Wall clock time and date at job start Tue Mar 31 2020 06:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99997 * 2 1 4 4 H 1.48493 * 109.47241 * 270.00305 * 3 2 1 5 5 H 1.48503 * 109.47182 * 30.00318 * 3 2 1 6 6 H 1.48503 * 109.47047 * 149.99991 * 3 2 1 7 7 C 1.38806 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00052 * 189.04329 * 7 2 1 9 9 N 1.36937 * 120.00200 * 9.04868 * 7 2 1 10 10 C 1.47543 * 127.52484 * 16.45591 * 9 7 2 11 11 C 1.54384 * 105.08808 * 140.87416 * 10 9 7 12 12 H 1.08997 * 117.61938 * 243.47786 * 11 10 9 13 13 C 1.54284 * 104.96248 * 22.56683 * 11 10 9 14 14 H 1.09003 * 121.81308 * 223.98034 * 13 11 10 15 15 C 1.48146 * 127.83895 * 195.48344 * 9 7 2 16 16 C 1.53000 * 61.50298 * 115.10844 * 13 11 10 17 17 H 1.08995 * 117.44123 * 251.43687 * 16 13 11 18 18 N 1.46500 * 117.44006 * 106.73435 * 16 13 11 19 19 C 1.34782 * 119.99643 * 155.00111 * 18 16 13 20 20 O 1.21284 * 119.99690 * 359.97438 * 19 18 16 21 21 C 1.50697 * 119.99676 * 179.97438 * 19 18 16 22 22 H 1.09003 * 109.26325 * 59.50103 * 21 19 18 23 23 C 1.52870 * 109.26698 * 299.99840 * 21 19 18 24 24 C 1.53306 * 108.58749 * 184.84498 * 23 21 19 25 25 C 1.52872 * 108.58261 * 74.44378 * 24 23 21 26 26 C 1.52709 * 110.15356 * 305.47958 * 25 24 23 27 27 H 1.09005 * 115.39129 * 232.82358 * 26 25 24 28 28 C 1.53651 * 116.03210 * 90.19856 * 26 25 24 29 29 C 1.52067 * 120.52404 * 21.46910 * 26 25 24 30 30 H 1.09002 * 115.93316 * 209.99512 * 29 26 25 31 31 H 0.97002 * 119.99904 * 359.97438 * 1 2 3 32 32 H 1.09004 * 111.28068 * 21.36783 * 10 9 7 33 33 H 1.08996 * 109.07726 * 259.26170 * 10 9 7 34 34 H 1.08997 * 110.40851 * 100.79723 * 15 9 7 35 35 H 1.08999 * 110.40565 * 338.48079 * 15 9 7 36 36 H 0.97001 * 120.00140 * 334.99562 * 18 16 13 37 37 H 1.08994 * 109.61899 * 304.57427 * 23 21 19 38 38 H 1.08997 * 109.61695 * 65.11532 * 23 21 19 39 39 H 1.09005 * 109.61453 * 194.17251 * 24 23 21 40 40 H 1.08994 * 109.61815 * 314.71526 * 24 23 21 41 41 H 1.09003 * 109.35675 * 65.68659 * 25 24 23 42 42 H 1.09004 * 109.36020 * 185.40884 * 25 24 23 43 43 H 1.08996 * 117.53609 * 355.69178 * 28 26 25 44 44 H 1.09002 * 117.53824 * 140.86599 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0802 -1.2079 0.1476 9 7 1.3383 -2.3807 -0.1854 10 6 -0.0233 -2.5638 -0.7234 11 6 0.0622 -3.8219 -1.6140 12 1 -0.1266 -3.6998 -2.6805 13 6 1.2868 -4.5995 -1.0885 14 1 2.0181 -5.0441 -1.7635 15 6 1.8203 -3.7546 0.0885 16 6 -0.0971 -5.2369 -0.9498 17 1 -0.5250 -5.2958 0.0510 18 7 -0.4172 -6.3560 -1.8394 19 6 -1.3436 -7.2640 -1.4734 20 8 -1.9117 -7.1549 -0.4075 21 6 -1.6733 -8.4149 -2.3888 22 1 -0.7723 -9.0016 -2.5676 23 6 -2.1919 -7.8687 -3.7191 24 6 -2.6362 -9.0483 -4.5917 25 6 -3.9617 -9.5832 -4.0496 26 6 -3.8248 -9.9241 -2.5674 27 1 -4.1344 -10.9315 -2.2890 28 6 -4.1520 -8.7916 -1.5819 29 6 -2.7225 -9.2961 -1.7290 30 1 -2.3534 -9.8981 -0.8987 31 1 -0.4850 0.8401 0.0004 32 1 -0.3351 -1.7014 -1.3127 33 1 -0.7137 -2.7296 0.1036 34 1 1.4144 -4.1186 1.0323 35 1 2.9098 -3.7779 0.1100 36 1 0.0374 -6.4434 -2.6918 37 1 -3.0396 -7.2080 -3.5378 38 1 -1.3974 -7.3190 -4.2237 39 1 -2.7700 -8.7127 -5.6201 40 1 -1.8822 -9.8345 -4.5557 41 1 -4.7357 -8.8261 -4.1762 42 1 -4.2413 -10.4813 -4.6005 43 1 -4.3863 -7.8124 -1.9994 44 1 -4.6895 -9.0557 -0.6711 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025831707.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:58 Heat of formation + Delta-G solvation = 36.951526 kcal Electronic energy + Delta-G solvation = -23061.641471 eV Core-core repulsion = 19787.806511 eV Total energy + Delta-G solvation = -3273.834960 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.61816 -38.95422 -37.81211 -34.50471 -33.45376 -32.51644 -31.34205 -29.98117 -27.15189 -25.90072 -25.23761 -23.02194 -22.31337 -21.40823 -20.44250 -20.07643 -19.23909 -18.59353 -17.06635 -16.81347 -16.55226 -16.03643 -15.04110 -14.73928 -14.42558 -14.04316 -13.81957 -13.64342 -13.57104 -13.21865 -12.96304 -12.71080 -12.38538 -12.21768 -11.61980 -11.51642 -11.43945 -11.35734 -11.12257 -10.98254 -10.83193 -10.61847 -10.39058 -10.26188 -10.16102 -10.15022 -9.91440 -9.76045 -9.50688 -9.17240 -8.72990 -8.21100 -6.85302 -5.79479 -3.14259 2.68935 3.07103 3.38352 3.43395 3.45692 3.70293 4.23759 4.31747 4.44163 4.46809 4.51373 4.72972 4.85907 4.91668 4.97170 5.11578 5.16915 5.21579 5.35232 5.37722 5.37940 5.40578 5.58252 5.63366 5.72815 5.76109 5.84007 5.86378 5.89810 5.90691 5.98620 6.09545 6.10706 6.19669 6.27899 6.53311 6.68960 6.83656 6.89992 7.39776 7.54842 7.63526 7.72420 8.21317 8.35648 9.12150 9.74120 10.50982 11.34838 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.037098 B = 0.002886 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.584162 B = 9700.009160 C = 9753.731089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.229 4.229 8 H 0.076 0.924 9 N -0.593 5.593 10 C 0.187 3.813 11 C -0.182 4.182 12 H 0.101 0.899 13 C -0.180 4.180 14 H 0.100 0.900 15 C 0.156 3.844 16 C 0.095 3.905 17 H 0.133 0.867 18 N -0.698 5.698 19 C 0.517 3.483 20 O -0.530 6.530 21 C -0.073 4.073 22 H 0.099 0.901 23 C -0.115 4.115 24 C -0.117 4.117 25 C -0.090 4.090 26 C -0.152 4.152 27 H 0.101 0.899 28 C -0.161 4.161 29 C -0.120 4.120 30 H 0.101 0.899 31 H 0.255 0.745 32 H 0.089 0.911 33 H 0.024 0.976 34 H 0.027 0.973 35 H 0.051 0.949 36 H 0.397 0.603 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.140 -20.217 -10.024 23.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.357 4.357 8 H 0.094 0.906 9 N -0.317 5.317 10 C 0.061 3.939 11 C -0.203 4.203 12 H 0.119 0.881 13 C -0.202 4.202 14 H 0.118 0.882 15 C 0.029 3.971 16 C -0.011 4.011 17 H 0.150 0.850 18 N -0.347 5.347 19 C 0.303 3.697 20 O -0.406 6.406 21 C -0.094 4.094 22 H 0.117 0.883 23 C -0.153 4.153 24 C -0.154 4.154 25 C -0.128 4.128 26 C -0.170 4.170 27 H 0.120 0.880 28 C -0.198 4.198 29 C -0.138 4.138 30 H 0.119 0.881 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.042 0.958 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.231 0.769 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.112 0.888 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.583 -19.854 -9.179 22.574 hybrid contribution 0.791 0.788 -0.480 1.215 sum -4.791 -19.066 -9.658 21.903 Atomic orbital electron populations 1.69916 1.05053 1.25451 1.55543 1.24915 0.95646 0.98005 1.01652 0.86101 0.78701 0.83232 0.77603 1.21521 1.21625 1.20524 1.18993 0.90813 0.82334 1.43597 0.90594 1.45016 1.14100 0.99987 1.72557 1.20924 0.87040 0.92090 0.93813 1.25403 1.02418 0.92378 1.00146 0.88068 1.24307 0.90693 1.02081 1.03075 0.88186 1.21121 0.97145 0.85792 0.93017 1.22480 0.99109 0.84384 0.95170 0.84980 1.45400 1.41241 1.26091 1.21961 1.20557 0.78892 0.82962 0.87239 1.90707 1.50802 1.75331 1.23750 1.20633 0.99445 0.94535 0.94790 0.88295 1.21630 1.01726 0.98227 0.93705 1.21566 0.97536 0.97635 0.98670 1.21061 0.97554 1.00961 0.93185 1.22310 1.03714 0.97770 0.93232 0.88039 1.22989 0.98007 0.98051 1.00740 1.21361 0.90228 1.01492 1.00747 0.88056 0.93520 0.89247 0.95808 0.95481 0.93052 0.76936 0.90996 0.91065 0.91422 0.91419 0.91551 0.91581 0.88847 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.98 10.88 55.49 0.60 -26.38 16 2 C 0.00 -0.14 5.40 -17.43 -0.09 -0.23 16 3 Si 0.91 21.98 29.56 -169.99 -5.03 16.96 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.42 10.34 -15.06 -0.16 -6.58 16 8 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 9 N -0.59 -15.36 3.37 -169.35 -0.57 -15.93 16 10 C 0.19 4.59 5.67 -2.75 -0.02 4.58 16 11 C -0.18 -3.49 7.22 -86.98 -0.63 -4.11 16 12 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 13 C -0.18 -3.20 6.91 -89.22 -0.62 -3.81 16 14 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 15 C 0.16 3.31 7.04 -2.41 -0.02 3.30 16 16 C 0.09 1.61 6.22 -65.69 -0.41 1.20 16 17 H 0.13 2.57 7.40 -51.93 -0.38 2.19 16 18 N -0.70 -9.30 5.47 -51.64 -0.28 -9.59 16 19 C 0.52 7.18 7.10 -10.98 -0.08 7.10 16 20 O -0.53 -9.59 15.22 5.55 0.08 -9.51 16 21 C -0.07 -0.72 2.58 -92.31 -0.24 -0.96 16 22 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 23 C -0.12 -0.96 4.82 -26.64 -0.13 -1.09 16 24 C -0.12 -0.79 5.93 -26.64 -0.16 -0.95 16 25 C -0.09 -0.65 5.83 -26.95 -0.16 -0.81 16 26 C -0.15 -1.29 6.19 -90.91 -0.56 -1.85 16 27 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 28 C -0.16 -1.72 9.16 -26.75 -0.25 -1.96 16 29 C -0.12 -1.23 4.69 -91.92 -0.43 -1.67 16 30 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.09 2.43 6.57 -51.93 -0.34 2.08 16 33 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.40 4.12 8.33 -40.82 -0.34 3.78 16 37 H 0.07 0.70 7.11 -51.93 -0.37 0.34 16 38 H 0.07 0.52 7.70 -51.93 -0.40 0.12 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.43 8.04 -51.93 -0.42 0.01 16 41 H 0.07 0.50 8.06 -51.93 -0.42 0.08 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 1.08 7.26 -51.93 -0.38 0.70 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 347.11 15.07 5.23 5.23 Total: -1.00 -31.97 347.11 -11.14 -43.11 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -7.24 Total: 3.95 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -3.93 Total: -7.84 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -0.25 Total: -51.90 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.08 Total: -9.51 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.97 -11.14 -43.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025831707.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.059 kcal (2) G-P(sol) polarization free energy of solvation -31.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds