Wall clock time and date at job start Tue Mar 31 2020 06:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47594 * 2 1 4 4 C 1.53001 * 109.46965 * 120.00387 * 2 1 3 5 5 N 1.46497 * 109.46745 * 294.99136 * 4 2 1 6 6 C 1.36940 * 119.99941 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99982 * 0.02562 * 6 5 4 8 8 C 1.38817 * 120.00042 * 180.02562 * 6 5 4 9 9 N 1.31615 * 120.00143 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99988 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47028 * 89.99710 * 10 8 6 12 12 H 1.48498 * 109.47160 * 209.99990 * 10 8 6 13 13 H 1.48505 * 109.46968 * 329.99883 * 10 8 6 14 14 C 1.53004 * 109.47170 * 239.99628 * 2 1 3 15 15 N 1.46500 * 109.46852 * 64.99925 * 14 2 1 16 16 C 1.34776 * 120.00245 * 179.97438 * 15 14 2 17 17 O 1.21288 * 119.99735 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00335 * 180.02562 * 16 15 14 19 19 C 1.53006 * 112.84824 * 309.66436 * 18 16 15 20 20 C 1.53772 * 113.69313 * 80.93414 * 18 16 15 21 21 C 1.53781 * 87.08354 * 89.13082 * 20 18 16 22 22 F 1.39907 * 113.61149 * 270.88648 * 21 20 18 23 23 F 1.39890 * 113.61735 * 139.98211 * 21 20 18 24 24 C 1.53781 * 113.61440 * 178.47380 * 18 16 15 25 25 H 1.08994 * 109.47360 * 60.00062 * 1 2 3 26 26 H 1.09005 * 109.47544 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46758 * 299.99847 * 1 2 3 28 28 H 1.08994 * 109.47791 * 54.99421 * 4 2 1 29 29 H 1.09003 * 109.46895 * 175.00304 * 4 2 1 30 30 H 0.97003 * 120.00405 * 0.02562 * 5 4 2 31 31 H 0.97002 * 120.00528 * 180.02562 * 9 8 6 32 32 H 1.09006 * 109.47055 * 305.00443 * 14 2 1 33 33 H 1.08994 * 109.47541 * 185.00308 * 14 2 1 34 34 H 0.97002 * 120.00296 * 0.02562 * 15 14 2 35 35 H 1.09001 * 109.46801 * 288.80594 * 19 18 16 36 36 H 1.09001 * 109.46998 * 48.80190 * 19 18 16 37 37 H 1.09000 * 109.47050 * 168.80482 * 19 18 16 38 38 H 1.09000 * 113.61922 * 203.67828 * 20 18 16 39 39 H 1.08999 * 113.61689 * 334.57772 * 20 18 16 40 40 H 1.09000 * 113.61578 * 25.34251 * 24 18 16 41 41 H 1.09003 * 113.61302 * 156.24993 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 2.0011 -0.4208 3.6855 7 1 2.5620 -1.3382 3.7864 8 6 1.6335 0.2959 4.8161 9 7 1.9690 -0.1423 6.0110 10 14 0.6627 1.8823 4.6416 11 1 -0.7907 1.5784 4.6655 12 1 0.9966 2.7932 5.7659 13 1 1.0105 2.5364 3.3546 14 6 2.0400 -0.7213 -1.2492 15 7 1.6524 0.0352 -2.4424 16 6 1.9963 -0.4132 -3.6659 17 8 2.6264 -1.4434 -3.7792 18 6 1.5981 0.3653 -4.8932 19 6 0.1111 0.7253 -4.9119 20 6 2.5238 1.5549 -5.1977 21 6 3.3746 0.5793 -6.0278 22 9 4.3693 -0.0674 -5.2864 23 9 3.8557 1.1301 -7.2203 24 6 2.0974 -0.2583 -6.2072 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6053 -1.7198 1.2952 29 1 3.1263 -0.7995 1.2056 30 1 1.1484 0.8591 2.3517 31 1 1.7118 0.3583 6.8011 32 1 1.6053 -1.7199 -1.2951 33 1 3.1262 -0.7996 -1.2056 34 1 1.1488 0.8593 -2.3518 35 1 -0.4782 -0.1742 -5.0897 36 1 -0.1695 1.1599 -3.9525 37 1 -0.0781 1.4467 -5.7069 38 1 2.0500 2.3359 -5.7924 39 1 3.0381 1.9441 -4.3190 40 1 2.2676 -1.3331 -6.1435 41 1 1.5070 0.0269 -7.0780 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753639229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:15 Heat of formation + Delta-G solvation = -110.795571 kcal Electronic energy + Delta-G solvation = -23578.955555 eV Core-core repulsion = 19744.484271 eV Total energy + Delta-G solvation = -3834.471285 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.155 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.04374 -47.37051 -40.74040 -37.90605 -36.74086 -34.59317 -32.60350 -30.70485 -29.93739 -26.96010 -26.66885 -25.81370 -23.90442 -22.28319 -21.55021 -20.46103 -19.40730 -17.75561 -17.59483 -17.06625 -16.81487 -16.65494 -16.11685 -15.52018 -14.87690 -14.50650 -14.29257 -14.21815 -13.94679 -13.72181 -13.57380 -13.55956 -13.27855 -13.04095 -12.92802 -12.60161 -12.57711 -12.49585 -12.23259 -11.49443 -11.45440 -11.35206 -11.08592 -10.82770 -10.81195 -10.66718 -10.63515 -10.16902 -9.95000 -9.60587 -9.17701 -8.92831 -7.26145 -5.78938 -3.14827 2.32889 2.85793 3.11103 3.33280 3.35202 3.38361 3.41979 3.75212 3.82928 4.00994 4.44993 4.55972 4.72984 4.79741 4.87256 4.91459 5.02325 5.04501 5.15157 5.19782 5.28781 5.37344 5.51192 5.53464 5.60475 5.62736 5.68765 5.82072 5.85369 6.02785 6.17945 6.31906 6.39756 6.62272 6.71043 7.29541 7.97337 8.01162 8.39901 9.18656 9.90632 10.10179 11.39568 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.031364 B = 0.002964 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.516863 B = 9445.210438 C = 9627.391240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 H 0.076 0.924 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.244 4.244 7 H 0.091 0.909 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.290 1.290 13 H -0.278 1.278 14 C 0.126 3.874 15 N -0.720 5.720 16 C 0.530 3.470 17 O -0.523 6.523 18 C -0.107 4.107 19 C -0.132 4.132 20 C -0.151 4.151 21 C 0.254 3.746 22 F -0.167 7.167 23 F -0.192 7.192 24 C -0.144 4.144 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.031 0.969 29 H 0.030 0.970 30 H 0.360 0.640 31 H 0.260 0.740 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.400 0.600 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.123 0.877 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.292 4.844 -27.652 28.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 H 0.094 0.906 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.374 4.374 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.582 5.582 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.003 3.997 15 N -0.372 5.372 16 C 0.314 3.686 17 O -0.398 6.398 18 C -0.111 4.111 19 C -0.189 4.189 20 C -0.189 4.189 21 C 0.218 3.782 22 F -0.147 7.147 23 F -0.173 7.173 24 C -0.182 4.182 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.194 0.806 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.235 0.765 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.142 0.858 39 H 0.116 0.884 40 H 0.127 0.873 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.680 3.926 -27.531 28.052 hybrid contribution -0.687 1.592 0.116 1.738 sum -4.367 5.518 -27.416 28.304 Atomic orbital electron populations 1.21812 0.94743 1.02316 1.01171 1.21609 0.96635 1.00567 0.94588 0.90588 1.20549 0.97248 0.94239 0.84259 1.42682 1.67906 1.27079 1.02349 1.19071 1.29581 1.07066 0.81713 0.89160 1.24679 1.00809 0.98606 0.95094 1.69698 1.51245 1.40312 0.96941 0.86546 0.80427 0.84629 0.76896 1.21060 1.21688 1.20422 1.21436 1.00472 0.95291 0.82498 1.45968 1.57593 1.27853 1.05741 1.19680 0.79528 0.85472 0.83933 1.90750 1.38797 1.23947 1.86329 1.21761 0.98179 0.96821 0.94298 1.21689 0.91340 1.02612 1.03256 1.24214 0.96069 0.97038 1.01571 1.21967 0.84298 0.92890 0.79050 1.93105 1.63726 1.81964 1.75934 1.93006 1.90547 1.86103 1.47599 1.24067 0.93374 1.03291 0.97481 0.93689 0.92291 0.91831 0.95075 0.95241 0.80649 0.93025 0.90983 0.90999 0.76535 0.91049 0.91410 0.90843 0.85845 0.88373 0.87342 0.86296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.94 37.16 0.33 -1.47 16 2 C -0.11 -1.57 2.46 -90.62 -0.22 -1.79 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 4 C 0.16 3.05 5.65 -4.04 -0.02 3.03 16 5 N -0.75 -17.46 5.13 -59.91 -0.31 -17.77 16 6 C -0.24 -6.89 10.47 -15.06 -0.16 -7.05 16 7 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 8 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 9 N -0.93 -29.33 13.97 55.49 0.78 -28.56 16 10 Si 0.88 21.73 27.74 -169.99 -4.71 17.02 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 13 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 14 C 0.13 1.57 5.06 -4.04 -0.02 1.55 16 15 N -0.72 -7.28 5.16 -60.29 -0.31 -7.59 16 16 C 0.53 5.94 6.33 -10.99 -0.07 5.87 16 17 O -0.52 -8.01 14.81 5.55 0.08 -7.93 16 18 C -0.11 -0.80 1.25 -154.85 -0.19 -0.99 16 19 C -0.13 -0.62 9.12 37.16 0.34 -0.28 16 20 C -0.15 -1.01 7.00 -25.92 -0.18 -1.19 16 21 C 0.25 2.45 3.27 -25.92 -0.08 2.36 16 22 F -0.17 -2.22 15.77 2.25 0.04 -2.19 16 23 F -0.19 -1.95 17.41 2.25 0.04 -1.91 16 24 C -0.14 -1.10 6.82 -25.92 -0.18 -1.28 16 25 H 0.04 0.43 7.18 -51.93 -0.37 0.06 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.92 7.18 -51.93 -0.37 0.55 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.36 8.04 4.71 -40.82 -0.19 7.84 16 31 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.40 3.06 6.63 -40.82 -0.27 2.79 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.28 7.08 -51.93 -0.37 -0.08 16 37 H 0.07 0.21 7.94 -51.93 -0.41 -0.20 16 38 H 0.12 0.50 7.96 -51.93 -0.41 0.08 16 39 H 0.10 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.11 1.01 7.41 -51.93 -0.38 0.63 16 41 H 0.12 0.57 8.10 -51.93 -0.42 0.15 16 LS Contribution 338.26 15.07 5.10 5.10 Total: -1.00 -34.28 338.26 -6.04 -40.32 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.18 Total: 4.73 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -0.56 Total: -1.23 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.16 Total: -53.92 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.08 Total: -7.93 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.07 Total: -4.09 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.02 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.28 -6.04 -40.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753639229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.473 kcal (2) G-P(sol) polarization free energy of solvation -34.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds