Wall clock time and date at job start Tue Mar 31 2020 06:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 119.99940 * 2 1 4 4 H 1.48505 * 109.47274 * 269.99901 * 3 2 1 5 5 H 1.48500 * 109.47246 * 29.99888 * 3 2 1 6 6 H 1.48500 * 109.47214 * 150.00218 * 3 2 1 7 7 C 1.38815 * 119.99663 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00416 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99328 * 179.97438 * 7 2 1 10 10 C 1.46506 * 119.99462 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47042 * 204.99934 * 10 9 7 12 12 C 1.53000 * 109.47233 * 300.00642 * 11 10 9 13 13 C 1.52997 * 109.47060 * 299.99657 * 12 11 10 14 14 N 1.46500 * 109.47473 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00270 * 154.99797 * 14 13 12 16 16 O 1.21477 * 119.99776 * 0.02562 * 15 14 13 17 17 C 1.48529 * 120.00131 * 180.02562 * 15 14 13 18 18 N 1.32455 * 119.18739 * 359.72437 * 17 15 14 19 19 C 1.32117 * 120.76888 * 179.75716 * 18 17 15 20 20 C 1.38793 * 119.16191 * 0.51441 * 19 18 17 21 21 C 1.38800 * 118.50906 * 359.74556 * 20 19 18 22 22 N 1.32104 * 119.16405 * 0.02562 * 21 20 19 23 23 C 1.52999 * 109.47317 * 59.99960 * 13 12 11 24 24 C 1.52997 * 109.46949 * 85.00462 * 10 9 7 25 25 H 0.97000 * 120.00212 * 0.02562 * 1 2 3 26 26 H 0.97000 * 120.00259 * 0.02562 * 9 7 2 27 27 H 1.08993 * 109.47068 * 325.00513 * 10 9 7 28 28 H 1.08992 * 109.47063 * 180.02562 * 11 10 9 29 29 H 1.09004 * 109.46733 * 59.99984 * 11 10 9 30 30 H 1.09002 * 109.47398 * 59.99826 * 12 11 10 31 31 H 1.09001 * 109.47194 * 180.02562 * 12 11 10 32 32 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 33 33 H 0.97000 * 119.99491 * 335.00093 * 14 13 12 34 34 H 1.08007 * 120.41719 * 180.25942 * 19 18 17 35 35 H 1.08002 * 120.74532 * 179.76395 * 20 19 18 36 36 H 1.08001 * 120.41560 * 180.02562 * 21 20 19 37 37 H 1.09000 * 109.47486 * 180.02562 * 23 13 12 38 38 H 1.09002 * 109.46716 * 60.00091 * 23 13 12 39 39 H 1.09002 * 109.47153 * 179.97438 * 24 10 9 40 40 H 1.09001 * 109.47289 * 299.99924 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.4995 -2.2588 0.6080 12 6 6.2675 -1.2264 -0.2198 13 6 6.4131 -1.7312 -1.6568 14 7 7.1490 -0.7430 -2.4494 15 6 7.8313 -1.1308 -3.5451 16 8 7.8357 -2.2997 -3.8757 17 6 8.5778 -0.1290 -4.3483 18 7 8.5576 1.1421 -3.9763 19 6 9.2144 2.0585 -4.6650 20 6 9.9221 1.6762 -5.7961 21 6 9.9170 0.3366 -6.1594 22 7 9.2425 -0.5277 -5.4225 23 6 5.0258 -1.9434 -2.2659 24 6 4.2577 -2.9757 -1.4380 25 1 -0.4850 0.8400 -0.0004 26 1 3.8646 -0.3621 -0.0007 27 1 3.5649 -3.2063 0.5886 28 1 6.0446 -3.2026 0.6076 29 1 5.3958 -1.8991 1.6317 30 1 5.7225 -0.2824 -0.2198 31 1 7.2561 -1.0757 0.2138 32 1 6.9581 -2.6752 -1.6568 33 1 7.1452 0.1904 -2.1855 34 1 9.1974 3.0927 -4.3541 35 1 10.4649 2.4047 -6.3802 36 1 10.4576 0.0052 -7.0337 37 1 5.1295 -2.3034 -3.2895 38 1 4.4808 -0.9994 -2.2659 39 1 4.8031 -3.9195 -1.4381 40 1 3.2693 -3.1268 -1.8720 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026580921.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:12 Heat of formation + Delta-G solvation = 25.853247 kcal Electronic energy + Delta-G solvation = -22958.320502 eV Core-core repulsion = 19580.463941 eV Total energy + Delta-G solvation = -3377.856561 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.53487 -39.71780 -38.05691 -34.94227 -34.12491 -32.99174 -32.43176 -30.65917 -30.37313 -28.22960 -25.63483 -24.91200 -23.26152 -22.38176 -21.96004 -20.74478 -19.07156 -18.14007 -17.90198 -17.73737 -16.42594 -16.00548 -15.74744 -15.45158 -14.78934 -14.58456 -14.25098 -14.00706 -13.97125 -13.81699 -13.53309 -12.65547 -12.43209 -12.27163 -12.00591 -11.76115 -11.64315 -11.33378 -11.06970 -10.90121 -10.77385 -10.54434 -10.23985 -10.15790 -10.10354 -9.94146 -9.76636 -9.71319 -9.51170 -8.95095 -8.83083 -7.22124 -5.74184 -3.08426 0.09309 0.64345 2.49196 2.66251 3.36248 3.38558 3.44985 3.56371 3.58200 4.02720 4.10868 4.48350 4.58467 4.60375 4.82758 4.97179 5.10412 5.25156 5.31175 5.44540 5.55017 5.64746 5.72191 5.80190 5.86374 5.94318 5.99332 6.04538 6.22774 6.39308 6.47173 6.48304 6.51120 6.70798 6.81397 6.90854 7.02329 7.30247 7.64343 8.04078 8.10082 8.45484 9.24702 9.97228 10.17629 11.44624 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.018961 B = 0.004167 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.388525 B = 6718.390110 C = 7573.700474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.003 3.997 3 Si 0.880 3.120 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.238 4.238 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.177 3.823 11 C -0.121 4.121 12 C -0.124 4.124 13 C 0.147 3.853 14 N -0.700 5.700 15 C 0.581 3.419 16 O -0.505 6.505 17 C 0.287 3.713 18 N -0.494 5.494 19 C 0.146 3.854 20 C -0.212 4.212 21 C 0.145 3.855 22 N -0.469 5.469 23 C -0.121 4.121 24 C -0.130 4.130 25 H 0.258 0.742 26 H 0.360 0.640 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.409 0.591 34 H 0.177 0.823 35 H 0.154 0.846 36 H 0.176 0.824 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.648 3.690 -8.661 24.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.711 3.289 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.368 4.368 8 H 0.108 0.892 9 N -0.389 5.389 10 C 0.067 3.933 11 C -0.160 4.160 12 C -0.162 4.162 13 C 0.044 3.956 14 N -0.352 5.352 15 C 0.362 3.638 16 O -0.377 6.377 17 C 0.017 3.983 18 N -0.211 5.211 19 C -0.020 4.020 20 C -0.234 4.234 21 C -0.022 4.022 22 N -0.184 5.184 23 C -0.159 4.159 24 C -0.171 4.171 25 H 0.068 0.932 26 H 0.193 0.807 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.245 0.755 34 H 0.194 0.806 35 H 0.172 0.828 36 H 0.193 0.807 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 21.872 2.049 -8.324 23.492 hybrid contribution 1.049 2.633 -0.639 2.905 sum 22.921 4.682 -8.962 25.052 Atomic orbital electron populations 1.69696 1.05075 1.25658 1.57973 1.24651 0.95177 0.97034 1.02405 0.86613 0.79257 0.85362 0.77699 1.21199 1.21826 1.20361 1.19108 0.80750 0.94637 1.42289 0.89184 1.42838 1.03843 1.02010 1.90223 1.20230 0.90394 0.89324 0.93306 1.21776 0.96685 0.98311 0.99182 1.21761 1.00384 1.00434 0.93630 1.21211 0.92861 0.91664 0.89911 1.45974 1.49740 1.13118 1.26330 1.17235 0.79358 0.86345 0.80873 1.90812 1.61434 1.16894 1.68539 1.23051 0.94197 0.89498 0.91542 1.68341 1.18864 1.01888 1.32020 1.23343 0.89077 0.99625 0.89969 1.23199 1.01708 0.98956 0.99532 1.23421 0.92373 0.89229 0.97137 1.68276 1.06353 1.39082 1.04657 1.21782 0.93938 1.01470 0.98737 1.22082 0.99973 0.96615 0.98399 0.93165 0.80665 0.92377 0.91677 0.91261 0.91199 0.91863 0.89385 0.75506 0.80637 0.82791 0.80653 0.92593 0.90869 0.93148 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.37 13.97 55.49 0.78 -28.59 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.88 21.90 27.73 -169.99 -4.71 17.18 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 7 C -0.24 -6.58 10.41 -15.06 -0.16 -6.74 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.75 -16.95 4.08 -53.42 -0.22 -17.17 16 10 C 0.18 3.27 3.10 -67.93 -0.21 3.06 16 11 C -0.12 -1.79 5.61 -26.73 -0.15 -1.94 16 12 C -0.12 -1.74 5.22 -26.73 -0.14 -1.88 16 13 C 0.15 2.18 2.45 -67.93 -0.17 2.01 16 14 N -0.70 -9.86 5.07 -54.53 -0.28 -10.14 16 15 C 0.58 9.07 7.82 -12.02 -0.09 8.98 16 16 O -0.50 -9.39 16.53 5.39 0.09 -9.30 16 17 C 0.29 3.91 7.59 -157.08 -1.19 2.71 16 18 N -0.49 -5.58 9.58 -11.12 -0.11 -5.69 16 19 C 0.15 1.09 11.30 -17.22 -0.19 0.89 16 20 C -0.21 -1.23 10.18 -39.17 -0.40 -1.62 16 21 C 0.14 1.16 11.30 -17.23 -0.19 0.96 16 22 N -0.47 -6.04 10.13 -11.12 -0.11 -6.15 16 23 C -0.12 -2.08 5.34 -26.73 -0.14 -2.22 16 24 C -0.13 -2.28 5.61 -26.73 -0.15 -2.43 16 25 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 26 H 0.36 8.03 3.92 -40.82 -0.16 7.87 16 27 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.08 6.51 -51.93 -0.34 0.74 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 33 H 0.41 5.18 7.91 -40.82 -0.32 4.86 16 34 H 0.18 0.68 8.06 -52.48 -0.42 0.26 16 35 H 0.15 0.30 8.06 -52.49 -0.42 -0.12 16 36 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 1.41 7.60 -51.93 -0.39 1.02 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 330.25 15.07 4.98 4.98 Total: -1.00 -35.06 330.25 -8.30 -43.35 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -5.42 Total: 9.74 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -3.29 Total: 1.78 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: 0.06 Total: -67.73 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.18 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.06 -8.30 -43.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026580921.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.208 kcal (2) G-P(sol) polarization free energy of solvation -35.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds