Wall clock time and date at job start Tue Mar 31 2020 05:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47080 * 2 1 4 4 H 1.08995 * 109.47114 * 304.99785 * 3 2 1 5 5 C 1.52999 * 109.46977 * 184.99826 * 3 2 1 6 6 C 1.50695 * 109.47313 * 64.99753 * 5 3 2 7 7 C 1.38253 * 120.00428 * 265.25438 * 6 5 3 8 8 C 1.38214 * 120.00132 * 180.27489 * 7 6 5 9 9 C 1.38260 * 120.00138 * 359.74399 * 8 7 6 10 10 C 1.38216 * 119.99407 * 359.97438 * 9 8 7 11 11 C 1.38218 * 119.99818 * 84.99738 * 6 5 3 12 12 C 1.50703 * 119.99968 * 0.02562 * 11 6 5 13 13 C 1.50707 * 109.47078 * 64.99962 * 3 2 1 14 14 O 1.20821 * 119.99714 * 120.00153 * 13 3 2 15 15 O 1.34221 * 120.00019 * 299.99988 * 13 3 2 16 16 C 1.45194 * 117.00104 * 180.02562 * 15 13 3 17 17 H 1.08997 * 109.47200 * 329.99835 * 16 15 13 18 18 C 1.53009 * 109.47085 * 89.99915 * 16 15 13 19 19 C 1.50699 * 109.47119 * 209.99624 * 16 15 13 20 20 H 1.07995 * 120.00214 * 0.02562 * 19 16 15 21 21 C 1.37884 * 119.99762 * 180.02562 * 19 16 15 22 22 N 1.31513 * 119.99955 * 180.02562 * 21 19 16 23 23 Si 1.86792 * 120.00081 * 359.97438 * 21 19 16 24 24 H 1.48504 * 109.47035 * 90.00428 * 23 21 19 25 25 H 1.48505 * 109.47311 * 209.99965 * 23 21 19 26 26 H 1.48497 * 109.47356 * 330.00151 * 23 21 19 27 27 H 1.08995 * 109.47164 * 59.99944 * 1 2 3 28 28 H 1.09000 * 109.47069 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47593 * 300.00253 * 1 2 3 30 30 H 1.08993 * 109.47254 * 240.00055 * 2 1 3 31 31 H 1.09005 * 109.46877 * 119.99575 * 2 1 3 32 32 H 1.09007 * 109.47248 * 304.99997 * 5 3 2 33 33 H 1.09000 * 109.47200 * 185.00057 * 5 3 2 34 34 H 1.08004 * 120.00242 * 0.04065 * 7 6 5 35 35 H 1.08003 * 119.99985 * 179.77036 * 8 7 6 36 36 H 1.07996 * 120.00396 * 180.02562 * 9 8 7 37 37 H 1.08009 * 119.99396 * 179.97438 * 10 9 8 38 38 H 1.09002 * 109.47152 * 269.72462 * 12 11 6 39 39 H 1.09001 * 109.46980 * 149.72562 * 12 11 6 40 40 H 1.09004 * 109.47113 * 29.72543 * 12 11 6 41 41 H 1.09006 * 109.47143 * 60.00197 * 18 16 15 42 42 H 1.08997 * 109.46751 * 180.02562 * 18 16 15 43 43 H 1.09000 * 109.46758 * 300.00288 * 18 16 15 44 44 H 0.97001 * 120.00190 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 6 3.9589 0.8821 -1.4671 7 6 4.2754 -0.4582 -1.5890 8 6 4.6424 -0.9726 -2.8182 9 6 4.6880 -0.1480 -3.9270 10 6 4.3659 1.1906 -3.8063 11 6 3.9989 1.7052 -2.5767 12 6 3.6489 3.1651 -2.4449 13 6 1.6412 2.1163 1.2878 14 8 2.4896 2.5531 2.0288 15 8 0.3437 2.2311 1.6113 16 6 0.0332 2.8920 2.8663 17 1 0.8448 2.7261 3.5748 18 6 -0.1337 4.3936 2.6244 19 6 -1.2467 2.3283 3.4277 20 1 -1.7738 1.5509 2.8949 21 6 -1.7447 2.8052 4.6218 22 7 -2.8613 2.3130 5.1120 23 14 -0.8325 4.1494 5.5438 24 1 -1.3223 5.4776 5.0950 25 1 -1.0725 4.0002 7.0017 26 1 0.6225 4.0393 5.2679 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 3.9953 0.8311 0.6660 33 1 3.9355 2.4655 -0.0366 34 1 4.2395 -1.1025 -0.7229 35 1 4.8933 -2.0189 -2.9127 36 1 4.9743 -0.5500 -4.8876 37 1 4.4019 1.8349 -4.6724 38 1 2.5807 3.2995 -2.6154 39 1 4.2095 3.7411 -3.1812 40 1 3.9032 3.5107 -1.4429 41 1 -0.9454 4.5594 1.9160 42 1 -0.3663 4.8897 3.5666 43 1 0.7920 4.8012 2.2183 44 1 -3.2115 2.6482 5.9522 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820063708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:04 Heat of formation + Delta-G solvation = -97.743607 kcal Electronic energy + Delta-G solvation = -23558.001494 eV Core-core repulsion = 20246.032964 eV Total energy + Delta-G solvation = -3311.968531 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.167 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.72461 -40.43941 -37.90212 -36.62956 -35.25823 -33.85700 -32.81288 -32.41139 -29.94798 -27.82483 -27.35359 -25.99547 -24.32636 -22.78159 -22.75491 -21.57495 -20.72934 -19.13194 -18.46697 -17.93169 -17.05734 -16.96331 -16.54492 -16.41447 -15.70567 -15.15946 -15.05259 -14.85823 -14.44766 -14.35283 -14.20237 -14.19073 -13.95674 -13.78084 -13.53088 -13.50028 -13.14446 -12.95188 -12.86220 -12.55086 -12.27679 -12.14984 -11.91152 -11.88202 -11.75735 -11.69996 -11.63771 -11.56540 -11.15299 -11.11725 -10.81419 -9.62484 -9.43192 -8.44004 -6.51966 0.46668 0.54184 1.22240 1.28007 1.30318 1.39430 1.93555 2.19346 2.88708 2.90019 3.58730 3.71908 3.84757 4.01662 4.04041 4.13379 4.18816 4.25543 4.29974 4.41383 4.42120 4.49681 4.54256 4.58663 4.62634 4.75348 4.78424 4.84151 4.89135 4.96217 4.98873 5.03391 5.09232 5.20124 5.23273 5.24841 5.34717 5.39876 5.56387 5.65111 5.68572 5.74224 5.82204 6.15645 6.19442 6.52669 6.90493 7.13102 8.71797 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.030094 B = 0.003728 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.202134 B = 7509.090825 C = 7910.938124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.105 4.105 3 C -0.065 4.065 4 H 0.119 0.881 5 C -0.061 4.061 6 C -0.090 4.090 7 C -0.119 4.119 8 C -0.131 4.131 9 C -0.123 4.123 10 C -0.127 4.127 11 C -0.091 4.091 12 C -0.124 4.124 13 C 0.452 3.548 14 O -0.548 6.548 15 O -0.339 6.339 16 C 0.189 3.811 17 H 0.027 0.973 18 C -0.164 4.164 19 C -0.534 4.534 20 H 0.050 0.950 21 C 0.030 3.970 22 N -0.930 5.930 23 Si 0.938 3.062 24 H -0.252 1.252 25 H -0.284 1.284 26 H -0.260 1.260 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.128 0.872 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.383 -2.772 -18.834 24.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.142 4.142 3 C -0.083 4.083 4 H 0.137 0.863 5 C -0.098 4.098 6 C -0.090 4.090 7 C -0.137 4.137 8 C -0.148 4.148 9 C -0.141 4.141 10 C -0.145 4.145 11 C -0.091 4.091 12 C -0.180 4.180 13 C 0.297 3.703 14 O -0.439 6.439 15 O -0.255 6.255 16 C 0.134 3.866 17 H 0.045 0.955 18 C -0.221 4.221 19 C -0.572 4.572 20 H 0.068 0.932 21 C -0.169 4.169 22 N -0.568 5.568 23 Si 0.764 3.236 24 H -0.177 1.177 25 H -0.211 1.211 26 H -0.184 1.184 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.119 0.881 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.146 0.854 35 H 0.158 0.842 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.447 -2.624 -18.440 24.198 hybrid contribution -0.111 0.533 1.112 1.238 sum 15.336 -2.091 -17.328 23.234 Atomic orbital electron populations 1.21996 0.95310 1.02121 1.02862 1.21510 0.96397 0.92845 1.03487 1.21181 0.97371 0.98086 0.91711 0.86332 1.20397 0.91933 1.02583 0.94887 1.19586 1.01128 0.94294 0.93992 1.21250 0.99388 0.94420 0.98659 1.21395 1.00057 1.00874 0.92515 1.21451 0.99440 0.93713 0.99519 1.21280 0.99972 0.96220 0.96990 1.19979 0.99374 0.96511 0.93228 1.20941 1.02405 0.91629 1.03037 1.24483 0.80956 0.76005 0.88807 1.90566 1.52290 1.47950 1.53121 1.86599 1.26847 1.70657 1.41378 1.20619 0.95427 0.90071 0.80443 0.95494 1.22410 1.01723 0.96231 1.01718 1.20945 1.06993 1.22368 1.06851 0.93220 1.25536 0.95379 0.98809 0.97209 1.69955 1.21550 1.44116 1.21217 0.86012 0.79961 0.80141 0.77506 1.17689 1.21098 1.18414 0.91882 0.91849 0.92976 0.88148 0.92267 0.90883 0.90230 0.85386 0.84244 0.84015 0.84404 0.90701 0.90087 0.91912 0.91099 0.92788 0.92487 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.92 9.55 71.98 0.69 -4.23 16 2 C -0.11 -2.73 5.17 30.59 0.16 -2.57 16 3 C -0.06 -1.81 2.31 -11.54 -0.03 -1.83 16 4 H 0.12 2.97 7.94 -2.39 -0.02 2.95 16 5 C -0.06 -1.51 3.67 29.85 0.11 -1.40 16 6 C -0.09 -1.89 4.58 -19.87 -0.09 -1.98 16 7 C -0.12 -2.24 8.20 22.27 0.18 -2.05 16 8 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 9 C -0.12 -1.83 10.05 22.27 0.22 -1.61 16 10 C -0.13 -2.05 9.70 22.27 0.22 -1.84 16 11 C -0.09 -1.75 5.88 -19.87 -0.12 -1.86 16 12 C -0.12 -2.13 9.41 71.24 0.67 -1.46 16 13 C 0.45 17.54 7.20 71.24 0.51 18.05 16 14 O -0.55 -23.85 15.14 21.98 0.33 -23.52 16 15 O -0.34 -15.20 7.01 -51.33 -0.36 -15.56 16 16 C 0.19 9.51 2.15 29.85 0.06 9.58 16 17 H 0.03 1.46 6.21 -2.39 -0.01 1.44 16 18 C -0.16 -7.24 9.03 71.99 0.65 -6.59 16 19 C -0.53 -31.14 9.48 25.60 0.24 -30.90 16 20 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 21 C 0.03 1.76 5.45 84.66 0.46 2.22 16 22 N -0.93 -56.88 13.96 21.45 0.30 -56.58 16 23 Si 0.94 44.42 24.37 68.60 1.67 46.10 16 24 H -0.25 -11.00 6.87 99.48 0.68 -10.31 16 25 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 26 H -0.26 -12.09 6.53 99.48 0.65 -11.44 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.05 2.00 5.46 -2.38 -0.01 1.99 16 30 H 0.10 2.13 6.20 -2.39 -0.01 2.12 16 31 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.07 1.89 8.05 -2.38 -0.02 1.87 16 33 H 0.08 2.06 5.97 -2.39 -0.01 2.05 16 34 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 36 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.10 8.09 -2.39 -0.02 1.09 16 40 H 0.06 1.21 6.02 -2.38 -0.01 1.19 16 41 H 0.07 2.99 8.14 -2.38 -0.02 2.97 16 42 H 0.05 2.39 3.27 -2.39 -0.01 2.38 16 43 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -67.97 347.52 7.01 -60.96 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.90 Total: 18.91 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: 4.17 Total: -30.31 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: 0.30 Total: -56.58 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -0.03 Total: -39.08 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.67 Total: 46.10 kcal Total: -67.97 7.01 -60.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820063708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.785 kcal (2) G-P(sol) polarization free energy of solvation -67.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds