9138.570541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.002 3.998 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.246 1.246 7 C -0.516 4.516 8 H 0.038 0.962 9 C -0.006 4.006 10 C -0.074 4.074 11 C -0.110 4.110 12 C 0.073 3.927 13 N -0.465 5.465 14 C 0.266 3.734 15 C 0.072 3.928 16 N -0.430 5.430 17 C 0.067 3.933 18 C 0.043 3.957 19 C 0.585 3.415 20 N -0.814 5.814 21 O -0.564 6.564 22 N -0.456 5.456 23 C 0.066 3.934 24 C -0.098 4.098 25 H 0.263 0.737 26 H 0.016 0.984 27 H 0.017 0.983 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.199 0.801 34 H 0.189 0.811 35 H 0.419 0.581 36 H 0.418 0.582 37 H 0.105 0.895 38 H 0.044 0.956 39 H 0.060 0.940 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.596 -12.590 -0.552 21.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.194 4.194 3 Si 0.769 3.231 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.169 1.169 7 C -0.554 4.554 8 H 0.056 0.944 9 C -0.044 4.044 10 C -0.093 4.093 11 C -0.148 4.148 12 C -0.053 4.053 13 N -0.182 5.182 14 C 0.028 3.972 15 C -0.095 4.095 16 N -0.143 5.143 17 C -0.092 4.092 18 C -0.098 4.098 19 C 0.367 3.633 20 N -0.377 5.377 21 O -0.442 6.442 22 N -0.179 5.179 23 C -0.059 4.059 24 C -0.136 4.136 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.216 0.784 34 H 0.206 0.794 35 H 0.251 0.749 36 H 0.251 0.749 37 H 0.123 0.877 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 17.860 -12.871 -1.108 22.043 hybrid contribution -0.603 0.893 0.936 1.427 sum 17.257 -11.978 -0.173 21.008 Atomic orbital electron populations 1.70074 1.08257 1.27822 1.53435 1.25970 0.95480 1.03305 0.94687 0.85742 0.79594 0.78808 0.78995 1.19451 1.21668 1.16916 1.21492 0.92051 0.92882 1.49005 0.94407 1.19567 0.93840 0.94685 0.96261 1.21023 0.94874 0.96255 0.97133 1.21713 0.94611 0.95646 1.02804 1.22027 1.01528 0.94344 0.87435 1.59100 1.10933 1.12834 1.35367 1.21063 0.94375 0.90130 0.91642 1.24043 0.98506 0.90048 0.96910 1.68598 1.06193 1.11627 1.27910 1.23782 0.94651 1.01663 0.89110 1.21949 0.99168 0.91790 0.96880 1.17652 0.79437 0.84115 0.82136 1.43527 1.52047 1.22010 1.20147 1.90838 1.53111 1.20713 1.79559 1.68221 1.10223 1.11407 1.28087 1.22368 0.82290 0.98423 1.02808 1.21484 1.00169 0.93866 0.98091 0.92822 0.96572 0.96452 0.93291 0.90305 0.91216 0.93209 0.88762 0.78422 0.79424 0.74907 0.74906 0.87718 0.93752 0.92172 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.65 13.96 21.45 0.30 -58.35 16 2 C 0.00 0.09 5.47 84.65 0.46 0.56 16 3 Si 0.94 43.06 27.47 68.60 1.88 44.94 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.25 -10.30 6.54 99.48 0.65 -9.65 16 7 C -0.52 -28.00 9.00 25.60 0.23 -27.77 16 8 H 0.04 2.25 7.33 -2.91 -0.02 2.23 16 9 C -0.01 -0.27 3.52 29.85 0.11 -0.16 16 10 C -0.07 -2.51 2.20 -10.71 -0.02 -2.54 16 11 C -0.11 -2.85 5.38 30.65 0.16 -2.68 16 12 C 0.07 1.60 4.66 86.33 0.40 2.01 16 13 N -0.46 -10.30 4.68 -701.50 -3.29 -13.59 16 14 C 0.27 5.64 6.40 133.24 0.85 6.49 16 15 C 0.07 1.40 10.35 85.04 0.88 2.28 16 16 N -0.43 -9.16 10.48 -193.59 -2.03 -11.19 16 17 C 0.07 1.37 10.76 84.87 0.91 2.29 16 18 C 0.04 0.90 6.75 41.80 0.28 1.18 16 19 C 0.58 11.65 8.08 86.87 0.70 12.35 16 20 N -0.81 -10.45 8.87 -175.41 -1.56 -12.00 16 21 O -0.56 -14.41 17.17 -3.78 -0.06 -14.48 16 22 N -0.46 -9.40 8.07 -181.81 -1.47 -10.87 16 23 C 0.07 1.55 5.25 86.32 0.45 2.00 16 24 C -0.10 -3.04 5.15 30.64 0.16 -2.89 16 25 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 26 H 0.02 0.69 7.20 -2.38 -0.02 0.67 16 27 H 0.02 0.73 7.57 -2.39 -0.02 0.71 16 28 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.05 1.11 8.12 -2.39 -0.02 1.09 16 32 H 0.09 1.84 7.72 -2.39 -0.02 1.82 16 33 H 0.20 2.90 7.15 -2.91 -0.02 2.88 16 34 H 0.19 3.42 7.63 -2.91 -0.02 3.40 16 35 H 0.42 4.51 8.18 -92.71 -0.76 3.75 16 36 H 0.42 3.71 8.93 -92.71 -0.83 2.89 16 37 H 0.10 1.94 6.69 -2.39 -0.02 1.93 16 38 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.06 2.20 7.05 -2.39 -0.02 2.18 16 40 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -67.96 327.00 -1.19 -69.16 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -0.56 Total: 13.26 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 5.58 Total: -6.88 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -8.04 Total: -106.00 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.06 Total: -14.48 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.88 Total: 44.94 kcal Total: -67.96 -1.19 -69.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575042261.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.346 kcal (2) G-P(sol) polarization free energy of solvation -67.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds