Wall clock time and date at job start Tue Mar 31 2020 06:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 119.99940 * 2 1 4 4 H 1.48505 * 109.47274 * 269.99901 * 3 2 1 5 5 H 1.48500 * 109.47246 * 29.99888 * 3 2 1 6 6 H 1.48500 * 109.47214 * 150.00218 * 3 2 1 7 7 C 1.38815 * 119.99663 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00416 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99328 * 179.97438 * 7 2 1 10 10 C 1.46506 * 119.99462 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47042 * 204.99934 * 10 9 7 12 12 C 1.53000 * 109.47233 * 300.00642 * 11 10 9 13 13 C 1.52997 * 109.47060 * 299.99657 * 12 11 10 14 14 N 1.46500 * 109.47473 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00270 * 154.99797 * 14 13 12 16 16 O 1.21483 * 119.99665 * 0.02562 * 15 14 13 17 17 C 1.48455 * 120.00056 * 180.02562 * 15 14 13 18 18 C 1.39535 * 120.54778 * 179.97438 * 17 15 14 19 19 C 1.38760 * 118.26343 * 180.02562 * 18 17 15 20 20 N 1.32205 * 119.14662 * 0.02562 * 19 18 17 21 21 C 1.31882 * 121.03543 * 359.97438 * 20 19 18 22 22 N 1.31585 * 121.91982 * 359.71581 * 21 20 19 23 23 C 1.52999 * 109.47317 * 59.99960 * 13 12 11 24 24 C 1.52997 * 109.46949 * 85.00462 * 10 9 7 25 25 H 0.97000 * 120.00212 * 0.02562 * 1 2 3 26 26 H 0.97000 * 120.00259 * 0.02562 * 9 7 2 27 27 H 1.08993 * 109.47068 * 325.00513 * 10 9 7 28 28 H 1.08992 * 109.47063 * 180.02562 * 11 10 9 29 29 H 1.09004 * 109.46733 * 59.99984 * 11 10 9 30 30 H 1.09002 * 109.47398 * 59.99826 * 12 11 10 31 31 H 1.09001 * 109.47194 * 180.02562 * 12 11 10 32 32 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 33 33 H 0.97000 * 119.99491 * 335.00093 * 14 13 12 34 34 H 1.08002 * 120.87007 * 0.03010 * 18 17 15 35 35 H 1.07996 * 120.42679 * 180.02562 * 19 18 17 36 36 H 1.08002 * 119.04030 * 180.02562 * 21 20 19 37 37 H 1.09000 * 109.47486 * 180.02562 * 23 13 12 38 38 H 1.09002 * 109.46716 * 60.00091 * 23 13 12 39 39 H 1.09002 * 109.47153 * 179.97438 * 24 10 9 40 40 H 1.09001 * 109.47289 * 299.99924 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.4995 -2.2588 0.6080 12 6 6.2675 -1.2264 -0.2198 13 6 6.4131 -1.7312 -1.6568 14 7 7.1490 -0.7430 -2.4494 15 6 7.8313 -1.1308 -3.5451 16 8 7.8357 -2.2997 -3.8757 17 6 8.5775 -0.1294 -4.3479 18 6 9.2881 -0.5184 -5.4840 19 6 9.9691 0.4566 -6.1988 20 7 9.9225 1.7106 -5.7827 21 6 9.2410 2.0442 -4.7040 22 7 8.5756 1.1546 -3.9987 23 6 5.0258 -1.9434 -2.2659 24 6 4.2577 -2.9757 -1.4380 25 1 -0.4850 0.8400 -0.0004 26 1 3.8646 -0.3621 -0.0007 27 1 3.5649 -3.2063 0.5886 28 1 6.0446 -3.2026 0.6076 29 1 5.3958 -1.8991 1.6317 30 1 5.7225 -0.2824 -0.2198 31 1 7.2561 -1.0757 0.2138 32 1 6.9581 -2.6752 -1.6568 33 1 7.1452 0.1904 -2.1855 34 1 9.3075 -1.5513 -5.7988 35 1 10.5299 0.1945 -7.0837 36 1 9.2245 3.0784 -4.3932 37 1 5.1295 -2.3034 -3.2895 38 1 4.4808 -0.9994 -2.2659 39 1 4.8031 -3.9195 -1.4381 40 1 3.2693 -3.1268 -1.8720 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026578564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:09 Heat of formation + Delta-G solvation = -2.355117 kcal Electronic energy + Delta-G solvation = -22939.677881 eV Core-core repulsion = 19560.598114 eV Total energy + Delta-G solvation = -3379.079767 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.28222 -40.93049 -39.47034 -36.33128 -35.13711 -34.43484 -33.17698 -32.53199 -31.70225 -29.73141 -26.67413 -25.44784 -25.19468 -23.68833 -23.19698 -21.88049 -20.36334 -19.83668 -19.25550 -18.70144 -17.21610 -16.81895 -16.58253 -16.52826 -16.48621 -16.12124 -15.62409 -15.35040 -15.12610 -15.04823 -14.64372 -14.44830 -14.08687 -13.75508 -13.41649 -13.08801 -12.94577 -12.60764 -12.33687 -12.09255 -12.06180 -11.96017 -11.85399 -11.83620 -11.49826 -11.34578 -11.19863 -10.88512 -10.85178 -10.43489 -10.14135 -9.25402 -7.99543 -5.30676 -0.64844 -0.12355 1.35274 1.39393 1.46621 1.59213 1.84332 2.49528 2.74351 2.80318 3.15424 3.32022 3.47740 3.65887 3.73136 3.79675 3.86739 4.00915 4.08330 4.30491 4.37175 4.49739 4.55875 4.60772 4.62554 4.63475 4.76461 4.95660 5.10765 5.16028 5.22118 5.25488 5.27142 5.39806 5.47523 5.57637 5.70458 5.83160 6.25437 6.33579 6.84934 6.97272 7.12702 7.90461 8.09297 9.22687 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.018865 B = 0.004137 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.836592 B = 6766.695285 C = 7629.673024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.988 5.988 2 C -0.068 4.068 3 Si 0.948 3.052 4 H -0.284 1.284 5 H -0.298 1.298 6 H -0.246 1.246 7 C -0.220 4.220 8 H 0.055 0.945 9 N -0.745 5.745 10 C 0.168 3.832 11 C -0.112 4.112 12 C -0.119 4.119 13 C 0.153 3.847 14 N -0.694 5.694 15 C 0.566 3.434 16 O -0.554 6.554 17 C 0.112 3.888 18 C -0.171 4.171 19 C 0.160 3.840 20 N -0.519 5.519 21 C 0.290 3.710 22 N -0.512 5.512 23 C -0.113 4.113 24 C -0.124 4.124 25 H 0.255 0.745 26 H 0.365 0.635 27 H 0.047 0.953 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.416 0.584 34 H 0.170 0.830 35 H 0.216 0.784 36 H 0.230 0.770 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.078 0.922 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.243 0.792 -8.584 26.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.640 5.640 2 C -0.259 4.259 3 Si 0.776 3.224 4 H -0.210 1.210 5 H -0.225 1.225 6 H -0.170 1.170 7 C -0.352 4.352 8 H 0.073 0.927 9 N -0.389 5.389 10 C 0.060 3.940 11 C -0.151 4.151 12 C -0.157 4.157 13 C 0.049 3.951 14 N -0.344 5.344 15 C 0.350 3.650 16 O -0.431 6.431 17 C -0.035 4.035 18 C -0.193 4.193 19 C -0.008 4.008 20 N -0.233 5.233 21 C 0.002 3.998 22 N -0.228 5.228 23 C -0.152 4.152 24 C -0.164 4.164 25 H 0.064 0.936 26 H 0.199 0.801 27 H 0.065 0.935 28 H 0.113 0.887 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.253 0.747 34 H 0.188 0.812 35 H 0.232 0.768 36 H 0.246 0.754 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.096 0.904 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 24.992 0.790 -8.451 26.394 hybrid contribution -0.609 0.655 -0.261 0.932 sum 24.383 1.445 -8.712 25.933 Atomic orbital electron populations 1.69886 1.07174 1.26394 1.60496 1.25454 0.96018 1.01058 1.03355 0.85509 0.79030 0.80058 0.77850 1.21012 1.22534 1.16997 1.19063 0.82974 0.93186 1.39948 0.92691 1.42821 1.02081 1.03987 1.90040 1.20488 0.92319 0.87223 0.93974 1.21709 0.94127 1.00232 0.99028 1.21733 1.01654 0.99299 0.93000 1.21058 0.91261 0.92393 0.90350 1.45976 1.48883 1.13249 1.26261 1.18117 0.78993 0.86943 0.80948 1.90776 1.63868 1.18437 1.70045 1.21592 0.95823 0.91411 0.94694 1.23214 0.96709 1.04595 0.94819 1.24013 0.92040 0.86566 0.98140 1.68481 1.18613 1.21220 1.14949 1.25609 0.87037 1.00710 0.86413 1.68347 1.19880 1.01635 1.32981 1.21672 0.95342 0.99784 0.98430 1.21967 0.98838 0.98140 0.97488 0.93600 0.80076 0.93515 0.88703 0.90831 0.92533 0.88831 0.88898 0.74726 0.81220 0.76773 0.75438 0.93434 0.93430 0.90394 0.94488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.92 13.97 21.65 0.30 -63.62 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 3 Si 0.95 45.28 27.73 68.60 1.90 47.18 16 4 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.25 -10.31 6.52 99.48 0.65 -9.66 16 7 C -0.22 -12.41 10.41 84.03 0.87 -11.54 16 8 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 9 N -0.74 -33.25 4.08 -322.94 -1.32 -34.57 16 10 C 0.17 5.95 3.10 44.99 0.14 6.09 16 11 C -0.11 -2.91 5.61 30.60 0.17 -2.74 16 12 C -0.12 -2.86 5.22 30.59 0.16 -2.70 16 13 C 0.15 4.01 2.45 44.99 0.11 4.12 16 14 N -0.69 -17.10 5.07 -444.83 -2.26 -19.36 16 15 C 0.57 14.77 7.79 86.97 0.68 15.45 16 16 O -0.55 -17.12 16.09 -3.66 -0.06 -17.18 16 17 C 0.11 2.42 6.79 41.99 0.29 2.71 16 18 C -0.17 -2.79 9.72 22.71 0.22 -2.57 16 19 C 0.16 1.97 11.31 84.76 0.96 2.92 16 20 N -0.52 -8.11 10.42 -200.09 -2.09 -10.20 16 21 C 0.29 4.61 12.27 180.92 2.22 6.83 16 22 N -0.51 -10.30 9.70 -189.15 -1.84 -12.14 16 23 C -0.11 -3.69 5.34 30.60 0.16 -3.53 16 24 C -0.12 -4.18 5.61 30.60 0.17 -4.01 16 25 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 26 H 0.36 15.56 3.92 -92.71 -0.36 15.20 16 27 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 28 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.06 1.54 6.51 -2.39 -0.02 1.53 16 31 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.09 2.41 7.58 -2.39 -0.02 2.39 16 33 H 0.42 9.30 7.99 -92.71 -0.74 8.56 16 34 H 0.17 2.41 7.74 -2.91 -0.02 2.38 16 35 H 0.22 0.81 8.06 -2.91 -0.02 0.78 16 36 H 0.23 2.07 8.06 -2.91 -0.02 2.05 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.05 1.78 7.60 -2.39 -0.02 1.76 16 39 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -74.18 329.68 1.18 -73.00 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: -0.09 Total: 29.40 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 6.62 Total: 7.48 kcal Atomic # 7 Polarization: -132.69 SS G_CDS: -7.19 Total: -139.88 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.06 Total: -17.18 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.18 kcal Total: -74.18 1.18 -73.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026578564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.648 kcal (2) G-P(sol) polarization free energy of solvation -74.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds