Wall clock time and date at job start Tue Mar 31 2020 06:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37952 * 120.07635 * 2 1 4 4 C 1.38369 * 120.14557 * 180.30139 * 3 2 1 5 5 C 1.38355 * 120.28820 * 359.67522 * 4 3 2 6 6 C 1.37961 * 120.14956 * 0.04372 * 5 4 3 7 7 C 1.50701 * 120.07190 * 179.97438 * 6 5 4 8 8 C 1.39576 * 119.85201 * 359.97438 * 6 5 4 9 9 C 1.47842 * 120.14445 * 180.02562 * 8 6 5 10 10 O 1.21555 * 120.00162 * 89.99719 * 9 8 6 11 11 N 1.34775 * 119.99946 * 270.27560 * 9 8 6 12 12 C 1.46499 * 120.00343 * 179.72385 * 11 9 8 13 13 H 1.09005 * 109.46553 * 34.99905 * 12 11 9 14 14 C 1.52996 * 109.47114 * 275.00369 * 12 11 9 15 15 C 1.52993 * 109.47402 * 154.99807 * 12 11 9 16 16 N 1.46499 * 109.47344 * 305.00178 * 15 12 11 17 17 C 1.46498 * 120.00085 * 270.00097 * 16 15 12 18 18 C 1.36939 * 119.99956 * 89.99631 * 16 15 12 19 19 H 1.08002 * 119.99984 * 18.86899 * 18 16 15 20 20 C 1.38814 * 120.00188 * 198.86808 * 18 16 15 21 21 N 1.31624 * 119.99905 * 10.37421 * 20 18 16 22 22 Si 1.86795 * 120.00284 * 190.37475 * 20 18 16 23 23 H 1.48502 * 109.47072 * 59.99591 * 22 20 18 24 24 H 1.48497 * 109.47545 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.46904 * 300.00190 * 22 20 18 26 26 H 1.09005 * 109.46922 * 270.27857 * 1 2 3 27 27 H 1.08996 * 109.46950 * 30.27659 * 1 2 3 28 28 H 1.09000 * 109.47267 * 150.28172 * 1 2 3 29 29 H 1.08002 * 119.93028 * 359.97335 * 3 2 1 30 30 H 1.07994 * 119.85379 * 179.69445 * 4 3 2 31 31 H 1.07999 * 119.92419 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.47333 * 270.01791 * 7 6 5 33 33 H 1.08999 * 109.47241 * 30.02002 * 7 6 5 34 34 H 1.09003 * 109.46862 * 150.02377 * 7 6 5 35 35 H 0.97000 * 119.99906 * 359.72445 * 11 9 8 36 36 H 1.09005 * 109.47032 * 299.99243 * 14 12 11 37 37 H 1.08997 * 109.47942 * 59.99710 * 14 12 11 38 38 H 1.09008 * 109.47066 * 179.97438 * 14 12 11 39 39 H 1.09000 * 109.46955 * 65.00142 * 15 12 11 40 40 H 1.08999 * 109.47469 * 185.00169 * 15 12 11 41 41 H 1.08997 * 109.47063 * 95.37357 * 17 16 15 42 42 H 1.09004 * 109.47447 * 215.37292 * 17 16 15 43 43 H 1.08999 * 109.47113 * 335.37009 * 17 16 15 44 44 H 0.96998 * 120.00053 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1938 0.0000 4 6 3.5820 1.1955 -0.0063 5 6 4.2813 0.0016 -0.0059 6 6 3.6021 -1.1992 0.0000 7 6 4.3655 -2.4986 -0.0001 8 6 2.2064 -1.2080 0.0060 9 6 1.4720 -2.4911 0.0128 10 8 1.1746 -3.0156 1.0683 11 7 1.1372 -3.0821 -1.1513 12 6 0.4148 -4.3565 -1.1446 13 1 -0.2753 -4.3785 -0.3011 14 6 1.4137 -5.5083 -1.0163 15 6 -0.3699 -4.5049 -2.4496 16 7 -1.2407 -3.3408 -2.6309 17 6 -2.6043 -3.3556 -2.0955 18 6 -0.7800 -2.2388 -3.3007 19 1 0.0800 -2.3212 -3.9487 20 6 -1.4185 -1.0159 -3.1468 21 7 -2.3312 -0.8631 -2.2107 22 14 -0.9824 0.4131 -4.2680 23 1 -1.2597 0.0385 -5.6779 24 1 -1.7995 1.5975 -3.9011 25 1 0.4586 0.7390 -4.1167 26 1 -0.3633 0.0050 1.0277 27 1 -0.3633 0.8875 -0.5181 28 1 -0.3634 -0.8925 -0.5094 29 1 1.6585 2.1292 -0.0004 30 1 4.1185 2.1327 -0.0113 31 1 5.3612 0.0098 -0.0104 32 1 4.5455 -2.8142 -1.0278 33 1 5.3190 -2.3599 0.5096 34 1 3.7842 -3.2615 0.5177 35 1 1.3745 -2.6635 -1.9935 36 1 2.1038 -5.4863 -1.8598 37 1 1.9727 -5.4027 -0.0866 38 1 0.8761 -6.4566 -1.0109 39 1 0.3256 -4.5721 -3.2861 40 1 -0.9766 -5.4095 -2.4080 41 1 -2.6152 -2.8778 -1.1160 42 1 -3.2660 -2.8139 -2.7715 43 1 -2.9463 -4.3862 -2.0009 44 1 -2.7776 -0.0087 -2.1034 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754328868.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:54 Heat of formation + Delta-G solvation = 0.038890 kcal Electronic energy + Delta-G solvation = -24787.450298 eV Core-core repulsion = 21512.014686 eV Total energy + Delta-G solvation = -3275.435612 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.94787 -38.12207 -36.21118 -33.95569 -33.25876 -32.05140 -31.00611 -29.87789 -27.22246 -26.31021 -26.15546 -25.60238 -23.30206 -21.62889 -20.37491 -20.19493 -19.57852 -17.27963 -16.58156 -15.76676 -15.53525 -15.19006 -14.86647 -14.11651 -13.86996 -13.71302 -13.44460 -13.16303 -12.88864 -12.84194 -12.72070 -12.64264 -12.38820 -12.13959 -11.86721 -11.50460 -11.39398 -11.32683 -11.18597 -10.91990 -10.83829 -10.72573 -10.70682 -10.39929 -10.22735 -10.08394 -9.82168 -9.21904 -8.56401 -8.45132 -8.27918 -8.25308 -6.81932 -5.73630 -3.17611 1.46151 1.63512 3.27698 3.34424 3.39778 3.42123 3.81587 4.06976 4.45776 4.99824 5.03690 5.19776 5.31018 5.34535 5.45088 5.51759 5.65286 5.68872 5.73720 5.82456 5.88888 5.92858 5.98527 6.12776 6.16636 6.24561 6.25943 6.37263 6.38504 6.45658 6.51987 6.67155 6.71087 6.76127 6.87619 6.92101 7.10918 7.28834 7.31198 7.43905 7.68500 7.82331 8.30056 8.34657 8.93847 9.20768 9.83914 10.32494 11.29221 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.012521 B = 0.008427 C = 0.005928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.634115 B = 3321.884389 C = 4722.337211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.029 4.029 3 C -0.135 4.135 4 C -0.104 4.104 5 C -0.139 4.139 6 C -0.055 4.055 7 C -0.118 4.118 8 C -0.121 4.121 9 C 0.571 3.429 10 O -0.556 6.556 11 N -0.681 5.681 12 C 0.116 3.884 13 H 0.077 0.923 14 C -0.159 4.159 15 C 0.143 3.857 16 N -0.599 5.599 17 C 0.166 3.834 18 C -0.254 4.254 19 H 0.065 0.935 20 C 0.012 3.988 21 N -0.898 5.898 22 Si 0.889 3.111 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.282 1.282 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.110 0.890 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.405 0.595 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.026 0.974 42 H 0.049 0.951 43 H -0.007 1.007 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.320 -1.208 2.205 10.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.029 4.029 3 C -0.153 4.153 4 C -0.122 4.122 5 C -0.157 4.157 6 C -0.055 4.055 7 C -0.174 4.174 8 C -0.124 4.124 9 C 0.356 3.644 10 O -0.436 6.436 11 N -0.329 5.329 12 C 0.008 3.992 13 H 0.095 0.905 14 C -0.218 4.218 15 C 0.014 3.986 16 N -0.321 5.321 17 C 0.022 3.978 18 C -0.383 4.383 19 H 0.083 0.917 20 C -0.187 4.187 21 N -0.543 5.543 22 Si 0.720 3.280 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.208 1.208 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.128 0.872 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.241 0.759 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.068 0.932 43 H 0.011 0.989 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.939 -1.447 2.953 10.469 hybrid contribution 0.312 1.350 -0.939 1.674 sum 10.251 -0.097 2.014 10.448 Atomic orbital electron populations 1.21019 0.89008 1.06155 1.01926 1.20158 0.97169 0.91381 0.94217 1.20991 0.94148 0.97531 1.02599 1.21152 0.94213 0.97768 0.99077 1.20806 0.99372 0.91750 1.03744 1.19822 0.92030 0.95654 0.98015 1.20837 0.99674 0.94473 1.02454 1.19809 0.93225 0.93777 1.05545 1.18075 0.78406 0.83595 0.84313 1.90721 1.56051 1.65427 1.31398 1.45803 1.56037 1.22921 1.08160 1.21869 0.93115 0.81869 1.02324 0.90520 1.22156 0.99827 0.98513 1.01351 1.21168 0.92934 0.91063 0.93430 1.43899 1.09653 1.13747 1.64837 1.20825 0.84783 0.93529 0.98685 1.19036 1.13300 0.86743 1.19228 0.91710 1.24828 0.99395 0.96844 0.97610 1.70072 1.28425 1.23790 1.32043 0.86568 0.77986 0.82674 0.80809 1.21303 1.21620 1.20824 0.91936 0.91767 0.87181 0.85965 0.86243 0.86123 0.90934 0.91435 0.91227 0.75938 0.92993 0.92991 0.92249 0.93381 0.92954 0.95518 0.93203 0.98895 0.93756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 9.62 36.01 0.35 -2.22 16 2 C -0.03 -0.54 5.91 -104.22 -0.62 -1.16 16 3 C -0.13 -2.18 9.69 -39.64 -0.38 -2.56 16 4 C -0.10 -1.45 10.04 -39.49 -0.40 -1.85 16 5 C -0.14 -1.93 9.69 -39.64 -0.38 -2.32 16 6 C -0.05 -0.87 5.91 -104.22 -0.62 -1.49 16 7 C -0.12 -1.58 9.62 36.01 0.35 -1.23 16 8 C -0.12 -2.28 5.63 -104.97 -0.59 -2.87 16 9 C 0.57 11.67 4.15 -12.33 -0.05 11.62 16 10 O -0.56 -12.99 16.76 5.32 0.09 -12.90 16 11 N -0.68 -13.12 4.48 -54.76 -0.25 -13.37 16 12 C 0.12 2.13 2.88 -67.94 -0.20 1.94 16 13 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 14 C -0.16 -2.38 9.48 37.16 0.35 -2.02 16 15 C 0.14 2.67 5.36 -4.05 -0.02 2.65 16 16 N -0.60 -13.71 2.82 -181.12 -0.51 -14.22 16 17 C 0.17 3.92 9.00 59.85 0.54 4.46 16 18 C -0.25 -6.22 8.06 -15.06 -0.12 -6.34 16 19 H 0.07 1.56 7.83 -52.49 -0.41 1.15 16 20 C 0.01 0.30 4.96 -17.43 -0.09 0.21 16 21 N -0.90 -23.62 9.72 55.49 0.54 -23.08 16 22 Si 0.89 20.61 29.57 -169.99 -5.03 15.58 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.06 1.29 8.09 -51.93 -0.42 0.87 16 28 H 0.11 2.64 6.24 -51.93 -0.32 2.31 16 29 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 30 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 34 H 0.07 1.05 7.08 -51.93 -0.37 0.68 16 35 H 0.40 7.90 7.38 -40.82 -0.30 7.60 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 39 H 0.05 0.86 8.03 -51.93 -0.42 0.44 16 40 H 0.05 0.90 7.86 -51.93 -0.41 0.49 16 41 H 0.03 0.69 7.46 -51.93 -0.39 0.30 16 42 H 0.05 1.27 6.99 -51.93 -0.36 0.91 16 43 H -0.01 -0.16 7.83 -51.93 -0.41 -0.56 16 44 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 LS Contribution 358.34 15.07 5.40 5.40 Total: -1.00 -28.43 358.34 -8.77 -37.21 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -7.14 Total: 8.56 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -1.88 Total: -3.18 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: -0.22 Total: -50.68 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.09 Total: -12.90 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.43 -8.77 -37.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754328868.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.244 kcal (2) G-P(sol) polarization free energy of solvation -28.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds