Wall clock time and date at job start Tue Mar 31 2020 06:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38264 * 120.00080 * 2 1 4 4 C 1.38206 * 120.00047 * 179.97438 * 3 2 1 5 5 C 1.38255 * 120.00445 * 359.81566 * 4 3 2 6 6 C 1.38214 * 119.99584 * 0.42262 * 5 4 3 7 7 C 1.50697 * 120.00090 * 179.81086 * 6 5 4 8 8 C 1.50710 * 109.47000 * 269.72297 * 7 6 5 9 9 O 1.21275 * 119.99508 * 359.97438 * 8 7 6 10 10 N 1.34769 * 120.00119 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00173 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.47299 * 34.99418 * 11 10 8 13 13 C 1.53006 * 109.46741 * 274.99573 * 11 10 8 14 14 C 1.53004 * 109.47454 * 155.00146 * 11 10 8 15 15 N 1.46496 * 109.46575 * 304.99735 * 14 11 10 16 16 C 1.46498 * 120.00083 * 269.99629 * 15 14 11 17 17 C 1.36941 * 120.00132 * 90.00278 * 15 14 11 18 18 H 1.07994 * 119.99879 * 22.02373 * 17 15 14 19 19 C 1.38811 * 119.99958 * 202.02447 * 17 15 14 20 20 N 1.31614 * 120.00253 * 11.43241 * 19 17 15 21 21 Si 1.86806 * 119.99923 * 191.43205 * 19 17 15 22 22 H 1.48506 * 109.46782 * 60.00019 * 21 19 17 23 23 H 1.48500 * 109.47061 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47188 * 300.00457 * 21 19 17 25 25 C 1.38212 * 120.00380 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47065 * 270.01583 * 1 2 3 27 27 H 1.08993 * 109.47170 * 30.02006 * 1 2 3 28 28 H 1.09006 * 109.46993 * 150.02481 * 1 2 3 29 29 H 1.07999 * 119.99478 * 0.02562 * 3 2 1 30 30 H 1.08005 * 119.99684 * 180.02562 * 4 3 2 31 31 H 1.07999 * 120.00096 * 180.22908 * 5 4 3 32 32 H 1.09002 * 109.47127 * 29.72075 * 7 6 5 33 33 H 1.09003 * 109.47575 * 149.72214 * 7 6 5 34 34 H 0.97003 * 120.00197 * 359.97438 * 10 8 7 35 35 H 1.08999 * 109.46895 * 179.97438 * 13 11 10 36 36 H 1.09000 * 109.47540 * 300.00071 * 13 11 10 37 37 H 1.09005 * 109.46857 * 60.00496 * 13 11 10 38 38 H 1.09000 * 109.46978 * 64.99267 * 14 11 10 39 39 H 1.09001 * 109.47112 * 184.99937 * 14 11 10 40 40 H 1.09005 * 109.47142 * 94.04812 * 16 15 14 41 41 H 1.09001 * 109.47413 * 214.04394 * 16 15 14 42 42 H 1.08999 * 109.47701 * 334.04899 * 16 15 14 43 43 H 0.96999 * 120.00204 * 179.97438 * 20 19 17 44 44 H 1.07999 * 119.99824 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0049 6 6 3.5807 -1.1969 -0.0001 7 6 4.3342 -2.5019 0.0004 8 6 4.5849 -2.9377 -1.4203 9 8 4.1902 -2.2558 -2.3423 10 7 5.2478 -4.0850 -1.6662 11 6 5.4921 -4.5084 -3.0473 12 1 5.6659 -3.6314 -3.6708 13 6 4.2735 -5.2722 -3.5696 14 6 6.7217 -5.4179 -3.0921 15 7 7.8613 -4.7285 -2.4823 16 6 8.7457 -3.9030 -3.3085 17 6 8.1001 -4.8558 -1.1399 18 1 7.7052 -5.7031 -0.5991 19 6 8.8498 -3.8957 -0.4742 20 7 9.1401 -2.7583 -1.0692 21 14 9.4466 -4.2182 1.2664 22 1 10.3155 -5.4225 1.2765 23 1 10.2202 -3.0462 1.7495 24 1 8.2793 -4.4426 2.1564 25 6 2.1981 -1.1969 0.0005 26 1 -0.3633 0.0003 1.0277 27 1 -0.3633 0.8897 -0.5141 28 1 -0.3633 -0.8903 -0.5135 29 1 1.6582 2.1327 0.0004 30 1 4.1203 2.1328 0.0010 31 1 5.3517 0.0002 0.0091 32 1 5.2868 -2.3713 0.5139 33 1 3.7453 -3.2614 0.5148 34 1 5.5639 -4.6302 -0.9288 35 1 4.4551 -5.5867 -4.5973 36 1 4.0997 -6.1492 -2.9461 37 1 3.3976 -4.6242 -3.5378 38 1 6.5150 -6.3356 -2.5414 39 1 6.9562 -5.6610 -4.1285 40 1 8.4131 -2.8656 -3.2723 41 1 9.7654 -3.9710 -2.9293 42 1 8.7167 -4.2580 -4.3386 43 1 9.6636 -2.0872 -0.6039 44 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754324665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:32 Heat of formation + Delta-G solvation = -3.136262 kcal Electronic energy + Delta-G solvation = -23572.841310 eV Core-core repulsion = 20297.268013 eV Total energy + Delta-G solvation = -3275.573297 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.63817 -38.54420 -36.26455 -33.94899 -33.21738 -31.88407 -31.25138 -30.04736 -27.42162 -26.61053 -26.15107 -25.60433 -22.31872 -21.76300 -21.00522 -19.88767 -19.45964 -16.89954 -16.34730 -16.19432 -15.51593 -15.41688 -14.85294 -14.59344 -14.13765 -13.76156 -13.70014 -13.26995 -13.13226 -12.98364 -12.84294 -12.63596 -12.33580 -12.17732 -11.94626 -11.67567 -11.50440 -11.35940 -11.23756 -10.85708 -10.84582 -10.76071 -10.71307 -10.38599 -10.22763 -10.08459 -9.83770 -9.17901 -8.59044 -8.54276 -8.33392 -8.18385 -6.79399 -5.75505 -3.21655 1.57599 1.62846 3.30927 3.39077 3.39937 3.40704 3.82501 4.21763 4.44024 4.88724 4.95531 5.09624 5.32071 5.33937 5.38399 5.47714 5.51738 5.56149 5.62188 5.71118 5.75761 5.83651 5.85512 5.91942 5.94769 6.02171 6.18754 6.27664 6.29062 6.32994 6.47391 6.55773 6.69567 6.74379 6.75885 6.89013 6.92281 7.24720 7.36574 7.39018 7.68471 7.79019 8.34367 8.39305 9.05004 9.18872 9.82998 10.33289 11.28530 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.015256 B = 0.004974 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.853793 B = 5627.517594 C = 6686.505959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.093 4.093 3 C -0.128 4.128 4 C -0.116 4.116 5 C -0.107 4.107 6 C -0.048 4.048 7 C -0.107 4.107 8 C 0.520 3.480 9 O -0.555 6.555 10 N -0.689 5.689 11 C 0.119 3.881 12 H 0.075 0.925 13 C -0.159 4.159 14 C 0.142 3.858 15 N -0.598 5.598 16 C 0.164 3.836 17 C -0.257 4.257 18 H 0.066 0.934 19 C 0.007 3.993 20 N -0.900 5.900 21 Si 0.897 3.103 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.283 1.283 25 C -0.108 4.108 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.403 0.597 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.051 0.949 40 H 0.027 0.973 41 H 0.045 0.955 42 H -0.005 1.005 43 H 0.253 0.747 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.881 1.339 2.159 13.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.134 4.134 5 C -0.125 4.125 6 C -0.048 4.048 7 C -0.147 4.147 8 C 0.306 3.694 9 O -0.434 6.434 10 N -0.339 5.339 11 C 0.011 3.989 12 H 0.093 0.907 13 C -0.218 4.218 14 C 0.014 3.986 15 N -0.321 5.321 16 C 0.020 3.980 17 C -0.387 4.387 18 H 0.084 0.916 19 C -0.192 4.192 20 N -0.544 5.544 21 Si 0.727 3.273 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.209 1.209 25 C -0.126 4.126 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.134 0.866 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.238 0.762 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.063 0.937 42 H 0.014 0.986 43 H 0.063 0.937 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.004 1.955 1.546 13.240 hybrid contribution 0.692 -0.229 1.322 1.509 sum -12.312 1.726 2.868 12.759 Atomic orbital electron populations 1.20743 0.91575 1.02521 1.01858 1.19794 0.95705 0.93195 1.00571 1.20923 0.94254 0.97151 1.02302 1.21054 0.94204 0.97838 1.00334 1.21080 1.00168 0.91956 0.99298 1.19339 0.93320 0.94020 0.98155 1.20700 1.02255 0.95468 0.96242 1.20177 0.77947 0.80889 0.90380 1.90640 1.52505 1.54047 1.46211 1.45705 1.55741 1.23419 1.09031 1.21777 0.95186 0.98864 0.83071 0.90716 1.22154 0.99046 1.00083 1.00506 1.21180 0.86525 0.93921 0.96979 1.43879 1.26166 1.56458 1.05549 1.20791 0.94491 0.94014 0.88725 1.19044 1.31292 1.03808 0.84517 0.91631 1.24986 1.01536 0.95110 0.97557 1.70067 1.41571 1.05873 1.36893 0.86471 0.78872 0.77139 0.84819 1.21135 1.21683 1.20916 1.20802 0.93417 0.97343 1.01053 0.91544 0.91831 0.91742 0.86617 0.86312 0.85955 0.87648 0.88772 0.76157 0.92404 0.93092 0.93036 0.93408 0.93099 0.95472 0.93650 0.98637 0.93708 0.86582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 36.00 0.36 -0.75 16 2 C -0.09 -1.25 5.88 -104.62 -0.62 -1.87 16 3 C -0.13 -1.72 9.70 -39.58 -0.38 -2.10 16 4 C -0.12 -1.69 10.05 -39.59 -0.40 -2.08 16 5 C -0.11 -1.78 9.70 -39.58 -0.38 -2.16 16 6 C -0.05 -0.79 4.37 -104.62 -0.46 -1.25 16 7 C -0.11 -1.76 5.83 -29.03 -0.17 -1.92 16 8 C 0.52 10.31 7.79 -10.98 -0.09 10.22 16 9 O -0.56 -12.81 15.70 5.56 0.09 -12.73 16 10 N -0.69 -13.19 4.49 -53.80 -0.24 -13.43 16 11 C 0.12 2.25 2.88 -67.93 -0.20 2.05 16 12 H 0.07 1.65 7.58 -51.93 -0.39 1.26 16 13 C -0.16 -2.45 9.48 37.16 0.35 -2.09 16 14 C 0.14 2.74 5.36 -4.04 -0.02 2.72 16 15 N -0.60 -14.15 2.82 -181.12 -0.51 -14.66 16 16 C 0.16 4.02 9.01 59.85 0.54 4.56 16 17 C -0.26 -6.43 8.02 -15.06 -0.12 -6.55 16 18 H 0.07 1.57 7.84 -52.49 -0.41 1.16 16 19 C 0.01 0.19 5.13 -17.43 -0.09 0.10 16 20 N -0.90 -25.11 10.57 55.49 0.59 -24.53 16 21 Si 0.90 20.58 29.57 -169.99 -5.03 15.56 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 C -0.11 -1.61 9.36 -39.58 -0.37 -1.98 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 28 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 31 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 32 H 0.11 1.78 8.08 -51.93 -0.42 1.36 16 33 H 0.09 1.26 8.09 -51.93 -0.42 0.84 16 34 H 0.40 7.50 7.40 -40.82 -0.30 7.19 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 39 H 0.05 0.90 7.86 -51.93 -0.41 0.50 16 40 H 0.03 0.73 7.44 -51.93 -0.39 0.35 16 41 H 0.04 1.18 7.16 -51.93 -0.37 0.81 16 42 H 0.00 -0.11 7.85 -51.93 -0.41 -0.51 16 43 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 363.64 15.07 5.48 5.48 Total: -1.00 -30.75 363.64 -8.96 -39.71 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -7.29 Total: 7.72 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -2.04 Total: -3.12 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.17 Total: -52.62 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.75 -8.96 -39.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754324665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.577 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds