Wall clock time and date at job start Tue Mar 31 2020 06:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30853 * 125.41987 * 2 1 4 4 C 1.33318 * 109.68279 * 179.78559 * 3 2 1 5 5 C 1.50704 * 126.10245 * 180.27496 * 4 3 2 6 6 C 1.36653 * 107.78878 * 0.38504 * 4 3 2 7 7 C 1.46762 * 126.84476 * 179.89389 * 6 4 3 8 8 O 1.21685 * 119.99919 * 359.71145 * 7 6 4 9 9 N 1.34778 * 120.00360 * 179.70436 * 7 6 4 10 10 C 1.49064 * 127.54055 * 1.23015 * 9 7 6 11 11 C 1.56017 * 105.20722 * 182.00556 * 10 9 7 12 12 H 1.08999 * 116.89582 * 158.53343 * 11 10 9 13 13 C 1.57079 * 99.60843 * 32.13203 * 11 10 9 14 14 C 1.49291 * 126.94910 * 179.97438 * 9 7 6 15 15 H 1.09005 * 116.14838 * 16.71850 * 14 9 7 16 16 C 1.56013 * 104.87228 * 246.90963 * 14 9 7 17 17 N 1.47869 * 105.10250 * 288.57828 * 16 14 9 18 18 C 1.36939 * 126.94540 * 181.99484 * 17 16 14 19 19 H 1.08003 * 120.00289 * 173.66718 * 18 17 16 20 20 C 1.38815 * 120.00080 * 353.67908 * 18 17 16 21 21 N 1.31625 * 119.99752 * 6.41436 * 20 18 17 22 22 Si 1.86796 * 120.00219 * 186.41538 * 20 18 17 23 23 H 1.48500 * 109.47161 * 94.98192 * 22 20 18 24 24 H 1.48505 * 109.47024 * 214.98554 * 22 20 18 25 25 H 1.48499 * 109.46874 * 334.98067 * 22 20 18 26 26 N 1.34502 * 125.41518 * 180.02562 * 2 1 3 27 27 H 0.96996 * 126.47375 * 359.97438 * 26 2 1 28 28 H 1.08994 * 109.47065 * 269.97021 * 1 2 3 29 29 H 1.09004 * 109.47328 * 29.97148 * 1 2 3 30 30 H 1.09003 * 109.47110 * 149.97080 * 1 2 3 31 31 H 1.08994 * 109.47670 * 270.12812 * 5 4 3 32 32 H 1.09004 * 109.46909 * 30.13128 * 5 4 3 33 33 H 1.09003 * 109.47165 * 150.12349 * 5 4 3 34 34 H 1.08994 * 110.83681 * 62.76581 * 10 9 7 35 35 H 1.09008 * 109.78094 * 300.69401 * 10 9 7 36 36 H 1.09001 * 112.36986 * 191.72066 * 13 11 10 37 37 H 1.08994 * 112.37273 * 64.27366 * 13 11 10 38 38 H 1.08992 * 110.31657 * 47.49000 * 16 14 9 39 39 H 1.09005 * 110.31510 * 169.67646 * 16 14 9 40 40 H 0.96998 * 120.00131 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7048 0.0047 5 6 4.7335 1.6359 0.0121 6 6 3.5975 -0.6609 -0.0009 7 6 4.8028 -1.4983 -0.0008 8 8 5.9038 -0.9800 -0.0006 9 7 4.6903 -2.8414 -0.0008 10 6 3.4369 -3.6478 -0.0263 11 6 3.9054 -5.1345 0.0391 12 1 3.1770 -5.8662 0.3888 13 6 5.2008 -4.9631 0.9110 14 6 5.8043 -3.8352 -0.0013 15 1 6.7867 -3.4557 0.2798 16 6 5.7089 -4.5430 -1.3883 17 7 4.4983 -5.3882 -1.3071 18 6 4.0179 -6.2328 -2.2721 19 1 3.1778 -6.8765 -2.0568 20 6 4.6108 -6.2618 -3.5269 21 7 5.7100 -5.5734 -3.7514 22 14 3.8488 -7.2778 -4.8967 23 1 2.9683 -6.4133 -5.7231 24 1 4.9244 -7.8466 -5.7481 25 1 3.0480 -8.3810 -4.3079 26 7 2.2865 -1.0962 -0.0005 27 1 1.9849 -2.0181 -0.0006 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3634 0.8903 -0.5134 30 1 -0.3633 -0.8897 -0.5143 31 1 5.0223 1.8648 -1.0136 32 1 4.4678 2.5580 0.5291 33 1 5.5676 1.1585 0.5265 34 1 2.8782 -3.4672 -0.9446 35 1 2.8246 -3.4055 0.8424 36 1 5.8165 -5.8625 0.9205 37 1 4.9794 -4.6085 1.9176 38 1 5.6026 -3.8050 -2.1833 39 1 6.5907 -5.1605 -1.5595 40 1 6.1241 -5.5933 -4.6283 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032633607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:28 Heat of formation + Delta-G solvation = 79.919329 kcal Electronic energy + Delta-G solvation = -23842.267605 eV Core-core repulsion = 20466.755525 eV Total energy + Delta-G solvation = -3375.512080 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.21047 -39.95114 -37.76301 -34.00974 -33.18734 -32.30772 -31.30718 -29.28097 -29.00616 -28.74267 -26.47900 -25.30055 -23.65095 -21.91026 -21.22394 -19.94924 -19.73284 -19.01518 -17.71787 -16.61921 -16.00071 -15.88758 -15.69200 -14.97803 -14.49040 -14.04016 -14.01045 -13.48234 -13.35538 -13.06504 -12.96660 -12.52383 -12.36244 -12.26684 -12.04796 -11.95193 -11.80274 -11.48182 -11.15345 -10.99099 -10.92392 -10.74335 -10.39654 -10.26187 -10.17224 -9.90113 -9.75778 -9.56983 -8.79630 -8.42066 -8.04720 -7.05056 -5.88538 -3.23470 1.44424 2.85740 2.91295 3.25312 3.30320 3.34904 3.38362 3.58546 4.25624 4.31570 4.67615 4.84852 4.98145 5.03575 5.14822 5.21679 5.29068 5.36591 5.41689 5.43563 5.60303 5.65444 5.68549 5.82762 5.88988 5.94628 6.06719 6.12729 6.21756 6.28316 6.31802 6.42994 6.53074 6.71663 7.25569 7.29259 7.40344 7.61769 7.85409 7.98317 8.01272 8.43714 8.98483 9.59769 10.28100 11.23775 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.017687 B = 0.005013 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.730544 B = 5583.770060 C = 6082.974589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.228 3.772 3 N -0.497 5.497 4 C 0.088 3.912 5 C -0.073 4.073 6 C -0.077 4.077 7 C 0.608 3.392 8 O -0.536 6.536 9 N -0.608 5.608 10 C 0.074 3.926 11 C 0.144 3.856 12 H 0.110 0.890 13 C -0.152 4.152 14 C 0.101 3.899 15 H 0.117 0.883 16 C 0.172 3.828 17 N -0.596 5.596 18 C -0.239 4.239 19 H 0.081 0.919 20 C -0.002 4.002 21 N -0.915 5.915 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.280 1.280 26 N -0.551 5.551 27 H 0.423 0.577 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.948 6.579 10.099 14.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.036 4.036 3 N -0.219 5.219 4 C -0.046 4.046 5 C -0.131 4.131 6 C -0.193 4.193 7 C 0.397 3.603 8 O -0.414 6.414 9 N -0.342 5.342 10 C -0.051 4.051 11 C 0.035 3.965 12 H 0.127 0.873 13 C -0.191 4.191 14 C -0.001 4.001 15 H 0.134 0.866 16 C 0.047 3.953 17 N -0.320 5.320 18 C -0.367 4.367 19 H 0.099 0.901 20 C -0.199 4.199 21 N -0.560 5.560 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.205 1.205 26 N -0.160 5.160 27 H 0.266 0.734 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.538 7.643 9.806 14.539 hybrid contribution -0.405 -1.807 -0.968 2.089 sum -7.943 5.836 8.838 13.239 Atomic orbital electron populations 1.20270 0.84442 1.04484 1.03792 1.23349 0.95769 0.81800 1.02641 1.70029 1.01659 1.28402 1.21773 1.21004 0.93081 0.90260 1.00277 1.20247 0.93096 0.96796 1.02961 1.20986 0.83907 0.95257 1.19162 1.16395 0.86820 0.80060 0.77008 1.90778 1.25968 1.72218 1.52429 1.49378 1.09518 1.03836 1.71427 1.23657 0.86501 0.95747 0.99242 1.23132 0.94382 0.91046 0.87961 0.87268 1.24194 0.99193 0.98787 0.96967 1.24352 0.90475 0.86018 0.99249 0.86561 1.21967 0.90239 0.92800 0.90320 1.45251 1.26073 1.48994 1.11645 1.19036 1.12755 1.14917 0.89994 0.90080 1.24865 0.97516 0.99918 0.97612 1.69926 1.19221 1.44635 1.22239 0.86115 0.78265 0.79288 0.82145 1.21584 1.21622 1.20499 1.43705 1.06149 1.10570 1.55529 0.73429 0.89802 0.88810 0.90427 0.90903 0.91396 0.89311 0.91012 0.93277 0.89489 0.91556 0.93040 0.92653 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.51 36.01 0.38 -0.21 16 2 C 0.23 3.04 8.12 -155.61 -1.26 1.78 16 3 N -0.50 -7.92 11.20 -6.85 -0.08 -7.99 16 4 C 0.09 1.48 7.15 -82.52 -0.59 0.89 16 5 C -0.07 -1.08 9.88 36.01 0.36 -0.72 16 6 C -0.08 -1.33 6.93 -82.15 -0.57 -1.90 16 7 C 0.61 11.65 7.88 -12.82 -0.10 11.55 16 8 O -0.54 -11.34 15.17 5.20 0.08 -11.26 16 9 N -0.61 -11.09 3.01 -157.28 -0.47 -11.56 16 10 C 0.07 1.19 4.61 -1.01 0.00 1.18 16 11 C 0.14 2.49 5.52 -62.56 -0.35 2.15 16 12 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 13 C -0.15 -2.43 6.80 -22.29 -0.15 -2.58 16 14 C 0.10 1.90 5.19 -62.54 -0.32 1.58 16 15 H 0.12 2.11 8.06 -51.93 -0.42 1.69 16 16 C 0.17 4.00 4.79 -1.68 -0.01 3.99 16 17 N -0.60 -13.69 3.02 -156.36 -0.47 -14.16 16 18 C -0.24 -6.13 10.36 -15.06 -0.16 -6.29 16 19 H 0.08 1.97 7.84 -52.48 -0.41 1.56 16 20 C 0.00 -0.04 5.49 -17.43 -0.10 -0.14 16 21 N -0.91 -26.14 10.61 55.49 0.59 -25.55 16 22 Si 0.91 21.17 29.56 -169.99 -5.02 16.15 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 N -0.55 -7.74 5.79 -7.02 -0.04 -7.78 16 27 H 0.42 5.11 5.33 -40.82 -0.22 4.89 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.38 6.49 -51.93 -0.34 1.04 16 34 H 0.07 1.25 7.54 -51.93 -0.39 0.86 16 35 H 0.05 0.62 7.13 -51.92 -0.37 0.25 16 36 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.05 1.40 7.53 -51.93 -0.39 1.01 16 39 H 0.06 1.42 7.64 -51.93 -0.40 1.02 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 323.88 15.07 4.88 4.88 Total: -1.00 -32.38 323.88 -8.86 -41.25 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.45 Total: 4.75 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: -2.87 Total: 11.28 kcal Atomic # 7 Polarization: -66.57 SS G_CDS: -0.47 Total: -67.04 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.26 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.38 -8.86 -41.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032633607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.167 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds