Wall clock time and date at job start Tue Mar 31 2020 06:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 119.99940 * 2 1 4 4 H 1.48505 * 109.47274 * 269.99901 * 3 2 1 5 5 H 1.48500 * 109.47246 * 29.99888 * 3 2 1 6 6 H 1.48500 * 109.47214 * 150.00218 * 3 2 1 7 7 C 1.38815 * 119.99663 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00416 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99328 * 179.97438 * 7 2 1 10 10 C 1.46506 * 119.99462 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47042 * 204.99934 * 10 9 7 12 12 C 1.53000 * 109.47233 * 300.00642 * 11 10 9 13 13 C 1.52997 * 109.47060 * 299.99657 * 12 11 10 14 14 N 1.46500 * 109.47473 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00270 * 154.99797 * 14 13 12 16 16 O 1.21483 * 119.99665 * 0.02562 * 15 14 13 17 17 C 1.48455 * 120.00056 * 180.02562 * 15 14 13 18 18 C 1.39535 * 120.54778 * 179.97438 * 17 15 14 19 19 C 1.38760 * 118.26343 * 180.02562 * 18 17 15 20 20 N 1.32205 * 119.14662 * 0.02562 * 19 18 17 21 21 C 1.31882 * 121.03543 * 359.97438 * 20 19 18 22 22 N 1.31585 * 121.91982 * 359.71581 * 21 20 19 23 23 C 1.52999 * 109.47317 * 59.99960 * 13 12 11 24 24 C 1.52997 * 109.46949 * 85.00462 * 10 9 7 25 25 H 0.97000 * 120.00212 * 0.02562 * 1 2 3 26 26 H 0.97000 * 120.00259 * 0.02562 * 9 7 2 27 27 H 1.08993 * 109.47068 * 325.00513 * 10 9 7 28 28 H 1.08992 * 109.47063 * 180.02562 * 11 10 9 29 29 H 1.09004 * 109.46733 * 59.99984 * 11 10 9 30 30 H 1.09002 * 109.47398 * 59.99826 * 12 11 10 31 31 H 1.09001 * 109.47194 * 180.02562 * 12 11 10 32 32 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 33 33 H 0.97000 * 119.99491 * 335.00093 * 14 13 12 34 34 H 1.08002 * 120.87007 * 0.03010 * 18 17 15 35 35 H 1.07996 * 120.42679 * 180.02562 * 19 18 17 36 36 H 1.08002 * 119.04030 * 180.02562 * 21 20 19 37 37 H 1.09000 * 109.47486 * 180.02562 * 23 13 12 38 38 H 1.09002 * 109.46716 * 60.00091 * 23 13 12 39 39 H 1.09002 * 109.47153 * 179.97438 * 24 10 9 40 40 H 1.09001 * 109.47289 * 299.99924 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.4995 -2.2588 0.6080 12 6 6.2675 -1.2264 -0.2198 13 6 6.4131 -1.7312 -1.6568 14 7 7.1490 -0.7430 -2.4494 15 6 7.8313 -1.1308 -3.5451 16 8 7.8357 -2.2997 -3.8757 17 6 8.5775 -0.1294 -4.3479 18 6 9.2881 -0.5184 -5.4840 19 6 9.9691 0.4566 -6.1988 20 7 9.9225 1.7106 -5.7827 21 6 9.2410 2.0442 -4.7040 22 7 8.5756 1.1546 -3.9987 23 6 5.0258 -1.9434 -2.2659 24 6 4.2577 -2.9757 -1.4380 25 1 -0.4850 0.8400 -0.0004 26 1 3.8646 -0.3621 -0.0007 27 1 3.5649 -3.2063 0.5886 28 1 6.0446 -3.2026 0.6076 29 1 5.3958 -1.8991 1.6317 30 1 5.7225 -0.2824 -0.2198 31 1 7.2561 -1.0757 0.2138 32 1 6.9581 -2.6752 -1.6568 33 1 7.1452 0.1904 -2.1855 34 1 9.3075 -1.5513 -5.7988 35 1 10.5299 0.1945 -7.0837 36 1 9.2245 3.0784 -4.3932 37 1 5.1295 -2.3034 -3.2895 38 1 4.4808 -0.9994 -2.2659 39 1 4.8031 -3.9195 -1.4381 40 1 3.2693 -3.1268 -1.8720 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026578564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:09 Heat of formation + Delta-G solvation = 20.498209 kcal Electronic energy + Delta-G solvation = -22938.686887 eV Core-core repulsion = 19560.598114 eV Total energy + Delta-G solvation = -3378.088773 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.148 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.53047 -39.85428 -38.18798 -34.95691 -34.24259 -32.79722 -32.46263 -30.72770 -30.42476 -28.29724 -25.77476 -24.74173 -23.29409 -22.43494 -21.99823 -20.81485 -19.13061 -18.16318 -17.96404 -17.76399 -16.13971 -15.88245 -15.82042 -15.66159 -14.86978 -14.65255 -14.39297 -14.11505 -14.08316 -13.88613 -13.57550 -12.71130 -12.47854 -12.31818 -12.05789 -11.81344 -11.38210 -11.23280 -11.11594 -10.93049 -10.84170 -10.69041 -10.43936 -10.16520 -10.15716 -10.06463 -9.86582 -9.64724 -9.53684 -9.02282 -8.87081 -7.24896 -5.76423 -3.10951 0.13338 0.51019 2.53160 2.79881 3.34618 3.36914 3.43768 3.48446 3.57770 3.71735 4.21946 4.48798 4.58327 4.61565 4.89106 5.05100 5.11535 5.20347 5.27416 5.40651 5.52048 5.59659 5.67254 5.81564 5.83734 5.89202 5.94010 5.98959 6.17482 6.33759 6.36051 6.43369 6.46996 6.65807 6.76861 6.85865 6.97869 7.32782 7.57102 7.96829 8.01477 8.43159 9.22175 9.94683 10.14882 11.42310 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.018865 B = 0.004137 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.836592 B = 6766.695285 C = 7629.673024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.880 3.120 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.239 4.239 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.177 3.823 11 C -0.121 4.121 12 C -0.124 4.124 13 C 0.144 3.856 14 N -0.698 5.698 15 C 0.567 3.433 16 O -0.525 6.525 17 C 0.135 3.865 18 C -0.171 4.171 19 C 0.149 3.851 20 N -0.509 5.509 21 C 0.294 3.706 22 N -0.496 5.496 23 C -0.120 4.120 24 C -0.130 4.130 25 H 0.259 0.741 26 H 0.360 0.640 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.410 0.590 34 H 0.162 0.838 35 H 0.177 0.823 36 H 0.203 0.797 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.623 -0.013 -8.249 23.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.711 3.289 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.369 4.369 8 H 0.108 0.892 9 N -0.389 5.389 10 C 0.067 3.933 11 C -0.160 4.160 12 C -0.163 4.163 13 C 0.041 3.959 14 N -0.347 5.347 15 C 0.350 3.650 16 O -0.401 6.401 17 C -0.013 4.013 18 C -0.194 4.194 19 C -0.018 4.018 20 N -0.223 5.223 21 C 0.006 3.994 22 N -0.213 5.213 23 C -0.158 4.158 24 C -0.171 4.171 25 H 0.069 0.931 26 H 0.193 0.807 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.246 0.754 34 H 0.179 0.821 35 H 0.194 0.806 36 H 0.220 0.780 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 21.312 0.001 -8.130 22.810 hybrid contribution 0.502 1.025 -0.283 1.176 sum 21.814 1.026 -8.413 23.403 Atomic orbital electron populations 1.69694 1.05079 1.25699 1.57859 1.24653 0.95179 0.97046 1.02336 0.86617 0.79252 0.85347 0.77715 1.21183 1.21779 1.20384 1.19101 0.80729 0.94637 1.42446 0.89188 1.42837 1.03857 1.01985 1.90230 1.20226 0.90391 0.89359 0.93278 1.21776 0.96687 0.98274 0.99220 1.21764 1.00394 1.00464 0.93632 1.21230 0.92930 0.91684 0.90038 1.46045 1.49220 1.13138 1.26315 1.17784 0.79328 0.86831 0.81090 1.90801 1.62770 1.17160 1.69335 1.21773 0.94533 0.91300 0.93707 1.23022 0.97155 1.03671 0.95518 1.23380 0.93111 0.87542 0.97765 1.68379 1.18511 1.20522 1.14894 1.25037 0.87768 0.99902 0.86661 1.68377 1.19008 1.01706 1.32173 1.21773 0.93914 1.01508 0.98654 1.22083 0.99971 0.96565 0.98452 0.93132 0.80665 0.92365 0.91704 0.91239 0.91185 0.91882 0.89404 0.75416 0.82081 0.80594 0.78026 0.92655 0.90858 0.93183 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.21 13.97 55.49 0.78 -28.43 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.88 21.81 27.73 -169.99 -4.71 17.09 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 7 C -0.24 -6.57 10.41 -15.06 -0.16 -6.72 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 N -0.75 -16.76 4.08 -53.42 -0.22 -16.98 16 10 C 0.18 3.21 3.10 -67.93 -0.21 3.00 16 11 C -0.12 -1.75 5.61 -26.73 -0.15 -1.90 16 12 C -0.12 -1.70 5.22 -26.73 -0.14 -1.84 16 13 C 0.14 2.04 2.45 -67.93 -0.17 1.87 16 14 N -0.70 -9.18 5.07 -54.56 -0.28 -9.46 16 15 C 0.57 7.75 7.79 -12.05 -0.09 7.65 16 16 O -0.53 -8.38 16.09 5.38 0.09 -8.30 16 17 C 0.13 1.57 6.79 -82.64 -0.56 1.00 16 18 C -0.17 -1.57 9.72 -38.91 -0.38 -1.95 16 19 C 0.15 1.14 11.31 -17.20 -0.19 0.94 16 20 N -0.51 -4.68 10.42 -14.60 -0.15 -4.83 16 21 C 0.29 2.68 12.27 -92.26 -1.13 1.55 16 22 N -0.50 -5.43 9.70 -11.14 -0.11 -5.54 16 23 C -0.12 -1.98 5.34 -26.73 -0.14 -2.13 16 24 C -0.13 -2.22 5.61 -26.73 -0.15 -2.37 16 25 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 26 H 0.36 7.95 3.92 -40.82 -0.16 7.79 16 27 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.06 6.51 -51.93 -0.34 0.72 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 33 H 0.41 4.96 7.99 -40.82 -0.33 4.64 16 34 H 0.16 1.29 7.74 -52.49 -0.41 0.89 16 35 H 0.18 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.20 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 1.38 7.60 -51.93 -0.39 0.98 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 329.68 15.07 4.97 4.97 Total: -1.00 -33.12 329.68 -8.62 -41.74 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -5.41 Total: 10.61 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -3.57 Total: -0.88 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: 0.02 Total: -65.24 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.09 Total: -8.30 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.12 -8.62 -41.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026578564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.242 kcal (2) G-P(sol) polarization free energy of solvation -33.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds