Wall clock time and date at job start Tue Mar 31 2020 06:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37951 * 120.07402 * 2 1 4 4 C 1.38364 * 120.14816 * 180.27602 * 3 2 1 5 5 C 1.38352 * 120.28737 * 359.74229 * 4 3 2 6 6 C 1.37957 * 120.14996 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.07592 * 180.02562 * 6 5 4 8 8 C 1.39574 * 120.07294 * 179.78305 * 2 1 3 9 9 C 1.47849 * 120.14727 * 0.02562 * 8 2 1 10 10 O 1.21552 * 119.99621 * 269.72013 * 9 8 2 11 11 N 1.34769 * 119.99790 * 89.71852 * 9 8 2 12 12 C 1.46501 * 119.99823 * 180.02562 * 11 9 8 13 13 H 1.08995 * 109.47290 * 324.99940 * 12 11 9 14 14 C 1.53004 * 109.47073 * 85.00117 * 12 11 9 15 15 C 1.53000 * 109.47357 * 205.00091 * 12 11 9 16 16 N 1.46507 * 109.47096 * 54.99804 * 15 12 11 17 17 C 1.46490 * 120.00260 * 270.00350 * 16 15 12 18 18 C 1.36934 * 119.99708 * 90.00113 * 16 15 12 19 19 H 1.08000 * 120.00125 * 21.37615 * 18 16 15 20 20 C 1.38812 * 120.00119 * 201.37558 * 18 16 15 21 21 N 1.31619 * 119.99982 * 11.57540 * 20 18 16 22 22 Si 1.86797 * 120.00313 * 191.57547 * 20 18 16 23 23 H 1.48501 * 109.47030 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47283 * 119.99694 * 22 20 18 25 25 H 1.48500 * 109.47577 * 240.00100 * 22 20 18 26 26 H 1.09003 * 109.46977 * 270.21135 * 1 2 3 27 27 H 1.08996 * 109.47198 * 30.21490 * 1 2 3 28 28 H 1.09001 * 109.46821 * 150.21955 * 1 2 3 29 29 H 1.08007 * 119.92473 * 0.02562 * 3 2 1 30 30 H 1.07995 * 119.85515 * 179.76547 * 4 3 2 31 31 H 1.08007 * 119.92385 * 180.02562 * 5 4 3 32 32 H 1.08996 * 109.47321 * 269.98101 * 7 6 5 33 33 H 1.09002 * 109.47409 * 29.98281 * 7 6 5 34 34 H 1.09002 * 109.47367 * 149.97526 * 7 6 5 35 35 H 0.97002 * 120.00669 * 359.73207 * 11 9 8 36 36 H 1.09002 * 109.47116 * 180.02562 * 14 12 11 37 37 H 1.08996 * 109.46724 * 300.00113 * 14 12 11 38 38 H 1.09001 * 109.47145 * 60.00208 * 14 12 11 39 39 H 1.09002 * 109.47549 * 175.00085 * 15 12 11 40 40 H 1.09000 * 109.47483 * 295.00291 * 15 12 11 41 41 H 1.09004 * 109.47707 * 95.00949 * 17 16 15 42 42 H 1.08999 * 109.47396 * 215.01546 * 17 16 15 43 43 H 1.09003 * 109.47164 * 335.01487 * 17 16 15 44 44 H 0.97001 * 120.00193 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1938 0.0000 4 6 3.5819 1.1956 -0.0058 5 6 4.2813 0.0018 -0.0062 6 6 3.6022 -1.1990 -0.0014 7 6 4.3656 -2.4983 -0.0013 8 6 2.2064 -1.2078 0.0046 9 6 1.4721 -2.4911 0.0089 10 8 1.1743 -3.0173 1.0633 11 7 1.1329 -3.0772 -1.1563 12 6 0.4048 -4.3485 -1.1521 13 1 0.7388 -4.9557 -0.3108 14 6 -1.0952 -4.0766 -1.0212 15 6 0.6755 -5.0957 -2.4595 16 7 2.1207 -5.2508 -2.6431 17 6 2.8827 -4.2240 -3.3578 18 6 2.7592 -6.3557 -2.1465 19 1 2.1985 -7.2545 -1.9362 20 6 4.1272 -6.3207 -1.9134 21 7 4.7716 -5.1736 -1.9492 22 14 5.0534 -7.9013 -1.5491 23 1 4.1066 -9.0452 -1.5669 24 1 6.1009 -8.1104 -2.5808 25 1 5.6892 -7.8053 -0.2105 26 1 -0.3633 0.0038 1.0277 27 1 -0.3633 0.8880 -0.5171 28 1 -0.3633 -0.8920 -0.5104 29 1 1.6583 2.1292 0.0004 30 1 4.1183 2.1329 -0.0096 31 1 5.3613 0.0101 -0.0103 32 1 4.5459 -2.8139 -1.0289 33 1 5.3189 -2.3597 0.5088 34 1 3.7842 -3.2613 0.5165 35 1 1.3671 -2.6553 -1.9978 36 1 -1.6369 -5.0225 -1.0176 37 1 -1.2880 -3.5443 -0.0898 38 1 -1.4292 -3.4695 -1.8626 39 1 0.2066 -6.0789 -2.4199 40 1 0.2621 -4.5293 -3.2940 41 1 3.3120 -3.5246 -2.6403 42 1 3.6826 -4.6961 -3.9281 43 1 2.2205 -3.6869 -4.0370 44 1 5.7276 -5.1491 -1.7867 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754328877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:58 Heat of formation + Delta-G solvation = -0.625524 kcal Electronic energy + Delta-G solvation = -24543.560366 eV Core-core repulsion = 21268.095942 eV Total energy + Delta-G solvation = -3275.464423 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.02872 -38.18849 -36.23363 -33.98151 -33.31860 -32.07880 -30.97102 -29.99596 -27.31239 -26.38586 -26.15005 -25.57141 -23.37485 -21.59346 -20.42796 -20.24728 -19.70463 -17.20516 -16.80538 -15.76753 -15.58296 -15.21790 -14.82487 -14.21752 -13.88452 -13.72737 -13.40319 -13.30423 -13.02977 -12.89950 -12.74730 -12.59148 -12.42669 -12.10718 -11.92081 -11.58689 -11.39335 -11.29913 -11.08931 -11.01219 -10.85661 -10.76961 -10.74217 -10.53191 -10.18096 -9.94154 -9.84058 -9.28746 -8.59974 -8.52419 -8.34102 -8.30959 -6.74939 -5.72337 -3.15560 1.38554 1.56972 3.21519 3.38638 3.47043 3.47610 3.74545 3.97688 4.51370 4.92650 4.97231 5.12110 5.24412 5.35059 5.39826 5.49372 5.61845 5.67228 5.69685 5.76378 5.84440 5.86630 5.99797 6.05651 6.10998 6.17908 6.25426 6.29997 6.48237 6.51588 6.54496 6.60835 6.63178 6.67734 6.86589 6.90040 7.00644 7.21075 7.21701 7.36650 7.69746 7.83027 8.16112 8.38461 8.84837 9.24432 9.86221 10.33954 11.32529 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.016029 B = 0.006217 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.437714 B = 4502.711755 C = 5577.969309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.053 4.053 3 C -0.140 4.140 4 C -0.102 4.102 5 C -0.135 4.135 6 C -0.029 4.029 7 C -0.122 4.122 8 C -0.126 4.126 9 C 0.572 3.428 10 O -0.548 6.548 11 N -0.691 5.691 12 C 0.116 3.884 13 H 0.085 0.915 14 C -0.160 4.160 15 C 0.143 3.857 16 N -0.597 5.597 17 C 0.162 3.838 18 C -0.251 4.251 19 H 0.067 0.933 20 C 0.006 3.994 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.111 0.889 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.396 0.604 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.041 0.959 41 H 0.033 0.967 42 H 0.045 0.955 43 H -0.009 1.009 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.976 11.865 0.012 13.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.054 4.054 3 C -0.158 4.158 4 C -0.121 4.121 5 C -0.153 4.153 6 C -0.030 4.030 7 C -0.178 4.178 8 C -0.129 4.129 9 C 0.358 3.642 10 O -0.426 6.426 11 N -0.339 5.339 12 C 0.008 3.992 13 H 0.103 0.897 14 C -0.219 4.219 15 C 0.015 3.985 16 N -0.319 5.319 17 C 0.017 3.983 18 C -0.381 4.381 19 H 0.085 0.915 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.732 3.268 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.219 1.219 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.129 0.871 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.230 0.770 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.010 0.990 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.005 11.462 0.745 12.961 hybrid contribution 0.876 -0.534 -0.018 1.026 sum -5.129 10.928 0.726 12.094 Atomic orbital electron populations 1.20839 0.91181 1.02765 1.02651 1.19824 0.95773 0.91893 0.97902 1.20812 0.94232 0.96921 1.03842 1.21165 0.94155 0.97847 0.98892 1.20972 0.99907 0.91677 1.02717 1.20228 0.92050 0.96613 0.94067 1.20994 0.98525 0.92401 1.05858 1.19820 0.93732 0.93244 1.06090 1.18063 0.77981 0.83893 0.84278 1.90741 1.55549 1.64937 1.31373 1.45839 1.57059 1.23291 1.07730 1.21894 0.89245 0.84958 1.03088 0.89656 1.22163 0.97042 1.01482 1.01189 1.21183 0.86951 0.97689 0.92697 1.43889 1.01659 1.23045 1.63280 1.20884 0.92936 0.91090 0.93368 1.19208 0.91188 0.90120 1.37554 0.91491 1.24903 0.97539 0.96503 1.00271 1.69997 1.08003 1.22592 1.54111 0.86229 0.79842 0.83267 0.77418 1.20565 1.21847 1.21890 0.90912 0.91344 0.91402 0.86112 0.86196 0.85821 0.87082 0.92483 0.91175 0.77007 0.92076 0.93002 0.93187 0.92333 0.94075 0.94862 0.93643 0.99006 0.94039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 9.62 36.01 0.35 -1.14 16 2 C -0.05 -0.79 5.91 -104.23 -0.62 -1.41 16 3 C -0.14 -1.79 9.69 -39.64 -0.38 -2.18 16 4 C -0.10 -1.30 10.04 -39.49 -0.40 -1.69 16 5 C -0.13 -1.97 9.69 -39.64 -0.38 -2.35 16 6 C -0.03 -0.51 5.91 -104.23 -0.62 -1.13 16 7 C -0.12 -2.39 9.62 36.00 0.35 -2.04 16 8 C -0.13 -2.24 5.63 -104.97 -0.59 -2.83 16 9 C 0.57 11.40 4.15 -12.33 -0.05 11.35 16 10 O -0.55 -12.83 16.76 5.32 0.09 -12.74 16 11 N -0.69 -12.76 4.40 -54.75 -0.24 -13.00 16 12 C 0.12 2.15 2.88 -67.93 -0.20 1.95 16 13 H 0.09 1.92 7.58 -51.93 -0.39 1.53 16 14 C -0.16 -2.40 9.48 37.16 0.35 -2.04 16 15 C 0.14 2.72 5.33 -4.04 -0.02 2.70 16 16 N -0.60 -13.83 2.78 -181.12 -0.50 -14.34 16 17 C 0.16 3.64 7.59 59.84 0.45 4.09 16 18 C -0.25 -6.57 9.68 -15.06 -0.15 -6.72 16 19 H 0.07 1.76 7.84 -52.49 -0.41 1.35 16 20 C 0.01 0.16 5.13 -17.43 -0.09 0.07 16 21 N -0.90 -23.93 9.67 55.49 0.54 -23.40 16 22 Si 0.90 21.57 29.57 -169.99 -5.03 16.54 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 28 H 0.07 0.92 7.08 -51.93 -0.37 0.55 16 29 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 30 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 31 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 32 H 0.11 2.40 6.31 -51.93 -0.33 2.07 16 33 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 34 H 0.07 1.61 7.08 -51.93 -0.37 1.25 16 35 H 0.40 6.96 7.19 -40.82 -0.29 6.66 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 40 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 41 H 0.03 0.78 6.03 -51.93 -0.31 0.47 16 42 H 0.04 1.13 7.18 -51.93 -0.37 0.76 16 43 H -0.01 -0.17 7.84 -51.93 -0.41 -0.58 16 44 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 LS Contribution 356.11 15.07 5.37 5.37 Total: -1.00 -29.49 356.11 -8.79 -38.28 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -7.01 Total: 6.66 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -1.99 Total: -3.38 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: -0.21 Total: -50.73 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.49 -8.79 -38.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754328877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.653 kcal (2) G-P(sol) polarization free energy of solvation -29.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds