Wall clock time and date at job start Tue Mar 31 2020 07:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47211 * 2 1 4 4 H 1.08991 * 110.00119 * 53.81762 * 3 2 1 5 5 C 1.54340 * 109.98804 * 292.77801 * 3 2 1 6 6 C 1.55152 * 103.01880 * 218.66756 * 5 3 2 7 7 C 1.54909 * 101.58501 * 35.30752 * 6 5 3 8 8 N 1.47023 * 109.88050 * 174.91620 * 3 2 1 9 9 S 1.65600 * 125.65033 * 298.38857 * 8 3 2 10 10 O 1.42098 * 106.40727 * 149.91330 * 9 8 3 11 11 O 1.42108 * 106.40063 * 16.99431 * 9 8 3 12 12 N 1.65600 * 107.22030 * 263.45783 * 9 8 3 13 13 C 1.46497 * 119.99823 * 270.00009 * 12 9 8 14 14 C 1.53006 * 109.46880 * 264.99635 * 13 12 9 15 15 C 1.46501 * 120.00097 * 89.99494 * 12 9 8 16 16 C 1.50696 * 109.47097 * 95.00132 * 15 12 9 17 17 H 1.08002 * 120.00091 * 0.02562 * 16 15 12 18 18 C 1.37880 * 120.00335 * 179.97438 * 16 15 12 19 19 N 1.31509 * 120.00393 * 180.28016 * 18 16 15 20 20 Si 1.86801 * 119.99462 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.46768 * 90.00351 * 20 18 16 22 22 H 1.48498 * 109.46966 * 209.99905 * 20 18 16 23 23 H 1.48497 * 109.47650 * 330.00044 * 20 18 16 24 24 H 1.09002 * 109.46991 * 65.17628 * 1 2 3 25 25 H 1.08992 * 109.47489 * 185.18035 * 1 2 3 26 26 H 1.09008 * 109.47234 * 305.18091 * 1 2 3 27 27 H 1.09000 * 109.47220 * 239.99565 * 2 1 3 28 28 H 1.09002 * 109.47208 * 119.99463 * 2 1 3 29 29 H 1.08998 * 110.84638 * 100.20075 * 5 3 2 30 30 H 1.08998 * 110.66742 * 337.05130 * 5 3 2 31 31 H 1.09007 * 111.00629 * 277.23269 * 6 5 3 32 32 H 1.09000 * 111.00782 * 153.38239 * 6 5 3 33 33 H 1.08998 * 110.37109 * 204.15079 * 7 6 5 34 34 H 1.09006 * 110.36368 * 81.82862 * 7 6 5 35 35 H 1.09001 * 109.47145 * 24.99248 * 13 12 9 36 36 H 1.09000 * 109.47271 * 144.99643 * 13 12 9 37 37 H 1.08997 * 109.47395 * 299.99848 * 14 13 12 38 38 H 1.09000 * 109.47162 * 59.99941 * 14 13 12 39 39 H 1.08994 * 109.47140 * 179.97438 * 14 13 12 40 40 H 1.08999 * 109.47178 * 335.00414 * 15 12 9 41 41 H 1.09003 * 109.47219 * 215.00232 * 15 12 9 42 42 H 0.96999 * 120.00581 * 179.72815 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5942 1.9955 0.8267 5 6 1.6864 2.1271 -1.3373 6 6 2.9444 2.9855 -1.6338 7 6 4.0752 2.0804 -1.0845 8 7 3.5051 1.4548 0.1225 9 16 4.3717 0.8584 1.4014 10 8 5.6161 0.4202 0.8735 11 8 3.4902 0.0077 2.1216 12 7 4.7111 2.1341 2.4012 13 6 5.9403 2.9078 2.2099 14 6 7.0331 2.3657 3.1334 15 6 3.7821 2.4890 3.4770 16 6 4.2237 1.8319 4.7592 17 1 5.1081 1.2122 4.7717 18 6 3.4992 2.0226 5.9167 19 7 3.8877 1.4536 7.0369 20 14 1.9707 3.0962 5.8955 21 1 0.7831 2.2604 5.5848 22 1 1.7940 3.7321 7.2258 23 1 2.1196 4.1494 4.8593 24 1 -0.3633 0.4315 -0.9327 25 1 -0.3634 -1.0234 0.0928 26 1 -0.3634 0.5921 0.8400 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.8051 2.7592 -1.2284 30 1 1.5326 1.3849 -2.1206 31 1 2.9064 3.9331 -1.0963 32 1 3.0614 3.1503 -2.7050 33 1 4.9482 2.6792 -0.8251 34 1 4.3409 1.3184 -1.8173 35 1 6.2656 2.8226 1.1730 36 1 5.7511 3.9549 2.4464 37 1 6.7078 2.4509 4.1703 38 1 7.2223 1.3186 2.8969 39 1 7.9477 2.9410 2.9908 40 1 2.7800 2.1462 3.2194 41 1 3.7736 3.5712 3.6074 42 1 3.3803 1.5910 7.8521 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337097607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:37 Heat of formation + Delta-G solvation = -80.656244 kcal Electronic energy + Delta-G solvation = -23377.623571 eV Core-core repulsion = 20098.299612 eV Total energy + Delta-G solvation = -3279.323959 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.82793 -36.71144 -36.15401 -35.19818 -33.19526 -32.50166 -30.85738 -30.06961 -27.80518 -27.21113 -23.44051 -22.54694 -21.83326 -21.63903 -20.66594 -18.47265 -17.25752 -17.07316 -16.66075 -15.95295 -15.33451 -14.59835 -14.35658 -14.08059 -13.81029 -13.52693 -13.31914 -13.09302 -12.90580 -12.68162 -12.55328 -12.17898 -12.04239 -11.74916 -11.57480 -11.47313 -11.31285 -11.29688 -11.21128 -11.06803 -11.02371 -10.98528 -10.73585 -10.45698 -10.27898 -10.21817 -10.12169 -9.43298 -8.85519 -8.57460 -8.12494 -6.06630 -4.05161 1.09798 3.26853 3.32046 3.33706 3.45521 4.02408 4.39128 4.43320 4.58018 4.80336 4.98267 5.05768 5.20984 5.29355 5.33800 5.36831 5.47736 5.49956 5.59507 5.70936 5.74127 5.78114 5.82874 5.92067 5.97749 6.10457 6.11346 6.13644 6.19497 6.36947 6.44547 6.52434 6.59851 6.66787 6.75525 7.02795 7.15220 7.44596 7.60129 8.51004 8.99029 9.52661 11.06661 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.015560 B = 0.007356 C = 0.006023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.085159 B = 3805.416565 C = 4647.673200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.159 4.159 3 C 0.154 3.846 4 H 0.074 0.926 5 C -0.122 4.122 6 C -0.131 4.131 7 C 0.123 3.877 8 N -1.021 6.021 9 S 2.791 3.209 10 O -0.988 6.988 11 O -0.955 6.955 12 N -0.987 5.987 13 C 0.135 3.865 14 C -0.173 4.173 15 C 0.229 3.771 16 C -0.528 4.528 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.895 5.895 20 Si 0.870 3.130 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.266 1.266 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.027 0.973 41 H 0.031 0.969 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.520 4.634 -17.940 18.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.198 4.198 3 C 0.047 3.953 4 H 0.092 0.908 5 C -0.161 4.161 6 C -0.170 4.170 7 C -0.003 4.003 8 N -0.860 5.860 9 S 2.801 3.199 10 O -0.972 6.972 11 O -0.939 6.939 12 N -0.828 5.828 13 C 0.009 3.991 14 C -0.232 4.232 15 C 0.106 3.894 16 C -0.567 4.567 17 H 0.099 0.901 18 C -0.129 4.129 19 N -0.534 5.534 20 Si 0.697 3.303 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.190 1.190 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.114 0.886 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.045 0.955 41 H 0.049 0.951 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.251 3.685 -17.526 18.202 hybrid contribution -0.896 0.915 0.195 1.296 sum -4.148 4.600 -17.331 18.405 Atomic orbital electron populations 1.21676 0.95169 1.01892 1.01517 1.22291 0.96632 0.96610 1.04252 1.21328 0.79411 0.96301 0.98216 0.90787 1.22700 0.98033 0.98857 0.96536 1.22787 0.94624 0.98527 1.01065 1.21883 0.96185 0.95335 0.86871 1.59519 1.15724 1.77419 1.33295 1.01753 0.72769 0.73676 0.71719 1.93542 1.43461 1.79883 1.80333 1.93589 1.66326 1.63172 1.70799 1.57647 1.29738 1.51401 1.44063 1.20992 0.84191 0.95774 0.98132 1.22264 0.97182 1.00997 1.02773 1.19415 0.87462 0.96582 0.85967 1.21416 1.13168 1.30688 0.91396 0.90060 1.24865 0.97180 0.95487 0.95416 1.69888 1.39824 1.43846 0.99814 0.86959 0.84387 0.81264 0.77727 1.19855 1.21034 1.19036 0.93004 0.92562 0.92405 0.91915 0.88557 0.90456 0.90687 0.90643 0.90359 0.91188 0.91685 0.92182 0.91159 0.89825 0.92767 0.93044 0.95548 0.95077 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.68 37.16 0.36 -1.29 16 2 C -0.16 -2.22 5.42 -26.73 -0.14 -2.37 16 3 C 0.15 2.10 3.05 -66.94 -0.20 1.90 16 4 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 5 C -0.12 -1.19 5.71 -24.89 -0.14 -1.33 16 6 C -0.13 -1.20 7.09 -24.59 -0.17 -1.37 16 7 C 0.12 1.46 7.05 -2.53 -0.02 1.44 16 8 N -1.02 -15.70 3.45 -104.41 -0.36 -16.06 16 9 S 2.79 56.20 6.18 -107.50 -0.66 55.54 16 10 O -0.99 -21.10 16.78 -57.17 -0.96 -22.05 16 11 O -0.95 -22.48 14.27 -57.17 -0.82 -23.29 16 12 N -0.99 -20.21 2.86 -115.66 -0.33 -20.54 16 13 C 0.14 2.35 6.09 -4.04 -0.02 2.33 16 14 C -0.17 -3.19 9.83 37.16 0.37 -2.83 16 15 C 0.23 5.37 4.19 -5.19 -0.02 5.35 16 16 C -0.53 -14.84 8.97 -34.44 -0.31 -15.15 16 17 H 0.08 2.50 7.13 -52.49 -0.37 2.13 16 18 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 19 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 20 Si 0.87 21.00 27.47 -169.99 -4.67 16.33 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 24 H 0.05 0.48 7.65 -51.93 -0.40 0.08 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 27 H 0.06 0.79 8.03 -51.93 -0.42 0.38 16 28 H 0.10 1.68 5.66 -51.93 -0.29 1.38 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.66 7.77 -51.93 -0.40 0.25 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.90 7.60 -51.93 -0.39 0.50 16 36 H 0.07 1.09 8.00 -51.93 -0.42 0.68 16 37 H 0.08 1.77 6.59 -51.93 -0.34 1.43 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.03 0.62 7.04 -51.93 -0.37 0.26 16 41 H 0.03 0.70 7.06 -51.93 -0.37 0.33 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 340.51 15.07 5.13 5.13 Total: -1.00 -33.59 340.51 -9.47 -43.06 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -7.16 Total: -0.15 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -0.41 Total: -11.33 kcal Atomic # 7 Polarization: -63.32 SS G_CDS: 0.08 Total: -63.24 kcal Atomic # 8 Polarization: -43.57 SS G_CDS: -1.78 Total: -45.35 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Atomic # 16 Polarization: 56.20 SS G_CDS: -0.66 Total: 55.54 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.59 -9.47 -43.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337097607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.593 kcal (2) G-P(sol) polarization free energy of solvation -33.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds