Wall clock time and date at job start Tue Mar 31 2020 05:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47080 * 2 1 4 4 H 1.08995 * 109.47114 * 304.99785 * 3 2 1 5 5 C 1.52999 * 109.46977 * 184.99826 * 3 2 1 6 6 C 1.50695 * 109.47313 * 64.99753 * 5 3 2 7 7 C 1.38253 * 120.00428 * 265.25438 * 6 5 3 8 8 C 1.38214 * 120.00132 * 180.27489 * 7 6 5 9 9 C 1.38260 * 120.00138 * 359.74399 * 8 7 6 10 10 C 1.38216 * 119.99407 * 359.97438 * 9 8 7 11 11 C 1.38218 * 119.99818 * 84.99738 * 6 5 3 12 12 C 1.50703 * 119.99968 * 0.02562 * 11 6 5 13 13 C 1.50707 * 109.47078 * 64.99962 * 3 2 1 14 14 O 1.20821 * 119.99714 * 120.00153 * 13 3 2 15 15 O 1.34221 * 120.00019 * 299.99988 * 13 3 2 16 16 C 1.45194 * 117.00104 * 180.02562 * 15 13 3 17 17 H 1.08997 * 109.47200 * 329.99835 * 16 15 13 18 18 C 1.53009 * 109.47085 * 89.99915 * 16 15 13 19 19 C 1.50699 * 109.47119 * 209.99624 * 16 15 13 20 20 H 1.07995 * 120.00214 * 0.02562 * 19 16 15 21 21 C 1.37884 * 119.99762 * 180.02562 * 19 16 15 22 22 N 1.31513 * 119.99955 * 180.02562 * 21 19 16 23 23 Si 1.86792 * 120.00081 * 359.97438 * 21 19 16 24 24 H 1.48504 * 109.47035 * 90.00428 * 23 21 19 25 25 H 1.48505 * 109.47311 * 209.99965 * 23 21 19 26 26 H 1.48497 * 109.47356 * 330.00151 * 23 21 19 27 27 H 1.08995 * 109.47164 * 59.99944 * 1 2 3 28 28 H 1.09000 * 109.47069 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47593 * 300.00253 * 1 2 3 30 30 H 1.08993 * 109.47254 * 240.00055 * 2 1 3 31 31 H 1.09005 * 109.46877 * 119.99575 * 2 1 3 32 32 H 1.09007 * 109.47248 * 304.99997 * 5 3 2 33 33 H 1.09000 * 109.47200 * 185.00057 * 5 3 2 34 34 H 1.08004 * 120.00242 * 0.04065 * 7 6 5 35 35 H 1.08003 * 119.99985 * 179.77036 * 8 7 6 36 36 H 1.07996 * 120.00396 * 180.02562 * 9 8 7 37 37 H 1.08009 * 119.99396 * 179.97438 * 10 9 8 38 38 H 1.09002 * 109.47152 * 269.72462 * 12 11 6 39 39 H 1.09001 * 109.46980 * 149.72562 * 12 11 6 40 40 H 1.09004 * 109.47113 * 29.72543 * 12 11 6 41 41 H 1.09006 * 109.47143 * 60.00197 * 18 16 15 42 42 H 1.08997 * 109.46751 * 180.02562 * 18 16 15 43 43 H 1.09000 * 109.46758 * 300.00288 * 18 16 15 44 44 H 0.97001 * 120.00190 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 6 3.9589 0.8821 -1.4671 7 6 4.2754 -0.4582 -1.5890 8 6 4.6424 -0.9726 -2.8182 9 6 4.6880 -0.1480 -3.9270 10 6 4.3659 1.1906 -3.8063 11 6 3.9989 1.7052 -2.5767 12 6 3.6489 3.1651 -2.4449 13 6 1.6412 2.1163 1.2878 14 8 2.4896 2.5531 2.0288 15 8 0.3437 2.2311 1.6113 16 6 0.0332 2.8920 2.8663 17 1 0.8448 2.7261 3.5748 18 6 -0.1337 4.3936 2.6244 19 6 -1.2467 2.3283 3.4277 20 1 -1.7738 1.5509 2.8949 21 6 -1.7447 2.8052 4.6218 22 7 -2.8613 2.3130 5.1120 23 14 -0.8325 4.1494 5.5438 24 1 -1.3223 5.4776 5.0950 25 1 -1.0725 4.0002 7.0017 26 1 0.6225 4.0393 5.2679 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 3.9953 0.8311 0.6660 33 1 3.9355 2.4655 -0.0366 34 1 4.2395 -1.1025 -0.7229 35 1 4.8933 -2.0189 -2.9127 36 1 4.9743 -0.5500 -4.8876 37 1 4.4019 1.8349 -4.6724 38 1 2.5807 3.2995 -2.6154 39 1 4.2095 3.7411 -3.1812 40 1 3.9032 3.5107 -1.4429 41 1 -0.9454 4.5594 1.9160 42 1 -0.3663 4.8897 3.5666 43 1 0.7920 4.8012 2.2183 44 1 -3.2115 2.6482 5.9522 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820063708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:04 Heat of formation + Delta-G solvation = -82.244101 kcal Electronic energy + Delta-G solvation = -23557.329385 eV Core-core repulsion = 20246.032964 eV Total energy + Delta-G solvation = -3311.296421 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.167 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.32486 -39.42804 -36.30382 -35.33073 -33.27664 -32.97819 -31.78398 -30.55577 -28.91991 -27.05710 -25.34626 -24.79430 -22.93677 -21.98978 -21.33536 -20.35227 -19.35190 -17.38908 -16.66836 -16.39547 -16.10046 -15.73000 -15.19910 -14.93446 -14.74696 -14.07662 -13.48759 -13.41161 -13.25998 -13.23891 -13.02896 -12.80506 -12.60486 -12.39279 -12.30746 -12.21459 -11.85474 -11.70689 -11.49057 -11.07826 -11.01800 -10.95598 -10.89439 -10.56639 -10.52460 -10.18217 -9.90961 -9.74602 -9.51071 -9.10043 -8.88003 -8.69050 -8.66750 -6.23241 -4.25393 1.22449 1.26698 2.84585 3.17847 3.30354 3.32334 3.42346 3.69424 4.26055 4.66786 4.69204 4.84228 4.85998 4.92152 4.98318 5.08169 5.17043 5.22568 5.32104 5.49047 5.52927 5.57748 5.64624 5.72250 5.76172 5.79859 5.92455 5.98875 6.06521 6.16119 6.20364 6.26449 6.27497 6.36850 6.38832 6.39623 6.43108 6.60272 6.60638 6.90443 6.92546 7.03530 7.37313 7.53661 8.23161 8.60998 8.84111 9.34195 10.88794 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.030094 B = 0.003728 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.202134 B = 7509.090825 C = 7910.938124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.112 4.112 3 C -0.076 4.076 4 H 0.103 0.897 5 C -0.070 4.070 6 C -0.075 4.075 7 C -0.109 4.109 8 C -0.126 4.126 9 C -0.123 4.123 10 C -0.121 4.121 11 C -0.080 4.080 12 C -0.123 4.123 13 C 0.457 3.543 14 O -0.524 6.524 15 O -0.333 6.333 16 C 0.187 3.813 17 H 0.045 0.955 18 C -0.169 4.169 19 C -0.523 4.523 20 H 0.087 0.913 21 C 0.079 3.921 22 N -0.888 5.888 23 Si 0.879 3.121 24 H -0.274 1.274 25 H -0.290 1.290 26 H -0.263 1.263 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.036 0.964 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.725 -3.217 -16.899 22.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.150 4.150 3 C -0.095 4.095 4 H 0.121 0.879 5 C -0.107 4.107 6 C -0.075 4.075 7 C -0.127 4.127 8 C -0.144 4.144 9 C -0.141 4.141 10 C -0.139 4.139 11 C -0.080 4.080 12 C -0.180 4.180 13 C 0.300 3.700 14 O -0.414 6.414 15 O -0.248 6.248 16 C 0.133 3.867 17 H 0.063 0.937 18 C -0.227 4.227 19 C -0.561 4.561 20 H 0.105 0.895 21 C -0.124 4.124 22 N -0.525 5.525 23 Si 0.708 3.292 24 H -0.200 1.200 25 H -0.217 1.217 26 H -0.188 1.188 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.784 -3.066 -16.483 21.705 hybrid contribution 0.389 0.798 0.612 1.078 sum 14.173 -2.268 -15.870 21.398 Atomic orbital electron populations 1.22047 0.94217 1.01781 1.04400 1.21528 0.97569 0.93359 1.02531 1.21066 0.95979 0.98074 0.94365 0.87905 1.20515 0.93536 1.02851 0.93781 1.19703 0.99406 0.93638 0.94771 1.21095 0.99185 0.94674 0.97769 1.21107 1.00679 0.99697 0.92930 1.21095 1.00581 0.93901 0.98537 1.21000 1.00487 0.95541 0.96834 1.19801 0.99155 0.96148 0.92918 1.20924 1.02055 0.91824 1.03148 1.23455 0.82324 0.76616 0.87588 1.90586 1.52071 1.46823 1.51916 1.86554 1.24904 1.70547 1.42842 1.20930 0.97908 0.88476 0.79362 0.93743 1.22519 1.00370 0.98306 1.01467 1.20784 1.05840 1.22929 1.06525 0.89451 1.24733 0.94697 0.96484 0.96466 1.69837 1.19873 1.42422 1.20408 0.86978 0.81204 0.82288 0.78729 1.20048 1.21732 1.18756 0.93032 0.93037 0.88931 0.90815 0.91644 0.90118 0.89613 0.85899 0.86249 0.86371 0.86269 0.90863 0.91654 0.90853 0.91810 0.92631 0.94516 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 9.55 37.15 0.35 -2.15 16 2 C -0.11 -1.52 5.17 -26.73 -0.14 -1.65 16 3 C -0.08 -1.09 2.31 -91.77 -0.21 -1.30 16 4 H 0.10 1.36 7.94 -51.93 -0.41 0.95 16 5 C -0.07 -0.89 3.67 -27.89 -0.10 -0.99 16 6 C -0.08 -0.85 4.58 -104.63 -0.48 -1.33 16 7 C -0.11 -1.14 8.20 -39.58 -0.32 -1.46 16 8 C -0.13 -1.18 10.05 -39.58 -0.40 -1.58 16 9 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 10 C -0.12 -1.15 9.70 -39.58 -0.38 -1.54 16 11 C -0.08 -0.85 5.88 -104.62 -0.62 -1.47 16 12 C -0.12 -1.17 9.41 36.01 0.34 -0.83 16 13 C 0.46 8.82 7.20 36.01 0.26 9.08 16 14 O -0.52 -11.34 15.14 -18.75 -0.28 -11.62 16 15 O -0.33 -7.31 7.01 -39.23 -0.27 -7.59 16 16 C 0.19 4.65 2.15 -27.88 -0.06 4.59 16 17 H 0.04 1.18 6.21 -51.93 -0.32 0.86 16 18 C -0.17 -3.84 9.03 37.16 0.34 -3.50 16 19 C -0.52 -14.76 9.48 -34.44 -0.33 -15.09 16 20 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 21 C 0.08 2.26 5.45 -17.82 -0.10 2.16 16 22 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 23 Si 0.88 21.64 24.37 -169.99 -4.14 17.49 16 24 H -0.27 -6.47 6.87 56.52 0.39 -6.08 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 1.72 5.46 -51.93 -0.28 1.44 16 30 H 0.07 0.86 6.20 -51.93 -0.32 0.54 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.05 8.05 -51.92 -0.42 0.64 16 33 H 0.09 1.13 5.97 -51.93 -0.31 0.82 16 34 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 35 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 40 H 0.07 0.74 6.02 -51.93 -0.31 0.43 16 41 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.06 1.28 3.27 -51.93 -0.17 1.11 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 347.52 15.07 5.24 5.24 Total: -1.00 -30.98 347.52 -7.74 -38.72 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.80 Total: 2.11 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -2.25 Total: -18.56 kcal Atomic # 7 Polarization: -26.56 SS G_CDS: 0.77 Total: -25.79 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.56 Total: -19.21 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.14 Total: 17.49 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.98 -7.74 -38.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820063708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.524 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds