Wall clock time and date at job start Tue Mar 31 2020 06:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38253 * 120.00394 * 2 1 4 4 C 1.38215 * 120.00128 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99756 * 359.76947 * 4 3 2 6 6 C 1.38210 * 120.00130 * 0.46038 * 5 4 3 7 7 C 1.50705 * 120.00125 * 179.78636 * 6 5 4 8 8 C 1.50702 * 109.47157 * 269.72871 * 7 6 5 9 9 O 1.21282 * 120.00013 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99763 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00098 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47247 * 325.00541 * 11 10 8 13 13 C 1.53003 * 109.47009 * 85.00103 * 11 10 8 14 14 C 1.52994 * 109.47695 * 205.00259 * 11 10 8 15 15 N 1.46506 * 109.46755 * 54.99593 * 14 11 10 16 16 C 1.46494 * 120.00268 * 269.72379 * 15 14 11 17 17 C 1.36938 * 119.99577 * 90.00503 * 15 14 11 18 18 H 1.08000 * 120.00326 * 339.64670 * 17 15 14 19 19 C 1.38810 * 119.99499 * 159.64517 * 17 15 14 20 20 N 1.31616 * 120.00647 * 344.30887 * 19 17 15 21 21 Si 1.86804 * 119.99799 * 164.31281 * 19 17 15 22 22 H 1.48506 * 109.46900 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47443 * 119.99855 * 21 19 17 24 24 H 1.48502 * 109.47186 * 240.00248 * 21 19 17 25 25 C 1.38222 * 119.99709 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.47510 * 270.02560 * 1 2 3 27 27 H 1.09005 * 109.46576 * 30.02713 * 1 2 3 28 28 H 1.08996 * 109.47261 * 150.01621 * 1 2 3 29 29 H 1.08007 * 119.99946 * 359.97438 * 3 2 1 30 30 H 1.08000 * 119.99994 * 179.97438 * 4 3 2 31 31 H 1.07999 * 119.99963 * 180.25211 * 5 4 3 32 32 H 1.09003 * 109.46807 * 149.72817 * 7 6 5 33 33 H 1.09001 * 109.46680 * 29.73338 * 7 6 5 34 34 H 0.97005 * 120.00131 * 0.02562 * 10 8 7 35 35 H 1.09004 * 109.46779 * 180.02562 * 13 11 10 36 36 H 1.09004 * 109.47058 * 299.99993 * 13 11 10 37 37 H 1.08997 * 109.47127 * 60.00428 * 13 11 10 38 38 H 1.08999 * 109.46958 * 295.00289 * 14 11 10 39 39 H 1.08997 * 109.47651 * 174.99733 * 14 11 10 40 40 H 1.09001 * 109.47741 * 265.09219 * 16 15 14 41 41 H 1.09002 * 109.47236 * 25.09056 * 16 15 14 42 42 H 1.09001 * 109.47266 * 145.08417 * 16 15 14 43 43 H 0.97001 * 120.00343 * 179.97438 * 20 19 17 44 44 H 1.07993 * 119.99733 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2716 -0.0002 0.0059 6 6 3.5806 -1.1971 0.0011 7 6 4.3340 -2.5023 0.0021 8 6 4.5852 -2.9384 -1.4185 9 8 4.1916 -2.2563 -2.3408 10 7 5.2481 -4.0859 -1.6638 11 6 5.4927 -4.5096 -3.0446 12 1 4.6461 -4.2224 -3.6683 13 6 6.7630 -3.8356 -3.5674 14 6 5.6665 -6.0290 -3.0888 15 7 4.5000 -6.6718 -2.4785 16 6 4.4929 -6.9659 -1.0434 17 6 3.4185 -7.0028 -3.2506 18 1 3.2678 -6.5193 -4.2045 19 6 2.5162 -7.9599 -2.8072 20 7 2.8429 -8.7643 -1.8181 21 14 0.8379 -8.1061 -3.6145 22 1 0.7178 -7.0931 -4.6937 23 1 0.6829 -9.4656 -4.1915 24 1 -0.2213 -7.8754 -2.5996 25 6 2.1980 -1.1971 0.0005 26 1 -0.3634 0.0005 1.0276 27 1 -0.3633 0.8898 -0.5143 28 1 -0.3633 -0.8901 -0.5136 29 1 1.6584 2.1327 -0.0004 30 1 4.1205 2.1325 0.0001 31 1 5.3516 -0.0003 0.0104 32 1 3.7448 -3.2615 0.5165 33 1 5.2864 -2.3716 0.5159 34 1 5.5632 -4.6313 -0.9261 35 1 6.9448 -4.1506 -4.5950 36 1 6.6392 -2.7531 -3.5360 37 1 7.6096 -4.1228 -2.9439 38 1 6.5647 -6.3081 -2.5381 39 1 5.7598 -6.3541 -4.1250 40 1 4.8198 -7.9931 -0.8813 41 1 5.1701 -6.2838 -0.5293 42 1 3.4836 -6.8397 -0.6516 43 1 2.2122 -9.4329 -1.5081 44 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754324666.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:36 Heat of formation + Delta-G solvation = -0.068275 kcal Electronic energy + Delta-G solvation = -23264.011990 eV Core-core repulsion = 19988.571731 eV Total energy + Delta-G solvation = -3275.440259 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.86181 -38.76082 -36.40184 -34.07057 -33.40012 -32.03492 -31.23792 -30.27036 -27.61707 -26.74938 -26.21126 -25.61155 -22.47852 -21.89294 -21.02913 -20.14264 -19.70189 -16.84473 -16.70609 -16.42212 -15.68336 -15.42942 -15.00733 -14.68154 -14.36632 -13.82016 -13.68696 -13.46475 -13.31968 -13.10850 -12.93246 -12.79492 -12.40785 -12.17912 -12.03619 -11.83482 -11.67828 -11.44074 -11.31532 -11.00727 -10.92035 -10.84558 -10.63395 -10.61812 -10.18947 -9.98849 -9.86389 -9.42461 -8.69228 -8.63291 -8.51028 -8.41612 -6.78287 -5.74209 -3.17370 1.40767 1.48249 3.11582 3.38027 3.46139 3.49355 3.59070 3.98922 4.50521 4.71919 4.82467 4.92252 5.15960 5.22487 5.31323 5.33859 5.36676 5.46308 5.53811 5.57310 5.60181 5.65314 5.72016 5.81116 5.83747 5.95743 6.09011 6.13297 6.18402 6.19636 6.45854 6.50579 6.53957 6.59325 6.62719 6.69872 6.80992 7.08847 7.11927 7.29898 7.64953 7.80845 8.04513 8.36020 8.74570 9.21712 9.85020 10.31770 11.30834 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.014405 B = 0.004526 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.339336 B = 6185.053551 C = 7424.258286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.126 4.126 4 C -0.118 4.118 5 C -0.113 4.113 6 C -0.052 4.052 7 C -0.107 4.107 8 C 0.514 3.486 9 O -0.543 6.543 10 N -0.705 5.705 11 C 0.117 3.883 12 H 0.083 0.917 13 C -0.158 4.158 14 C 0.143 3.857 15 N -0.599 5.599 16 C 0.168 3.832 17 C -0.251 4.251 18 H 0.069 0.931 19 C 0.002 3.998 20 N -0.908 5.908 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.290 1.290 25 C -0.104 4.104 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.396 0.604 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.040 0.960 39 H 0.062 0.938 40 H 0.030 0.970 41 H -0.007 1.007 42 H 0.042 0.958 43 H 0.251 0.749 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.878 15.612 6.574 17.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.144 4.144 4 C -0.136 4.136 5 C -0.131 4.131 6 C -0.053 4.053 7 C -0.147 4.147 8 C 0.300 3.700 9 O -0.420 6.420 10 N -0.357 5.357 11 C 0.010 3.990 12 H 0.101 0.899 13 C -0.217 4.217 14 C 0.015 3.985 15 N -0.321 5.321 16 C 0.023 3.977 17 C -0.380 4.380 18 H 0.086 0.914 19 C -0.196 4.196 20 N -0.554 5.554 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.217 1.217 25 C -0.122 4.122 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.232 0.768 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.011 0.989 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.490 15.927 5.982 17.367 hybrid contribution -0.790 -0.486 -0.046 0.928 sum 2.700 15.441 5.936 16.761 Atomic orbital electron populations 1.20786 0.91352 1.02853 1.02081 1.19859 0.95972 0.93097 0.99727 1.20957 0.94267 0.97267 1.01951 1.21018 0.94275 0.97694 1.00634 1.20920 0.99501 0.92020 1.00692 1.19286 0.93508 0.93701 0.98779 1.20718 1.01887 0.96168 0.95879 1.20319 0.77798 0.81279 0.90631 1.90682 1.51002 1.54220 1.46122 1.46033 1.57348 1.22941 1.09353 1.21877 0.97189 0.97600 0.82363 0.89909 1.22121 0.97935 1.00736 1.00882 1.21046 0.90113 0.88999 0.98373 1.43853 1.14522 1.69309 1.04413 1.20808 0.98078 0.96239 0.82567 1.19225 1.00223 1.16222 1.02361 0.91352 1.24905 0.99597 0.96188 0.98920 1.70085 1.34428 1.20667 1.30212 0.86243 0.84602 0.77371 0.78737 1.20305 1.21774 1.21659 1.20926 0.93534 0.97762 0.99943 0.91339 0.91725 0.91386 0.86480 0.86344 0.86479 0.87958 0.88413 0.76837 0.92037 0.92968 0.93099 0.94155 0.92010 0.95212 0.98904 0.93927 0.93873 0.86103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.01 36.01 0.36 -0.82 16 2 C -0.09 -1.11 5.88 -104.62 -0.62 -1.73 16 3 C -0.13 -1.50 9.70 -39.58 -0.38 -1.89 16 4 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 5 C -0.11 -1.46 9.70 -39.59 -0.38 -1.85 16 6 C -0.05 -0.74 4.37 -104.62 -0.46 -1.20 16 7 C -0.11 -1.41 5.83 -29.03 -0.17 -1.58 16 8 C 0.51 8.81 7.79 -10.99 -0.09 8.73 16 9 O -0.54 -11.41 15.70 5.56 0.09 -11.32 16 10 N -0.71 -11.68 4.53 -53.81 -0.24 -11.92 16 11 C 0.12 2.09 2.88 -67.93 -0.20 1.89 16 12 H 0.08 1.77 7.58 -51.93 -0.39 1.38 16 13 C -0.16 -2.31 9.48 37.16 0.35 -1.96 16 14 C 0.14 2.77 5.29 -4.04 -0.02 2.75 16 15 N -0.60 -14.37 2.78 -181.12 -0.50 -14.87 16 16 C 0.17 3.86 8.52 59.84 0.51 4.37 16 17 C -0.25 -6.84 9.67 -15.06 -0.15 -6.98 16 18 H 0.07 1.87 7.88 -52.49 -0.41 1.46 16 19 C 0.00 0.05 5.05 -17.43 -0.09 -0.04 16 20 N -0.91 -26.12 10.69 55.49 0.59 -25.52 16 21 Si 0.90 22.12 29.58 -169.99 -5.03 17.10 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 C -0.10 -1.49 9.36 -39.58 -0.37 -1.86 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 28 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 29 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 30 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 32 H 0.10 1.26 8.09 -51.93 -0.42 0.84 16 33 H 0.10 1.00 8.08 -51.93 -0.42 0.58 16 34 H 0.40 5.91 6.22 -40.82 -0.25 5.66 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 39 H 0.06 1.21 8.04 -51.93 -0.42 0.79 16 40 H 0.03 0.75 7.40 -51.93 -0.38 0.37 16 41 H -0.01 -0.14 5.78 -51.93 -0.30 -0.44 16 42 H 0.04 1.08 7.22 -51.93 -0.37 0.70 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 361.82 15.07 5.45 5.45 Total: -1.00 -32.52 361.82 -8.89 -41.40 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -7.15 Total: 3.65 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -2.09 Total: -3.96 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.15 Total: -52.31 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.32 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.52 -8.89 -41.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754324666.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.336 kcal (2) G-P(sol) polarization free energy of solvation -32.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds