Wall clock time and date at job start Tue Mar 31 2020 05:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46886 * 2 1 4 4 H 1.09002 * 109.47245 * 305.90641 * 3 2 1 5 5 C 1.52999 * 109.47281 * 65.90619 * 3 2 1 6 6 C 1.50701 * 109.47354 * 187.28964 * 5 3 2 7 7 C 1.38236 * 119.99251 * 261.96471 * 6 5 3 8 8 C 1.38242 * 119.99341 * 179.76278 * 7 6 5 9 9 C 1.38234 * 119.99932 * 0.50849 * 8 7 6 10 10 C 1.38232 * 120.00373 * 359.74637 * 9 8 7 11 11 C 1.38234 * 120.00161 * 82.23599 * 6 5 3 12 12 C 1.50696 * 109.47158 * 185.90531 * 3 2 1 13 13 O 1.20822 * 120.00357 * 239.99982 * 12 3 2 14 14 O 1.34231 * 119.99981 * 59.72655 * 12 3 2 15 15 C 1.45201 * 117.00212 * 180.27586 * 14 12 3 16 16 C 1.52991 * 109.47361 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47283 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.47252 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99872 * 0.02562 * 18 17 16 20 20 C 1.37870 * 120.00086 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00242 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 119.99986 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.46993 * 90.00143 * 22 20 18 24 24 H 1.48502 * 109.47321 * 210.00227 * 22 20 18 25 25 H 1.48506 * 109.47085 * 330.00030 * 22 20 18 26 26 H 1.09001 * 109.46862 * 184.12329 * 1 2 3 27 27 H 1.08998 * 109.47085 * 304.12239 * 1 2 3 28 28 H 1.09000 * 109.47405 * 64.12615 * 1 2 3 29 29 H 1.09000 * 109.47295 * 240.00117 * 2 1 3 30 30 H 1.08991 * 109.47115 * 120.00053 * 2 1 3 31 31 H 1.09003 * 109.47000 * 307.28437 * 5 3 2 32 32 H 1.08995 * 109.47496 * 67.28310 * 5 3 2 33 33 H 1.07992 * 120.00465 * 359.97438 * 7 6 5 34 34 H 1.07996 * 119.99581 * 180.22593 * 8 7 6 35 35 H 1.07999 * 119.99757 * 179.71639 * 9 8 7 36 36 H 1.07999 * 120.00611 * 179.97438 * 10 9 8 37 37 H 1.08000 * 120.00063 * 0.02562 * 11 6 5 38 38 H 1.08995 * 109.46769 * 300.00069 * 15 14 12 39 39 H 1.09003 * 109.47009 * 59.99635 * 15 14 12 40 40 H 1.09000 * 109.47943 * 300.00384 * 16 15 14 41 41 H 1.09003 * 109.46957 * 60.00093 * 16 15 14 42 42 H 1.08995 * 109.47526 * 300.00495 * 17 16 15 43 43 H 1.08997 * 109.46715 * 60.00701 * 17 16 15 44 44 H 0.97003 * 120.00105 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5928 1.9860 -0.8324 5 6 1.6548 2.1197 1.3168 6 6 1.9968 3.5857 1.2467 7 6 3.1742 4.0480 1.8044 8 6 3.4903 5.3921 1.7358 9 6 2.6241 6.2752 1.1188 10 6 1.4442 5.8136 0.5659 11 6 1.1306 4.4688 0.6298 12 6 3.5398 1.4451 -0.1462 13 8 4.2299 1.9379 0.7145 14 8 4.1095 0.8950 -1.2300 15 6 5.5594 0.9280 -1.3012 16 6 6.0218 0.2589 -2.5970 17 6 7.5495 0.2942 -2.6722 18 6 8.0050 -0.3643 -3.9490 19 1 7.2775 -0.7674 -4.6380 20 6 9.3503 -0.4523 -4.2374 21 7 9.7477 -1.0265 -5.3518 22 14 10.6086 0.2442 -3.0453 23 1 11.0023 -0.8058 -2.0718 24 1 11.8065 0.6958 -3.7978 25 1 10.0172 1.3964 -2.3186 26 1 -0.3633 -1.0250 0.0739 27 1 -0.3633 0.5765 0.8507 28 1 -0.3634 0.4485 -0.9246 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.5840 2.0041 1.4851 32 1 2.2035 1.6574 2.1373 33 1 3.8486 3.3588 2.2906 34 1 4.4118 5.7527 2.1682 35 1 2.8689 7.3259 1.0693 36 1 0.7673 6.5036 0.0842 37 1 0.2085 4.1083 0.1983 38 1 5.9004 1.9631 -1.2846 39 1 5.9773 0.3941 -0.4477 40 1 5.6807 -0.7762 -2.6133 41 1 5.6039 0.7925 -3.4506 42 1 7.8903 1.3294 -2.6562 43 1 7.9677 -0.2392 -1.8187 44 1 10.6943 -1.0888 -5.5545 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732855607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:10 Heat of formation + Delta-G solvation = -93.135712 kcal Electronic energy + Delta-G solvation = -22624.030167 eV Core-core repulsion = 19312.261450 eV Total energy + Delta-G solvation = -3311.768717 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.167 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.65848 -39.19187 -36.85251 -35.78116 -34.06323 -32.26245 -31.82273 -30.93213 -28.96438 -27.59177 -25.64694 -23.22918 -22.66512 -22.04952 -21.52953 -20.37741 -19.79309 -17.62425 -17.13930 -16.85092 -16.35527 -15.98828 -15.50835 -14.96769 -14.58632 -14.39857 -14.23459 -13.83240 -13.53693 -13.25642 -13.11764 -12.84729 -12.74137 -12.52948 -12.25512 -12.10828 -11.96970 -11.75068 -11.47217 -11.05402 -11.04037 -11.01216 -10.89185 -10.88670 -10.42715 -10.32544 -9.95579 -9.78206 -9.71065 -9.25097 -8.95685 -8.74762 -8.57191 -6.07406 -4.06395 1.24846 1.36619 2.34400 2.86293 3.29362 3.36977 3.40595 3.69241 4.40584 4.42593 4.51514 4.63135 4.79982 4.86367 4.93754 5.01981 5.09914 5.17410 5.18789 5.25970 5.35985 5.42260 5.46786 5.47601 5.52061 5.63487 5.66556 5.79155 5.84104 5.89075 5.94863 6.02150 6.05132 6.36463 6.39177 6.39767 6.47992 6.59647 6.70920 6.83725 6.96051 7.21338 7.32538 7.72521 7.95079 8.49546 8.96905 9.54207 11.05800 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.016878 B = 0.003302 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.600609 B = 8478.888164 C = 9600.195109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.076 4.076 4 H 0.107 0.893 5 C -0.067 4.067 6 C -0.092 4.092 7 C -0.084 4.084 8 C -0.127 4.127 9 C -0.123 4.123 10 C -0.129 4.129 11 C -0.119 4.119 12 C 0.460 3.540 13 O -0.506 6.506 14 O -0.356 6.356 15 C 0.067 3.933 16 C -0.101 4.101 17 C -0.010 4.010 18 C -0.522 4.522 19 H 0.074 0.926 20 C 0.067 3.933 21 N -0.902 5.902 22 Si 0.879 3.121 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.265 1.265 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.133 0.867 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.018 0.982 43 H 0.014 0.986 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.920 9.245 15.177 27.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.095 4.095 4 H 0.125 0.875 5 C -0.104 4.104 6 C -0.092 4.092 7 C -0.102 4.102 8 C -0.145 4.145 9 C -0.141 4.141 10 C -0.147 4.147 11 C -0.137 4.137 12 C 0.303 3.697 13 O -0.395 6.395 14 O -0.272 6.272 15 C -0.006 4.006 16 C -0.139 4.139 17 C -0.048 4.048 18 C -0.559 4.559 19 H 0.092 0.908 20 C -0.134 4.134 21 N -0.540 5.540 22 Si 0.706 3.294 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.190 1.190 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.151 0.849 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.037 0.963 43 H 0.032 0.968 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.505 9.330 15.303 27.234 hybrid contribution 1.056 0.465 0.468 1.245 sum -19.449 9.796 15.771 26.887 Atomic orbital electron populations 1.21844 0.94764 1.02231 1.02173 1.21538 0.96679 0.93563 1.03827 1.21132 0.88642 0.99262 1.00428 0.87454 1.20599 1.02093 0.91403 0.96345 1.19818 0.95253 0.95092 0.99022 1.21322 0.95700 0.95218 0.97941 1.21216 0.99498 0.93772 1.00053 1.21146 0.94770 0.99555 0.98648 1.21066 0.97381 0.95636 1.00586 1.21017 0.99439 0.93373 0.99843 1.23586 0.91887 0.74576 0.79676 1.90599 1.65104 1.42250 1.41504 1.86493 1.25876 1.72066 1.42806 1.23447 0.74507 1.01719 1.00943 1.21548 0.98529 1.00308 0.93504 1.19517 0.90160 0.97189 0.97916 1.21060 0.93005 1.37804 1.04075 0.90799 1.25012 0.98508 0.94714 0.95164 1.69907 1.15810 1.44119 1.24208 0.86789 0.81078 0.80111 0.81394 1.20195 1.21256 1.19000 0.92137 0.92287 0.92293 0.89966 0.91236 0.89396 0.89987 0.84911 0.86319 0.86457 0.86355 0.86299 0.91711 0.91669 0.91588 0.91598 0.96335 0.96757 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.78 37.16 0.36 -0.61 16 2 C -0.12 -1.01 5.36 -26.73 -0.14 -1.16 16 3 C -0.08 -0.76 2.26 -91.77 -0.21 -0.97 16 4 H 0.11 1.01 8.13 -51.93 -0.42 0.59 16 5 C -0.07 -0.62 4.46 -27.88 -0.12 -0.74 16 6 C -0.09 -1.01 4.72 -104.62 -0.49 -1.50 16 7 C -0.08 -1.03 8.00 -39.58 -0.32 -1.35 16 8 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 9 C -0.12 -1.28 10.05 -39.59 -0.40 -1.67 16 10 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 11 C -0.12 -1.17 9.73 -39.58 -0.39 -1.56 16 12 C 0.46 6.58 7.02 36.00 0.25 6.83 16 13 O -0.51 -8.13 12.19 -18.75 -0.23 -8.36 16 14 O -0.36 -5.74 10.00 -39.26 -0.39 -6.13 16 15 C 0.07 1.18 5.47 37.15 0.20 1.38 16 16 C -0.10 -2.04 5.53 -26.74 -0.15 -2.18 16 17 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 18 C -0.52 -14.93 9.66 -34.44 -0.33 -15.26 16 19 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 20 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 21 N -0.90 -27.87 13.96 55.43 0.77 -27.09 16 22 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.32 6.28 -51.93 -0.33 0.00 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.79 7.97 -51.93 -0.41 0.37 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.60 6.21 -51.93 -0.32 0.28 16 32 H 0.08 0.80 7.76 -51.93 -0.40 0.40 16 33 H 0.13 1.74 6.67 -52.49 -0.35 1.39 16 34 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.06 1.15 8.13 -51.93 -0.42 0.73 16 39 H 0.06 1.13 8.13 -51.93 -0.42 0.71 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 42 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 43 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 44 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 359.32 15.07 5.41 5.41 Total: -1.00 -32.00 359.32 -9.08 -41.08 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -7.24 Total: -1.25 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -2.74 Total: -20.80 kcal Atomic # 7 Polarization: -27.87 SS G_CDS: 0.77 Total: -27.09 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.62 Total: -14.49 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.00 -9.08 -41.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732855607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.056 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds