Wall clock time and date at job start Tue Mar 31 2020 06:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.46963 * 2 1 4 4 C 1.38236 * 120.00174 * 90.00585 * 3 2 1 5 5 C 1.38226 * 120.00449 * 179.97438 * 4 3 2 6 6 C 1.38239 * 120.00115 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.00532 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.47003 * 89.99747 * 7 6 5 9 9 C 1.46501 * 120.00118 * 90.00625 * 8 7 6 10 10 C 1.34779 * 119.99646 * 269.99740 * 8 7 6 11 11 O 1.21272 * 120.00293 * 0.02562 * 10 8 7 12 12 C 1.50698 * 119.99536 * 179.97438 * 10 8 7 13 13 N 1.46501 * 109.47039 * 180.02562 * 12 10 8 14 14 C 1.46504 * 120.00446 * 270.00303 * 13 12 10 15 15 C 1.36940 * 119.99692 * 90.00290 * 13 12 10 16 16 H 1.07999 * 120.00025 * 22.35707 * 15 13 12 17 17 C 1.38807 * 120.00258 * 202.35384 * 15 13 12 18 18 N 1.31624 * 119.99800 * 11.43289 * 17 15 13 19 19 Si 1.86794 * 120.00354 * 191.43219 * 17 15 13 20 20 H 1.48497 * 109.47437 * 59.99854 * 19 17 15 21 21 H 1.48502 * 109.47165 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46993 * 299.99888 * 19 17 15 23 23 C 1.38236 * 119.99732 * 0.24865 * 6 5 4 24 24 C 1.38237 * 120.00097 * 270.02656 * 3 2 1 25 25 H 1.09002 * 109.46880 * 299.99667 * 1 2 3 26 26 H 1.08996 * 109.47668 * 60.00018 * 1 2 3 27 27 H 1.09004 * 109.46747 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46880 * 240.00333 * 2 1 3 29 29 H 1.09000 * 109.47619 * 120.00490 * 2 1 3 30 30 H 1.08000 * 119.99556 * 359.97438 * 4 3 2 31 31 H 1.08004 * 120.00364 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.46691 * 329.99550 * 7 6 5 33 33 H 1.08996 * 109.46797 * 209.99848 * 7 6 5 34 34 H 1.09003 * 109.46592 * 269.99990 * 9 8 7 35 35 H 1.09004 * 109.46901 * 29.99102 * 9 8 7 36 36 H 1.08998 * 109.47330 * 149.99605 * 9 8 7 37 37 H 1.08996 * 109.47905 * 300.00444 * 12 10 8 38 38 H 1.09001 * 109.47295 * 60.00842 * 12 10 8 39 39 H 1.09000 * 109.46887 * 94.12392 * 14 13 12 40 40 H 1.08997 * 109.46881 * 214.11989 * 14 13 12 41 41 H 1.08998 * 109.46697 * 334.12112 * 14 13 12 42 42 H 0.96996 * 120.00221 * 180.02562 * 18 17 15 43 43 H 1.08000 * 120.00326 * 179.72820 * 23 6 5 44 44 H 1.07998 * 120.00262 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7240 3.3755 1.1972 6 6 2.9543 4.0273 0.0001 7 6 3.4566 5.4481 0.0000 8 7 4.9216 5.4481 -0.0001 9 6 5.6540 5.4483 -1.2688 10 6 5.5955 5.4482 1.1672 11 8 4.9892 5.4478 2.2174 12 6 7.1024 5.4476 1.1670 13 7 7.5909 5.4472 2.5482 14 6 7.8355 6.7157 3.2392 15 6 7.8187 4.2610 3.1935 16 1 7.9941 3.3609 2.6229 17 6 7.8244 4.2155 4.5808 18 7 7.3932 5.2473 5.2749 19 14 8.4439 2.6898 5.4627 20 1 9.8600 2.4432 5.0900 21 1 8.3460 2.8925 6.9306 22 1 7.6176 1.5205 5.0688 23 6 2.7184 3.3776 -1.1971 24 6 2.2621 2.0727 -1.1972 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.0825 1.5634 2.1324 31 1 2.9037 3.8847 2.1325 32 1 3.0932 5.9619 0.8901 33 1 3.0932 5.9619 -0.8899 34 1 5.8356 4.4206 -1.5835 35 1 5.0648 5.9621 -2.0284 36 1 6.6064 5.9621 -1.1385 37 1 7.4655 4.5575 0.6534 38 1 7.4661 6.3374 0.6531 39 1 6.9512 6.9935 3.8126 40 1 8.6852 6.6044 3.9128 41 1 8.0523 7.4927 2.5061 42 1 7.3975 5.2157 6.2443 43 1 2.8941 3.8882 -2.1324 44 1 2.0822 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972736.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:38 Heat of formation + Delta-G solvation = 14.562135 kcal Electronic energy + Delta-G solvation = -23362.920290 eV Core-core repulsion = 20088.114453 eV Total energy + Delta-G solvation = -3274.805837 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.68122 -38.61606 -35.59393 -34.73875 -33.90896 -31.29255 -30.73433 -30.32398 -27.50635 -26.71213 -25.76226 -25.03297 -23.01346 -22.51563 -21.38669 -20.39016 -18.52954 -16.73143 -16.33131 -16.21674 -15.64922 -15.29860 -15.22743 -14.63220 -14.36248 -13.72970 -13.70789 -13.41626 -13.19412 -13.13887 -12.86348 -12.72841 -12.39114 -12.26818 -11.96204 -11.72836 -11.68624 -11.52998 -11.16220 -11.09543 -10.80566 -10.78349 -10.67468 -10.61147 -10.30302 -9.98202 -9.82347 -9.01137 -8.71679 -8.49363 -8.33402 -8.10962 -6.69103 -5.63054 -3.09372 1.44794 1.61087 3.42891 3.48886 3.49704 3.53454 3.63640 4.07112 4.56837 4.74628 4.83143 5.03219 5.10411 5.15977 5.27048 5.29688 5.37546 5.48543 5.52168 5.60965 5.62211 5.66835 5.69519 5.77811 5.79324 5.89604 5.98855 6.00603 6.04965 6.20666 6.23730 6.29337 6.35020 6.59118 6.77540 6.77972 6.87209 7.02697 7.20902 7.44312 7.80883 7.90345 8.03914 8.45476 9.15115 9.30429 9.91391 10.38965 11.41640 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.014420 B = 0.004737 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.332685 B = 5909.202253 C = 7262.086674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.086 4.086 4 C -0.119 4.119 5 C -0.087 4.087 6 C -0.103 4.103 7 C 0.153 3.847 8 N -0.630 5.630 9 C 0.087 3.913 10 C 0.473 3.527 11 O -0.503 6.503 12 C 0.135 3.865 13 N -0.573 5.573 14 C 0.165 3.835 15 C -0.257 4.257 16 H 0.067 0.933 17 C 0.010 3.990 18 N -0.897 5.897 19 Si 0.904 3.096 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.284 1.284 23 C -0.108 4.108 24 C -0.127 4.127 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.118 0.882 31 H 0.130 0.870 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.033 0.967 40 H 0.048 0.952 41 H -0.005 1.005 42 H 0.252 0.748 43 H 0.116 0.884 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.964 -3.611 -15.921 19.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.138 4.138 5 C -0.105 4.105 6 C -0.104 4.104 7 C 0.030 3.970 8 N -0.369 5.369 9 C -0.057 4.057 10 C 0.259 3.741 11 O -0.375 6.375 12 C 0.003 3.997 13 N -0.293 5.293 14 C 0.020 3.980 15 C -0.387 4.387 16 H 0.085 0.915 17 C -0.189 4.189 18 N -0.541 5.541 19 Si 0.734 3.266 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.210 1.210 23 C -0.127 4.127 24 C -0.145 4.145 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.136 0.864 31 H 0.148 0.852 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.052 0.948 40 H 0.067 0.933 41 H 0.013 0.987 42 H 0.062 0.938 43 H 0.134 0.866 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.224 -3.540 -15.052 18.537 hybrid contribution 0.081 -0.931 0.439 1.032 sum -10.143 -4.470 -14.613 18.341 Atomic orbital electron populations 1.21739 0.94929 1.01410 1.02160 1.20524 0.95994 0.92999 1.02668 1.19846 0.99519 0.95977 0.93308 1.21052 1.00249 0.95047 0.97402 1.21289 0.96149 0.94521 0.98565 1.20320 0.99386 0.97534 0.93161 1.20230 0.81829 0.92113 1.02810 1.48573 1.04804 1.76574 1.06953 1.21643 0.97148 1.01115 0.85802 1.23664 0.93170 0.74840 0.82441 1.90666 1.69826 1.46225 1.30737 1.21039 0.87987 1.00458 0.90259 1.43882 1.71932 1.03924 1.09582 1.20847 1.00418 0.83720 0.93005 1.19090 1.42672 0.87832 0.89123 0.91487 1.25050 0.99693 0.97320 0.96852 1.70087 1.48452 1.29956 1.05556 0.86356 0.78705 0.82869 0.78681 1.20984 1.21577 1.21004 1.20937 0.99761 0.94775 0.97195 1.20884 1.01466 0.94982 0.97132 0.92545 0.92687 0.92625 0.91296 0.91123 0.86384 0.85216 0.89631 0.90844 0.93459 0.92118 0.91027 0.91119 0.91693 0.94837 0.93290 0.98657 0.93776 0.86589 0.86642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.89 37.16 0.37 -0.93 16 2 C -0.08 -0.87 6.06 -27.88 -0.17 -1.04 16 3 C -0.09 -1.12 5.13 -104.62 -0.54 -1.66 16 4 C -0.12 -1.80 9.70 -39.59 -0.38 -2.19 16 5 C -0.09 -1.47 9.70 -39.59 -0.38 -1.86 16 6 C -0.10 -1.55 5.46 -104.62 -0.57 -2.13 16 7 C 0.15 2.28 5.58 -5.19 -0.03 2.25 16 8 N -0.63 -10.21 2.86 -182.96 -0.52 -10.73 16 9 C 0.09 1.01 10.29 59.85 0.62 1.62 16 10 C 0.47 10.08 7.74 -10.99 -0.09 10.00 16 11 O -0.50 -13.23 15.54 5.56 0.09 -13.15 16 12 C 0.14 2.84 4.74 -5.19 -0.02 2.81 16 13 N -0.57 -15.13 2.41 -182.50 -0.44 -15.57 16 14 C 0.16 4.27 9.01 59.85 0.54 4.81 16 15 C -0.26 -7.41 9.67 -15.06 -0.15 -7.56 16 16 H 0.07 1.88 7.84 -52.49 -0.41 1.47 16 17 C 0.01 0.30 5.13 -17.43 -0.09 0.21 16 18 N -0.90 -27.50 10.59 55.49 0.59 -26.91 16 19 Si 0.90 22.74 29.57 -169.99 -5.03 17.71 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 23 C -0.11 -1.38 9.70 -39.58 -0.38 -1.77 16 24 C -0.13 -1.56 9.70 -39.58 -0.38 -1.94 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 29 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 30 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 31 H 0.13 2.53 7.58 -52.48 -0.40 2.13 16 32 H 0.09 1.44 7.37 -51.93 -0.38 1.06 16 33 H 0.07 0.84 7.83 -51.93 -0.41 0.44 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.54 7.89 -51.93 -0.41 0.13 16 36 H 0.07 0.77 6.44 -51.93 -0.33 0.44 16 37 H 0.07 1.39 8.00 -51.93 -0.42 0.98 16 38 H 0.07 1.16 7.12 -51.93 -0.37 0.79 16 39 H 0.03 0.97 7.42 -51.93 -0.39 0.58 16 40 H 0.05 1.33 7.18 -51.93 -0.37 0.96 16 41 H -0.01 -0.11 7.85 -51.93 -0.41 -0.52 16 42 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 44 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 363.56 15.07 5.48 5.48 Total: -1.00 -34.84 363.56 -8.73 -43.57 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.23 Total: -1.02 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -1.66 Total: 0.62 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.38 Total: -53.21 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.09 Total: -13.15 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.03 Total: 17.71 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.84 -8.73 -43.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972736.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.128 kcal (2) G-P(sol) polarization free energy of solvation -34.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds