Wall clock time and date at job start Tue Mar 31 2020 06:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46908 * 2 1 4 4 C 1.52996 * 109.50236 * 304.50260 * 3 2 1 5 5 O 1.42901 * 109.47083 * 305.27168 * 4 3 2 6 6 C 1.53117 * 109.50321 * 184.38021 * 3 2 1 7 7 C 1.53095 * 109.15395 * 297.71650 * 6 3 2 8 8 C 1.53037 * 109.29041 * 302.33675 * 7 6 3 9 9 N 1.46845 * 109.51359 * 59.18439 * 8 7 6 10 10 C 1.38824 * 110.99784 * 174.16281 * 9 8 7 11 11 C 1.39793 * 119.58637 * 303.95853 * 10 9 8 12 12 C 1.38604 * 119.48574 * 179.97438 * 11 10 9 13 13 C 1.38379 * 118.68551 * 0.02562 * 12 11 10 14 14 C 1.40556 * 119.14839 * 359.97438 * 13 12 11 15 15 C 1.41312 * 119.78310 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00350 * 0.02562 * 15 14 13 17 17 C 1.40031 * 119.99855 * 179.97438 * 15 14 13 18 18 N 1.30740 * 120.00141 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00014 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47177 * 59.99700 * 19 17 15 21 21 H 1.48494 * 109.47460 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47142 * 300.00167 * 19 17 15 23 23 N 1.31958 * 119.57854 * 123.68337 * 10 9 8 24 24 C 1.46841 * 111.19981 * 298.26592 * 9 8 7 25 25 H 1.08997 * 109.46979 * 181.13938 * 1 2 3 26 26 H 1.08994 * 109.47119 * 301.13680 * 1 2 3 27 27 H 1.08997 * 109.47394 * 61.13927 * 1 2 3 28 28 H 1.08995 * 109.46852 * 240.00623 * 2 1 3 29 29 H 1.08993 * 109.46880 * 120.00039 * 2 1 3 30 30 H 1.08999 * 109.47652 * 65.27559 * 4 3 2 31 31 H 1.08999 * 109.46909 * 185.27724 * 4 3 2 32 32 H 0.96704 * 114.00201 * 180.02562 * 5 4 3 33 33 H 1.08999 * 109.51892 * 57.61950 * 6 3 2 34 34 H 1.08998 * 109.52054 * 177.74259 * 6 3 2 35 35 H 1.09004 * 109.48391 * 182.39746 * 7 6 3 36 36 H 1.08998 * 109.50940 * 62.28976 * 7 6 3 37 37 H 1.08998 * 109.46172 * 299.17539 * 8 7 6 38 38 H 1.08994 * 109.46331 * 179.19896 * 8 7 6 39 39 H 1.07992 * 120.26056 * 0.02562 * 11 10 9 40 40 H 1.08002 * 120.65224 * 180.02562 * 12 11 10 41 41 H 1.08001 * 120.42788 * 180.02562 * 13 12 11 42 42 H 0.96999 * 120.00346 * 179.97438 * 18 17 15 43 43 H 1.09003 * 109.45930 * 181.75882 * 24 9 8 44 44 H 1.08999 * 109.46503 * 301.73285 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4400 2.1964 -1.1885 5 8 1.7248 1.4866 -2.3956 6 6 3.5672 1.4449 -0.1102 7 6 4.1602 0.7406 1.1130 8 6 3.6854 1.4490 2.3837 9 7 2.2184 1.4192 2.4429 10 6 1.7585 1.9373 3.6460 11 6 2.2054 1.3864 4.8505 12 6 1.7452 1.9056 6.0504 13 6 0.8507 2.9609 6.0180 14 6 0.4389 3.4713 4.7749 15 6 -0.4738 4.5491 4.7261 16 1 -0.8522 4.9782 5.6421 17 6 -0.8867 5.0615 3.4901 18 7 -0.4282 4.5425 2.3811 19 14 -2.0937 6.4858 3.4256 20 1 -1.5118 7.6598 4.1244 21 1 -2.3684 6.8381 2.0094 22 1 -3.3609 6.0913 4.0918 23 7 0.9093 2.9473 3.6380 24 6 1.6264 2.1306 1.3029 25 1 -0.3633 -1.0274 0.0204 26 1 -0.3633 0.5314 0.8796 27 1 -0.3634 0.4960 -0.9000 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 0.3606 2.2770 -1.0603 31 1 1.8750 3.1944 -1.2427 32 1 1.3738 1.9082 -3.1920 33 1 3.8678 0.9175 -1.0156 34 1 3.9279 2.4727 -0.1506 35 1 5.2484 0.7766 1.0612 36 1 3.8303 -0.2981 1.1305 37 1 4.0275 2.4839 2.3720 38 1 4.0945 0.9412 3.2570 39 1 2.9043 0.5631 4.8463 40 1 2.0783 1.4947 6.9920 41 1 0.4744 3.3874 6.9361 42 1 -0.7145 4.8972 1.5249 43 1 0.5401 2.1180 1.3914 44 1 1.9782 3.1623 1.2961 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320751663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:53 Heat of formation + Delta-G solvation = -17.597037 kcal Electronic energy + Delta-G solvation = -24688.801739 eV Core-core repulsion = 21412.601376 eV Total energy + Delta-G solvation = -3276.200363 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.87985 -38.04343 -36.27528 -34.16725 -33.24261 -32.19411 -30.41093 -29.31811 -28.82232 -25.94101 -25.31603 -23.77593 -23.23311 -21.52791 -21.04467 -20.00033 -17.78548 -17.36160 -17.03088 -16.17293 -15.16710 -14.90016 -14.61782 -14.47737 -14.34146 -13.96626 -13.73928 -13.34947 -13.20490 -12.78138 -12.48239 -12.34558 -12.04786 -11.85471 -11.61562 -11.47502 -11.22945 -11.17522 -11.07204 -10.75220 -10.63187 -10.51131 -10.36761 -10.09926 -9.94784 -9.81475 -9.67969 -9.52475 -9.38489 -8.63165 -8.01135 -7.59384 -6.91417 -6.42787 -4.52733 2.74649 3.02662 3.05124 3.08152 3.21460 3.92354 4.26662 4.65287 4.86946 5.05147 5.16004 5.22952 5.50851 5.57946 5.73619 5.74667 5.81037 5.88492 5.92328 5.96796 6.08066 6.11703 6.13285 6.18041 6.32798 6.33326 6.47294 6.48930 6.53176 6.63329 6.67089 6.69350 6.80279 6.85278 6.87857 6.97507 7.13776 7.21998 7.50812 7.71655 7.78241 7.81072 7.87512 8.19492 8.39228 8.69811 8.99547 10.08755 10.29098 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.014041 B = 0.006646 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.676648 B = 4212.122186 C = 5589.074717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.058 4.058 4 C 0.087 3.913 5 O -0.570 6.570 6 C -0.105 4.105 7 C -0.117 4.117 8 C 0.064 3.936 9 N -0.474 5.474 10 C 0.323 3.677 11 C -0.321 4.321 12 C -0.045 4.045 13 C -0.297 4.297 14 C 0.276 3.724 15 C -0.432 4.432 16 H 0.082 0.918 17 C 0.073 3.927 18 N -0.717 5.717 19 Si 0.905 3.095 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.265 1.265 23 N -0.508 5.508 24 C 0.092 3.908 25 H 0.043 0.957 26 H 0.061 0.939 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.040 0.960 32 H 0.371 0.629 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.270 0.730 43 H 0.099 0.901 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.007 -3.637 -7.547 9.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.059 4.059 4 C 0.009 3.991 5 O -0.375 6.375 6 C -0.143 4.143 7 C -0.155 4.155 8 C -0.063 4.063 9 N -0.192 5.192 10 C 0.085 3.915 11 C -0.346 4.346 12 C -0.070 4.070 13 C -0.319 4.319 14 C 0.149 3.851 15 C -0.464 4.464 16 H 0.100 0.900 17 C -0.152 4.152 18 N -0.338 5.338 19 Si 0.729 3.271 20 H -0.191 1.191 21 H -0.203 1.203 22 H -0.190 1.190 23 N -0.225 5.225 24 C -0.035 4.035 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.216 0.784 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.081 0.919 43 H 0.117 0.883 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.878 -4.156 -8.193 9.972 hybrid contribution -0.361 1.485 0.521 1.614 sum 3.517 -2.672 -7.673 8.853 Atomic orbital electron populations 1.21815 0.96515 1.00683 1.01712 1.21335 0.95424 0.95165 1.01391 1.20747 0.94863 0.96556 0.93700 1.22173 0.98971 0.93705 0.84203 1.86462 1.81136 1.53395 1.16465 1.21575 0.94767 1.00136 0.97826 1.21643 0.99140 1.00462 0.94224 1.22091 0.86900 0.99069 0.98230 1.58996 1.06298 1.52482 1.01436 1.19824 0.93254 0.90220 0.88190 1.20695 1.13173 1.08450 0.92241 1.20695 0.95265 0.94992 0.96002 1.21627 1.08054 1.04121 0.98141 1.18317 0.89766 0.90966 0.86013 1.19531 1.21039 1.12509 0.93310 0.90023 1.26007 0.96237 0.97407 0.95523 1.70108 1.32269 1.33461 0.97988 0.86441 0.81121 0.81517 0.78031 1.19061 1.20326 1.18995 1.68669 1.14772 1.09637 1.29470 1.21747 1.01787 0.94199 0.85792 0.93813 0.91961 0.93423 0.92723 0.90999 0.93083 0.94138 0.78352 0.91708 0.92775 0.91988 0.91029 0.94874 0.90587 0.88736 0.88693 0.88586 0.91921 0.88258 0.93678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.18 37.16 0.34 -2.03 16 2 C -0.10 -1.51 4.21 -26.73 -0.11 -1.62 16 3 C -0.06 -0.93 0.38 -154.43 -0.06 -0.99 16 4 C 0.09 1.27 5.27 37.16 0.20 1.47 16 5 O -0.57 -7.36 12.46 -35.23 -0.44 -7.80 16 6 C -0.11 -1.56 4.66 -26.62 -0.12 -1.69 16 7 C -0.12 -1.69 5.74 -26.66 -0.15 -1.84 16 8 C 0.06 1.13 5.25 -3.83 -0.02 1.11 16 9 N -0.47 -9.67 3.88 -173.21 -0.67 -10.35 16 10 C 0.32 7.77 6.41 -155.32 -0.99 6.77 16 11 C -0.32 -7.35 9.20 -38.87 -0.36 -7.70 16 12 C -0.05 -1.03 10.15 -39.39 -0.40 -1.43 16 13 C -0.30 -7.35 9.83 -38.66 -0.38 -7.73 16 14 C 0.28 7.46 6.55 -85.00 -0.56 6.91 16 15 C -0.43 -11.37 9.14 -37.74 -0.34 -11.72 16 16 H 0.08 2.03 7.85 -52.49 -0.41 1.62 16 17 C 0.07 1.80 5.50 -17.34 -0.10 1.71 16 18 N -0.72 -17.95 11.46 55.55 0.64 -17.31 16 19 Si 0.90 18.26 29.56 -169.99 -5.02 13.23 16 20 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 23 N -0.51 -13.44 6.16 -10.33 -0.06 -13.51 16 24 C 0.09 1.83 3.13 -3.84 -0.01 1.81 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 1.14 6.48 -51.93 -0.34 0.80 16 27 H 0.05 0.71 6.54 -51.93 -0.34 0.37 16 28 H 0.05 0.84 7.71 -51.93 -0.40 0.44 16 29 H 0.07 1.21 6.11 -51.93 -0.32 0.90 16 30 H 0.05 0.76 6.70 -51.93 -0.35 0.41 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.37 3.12 9.12 45.56 0.42 3.54 16 33 H 0.06 0.92 7.91 -51.93 -0.41 0.51 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.03 6.68 -51.93 -0.35 0.68 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 1.29 6.67 -51.93 -0.35 0.95 16 39 H 0.09 1.96 7.15 -52.49 -0.38 1.59 16 40 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 42 H 0.27 6.17 8.29 -40.82 -0.34 5.83 16 43 H 0.10 2.24 6.06 -51.93 -0.31 1.93 16 44 H 0.04 1.00 8.10 -51.93 -0.42 0.58 16 LS Contribution 337.62 15.07 5.09 5.09 Total: -1.00 -28.30 337.62 -9.59 -37.90 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -6.05 Total: 9.73 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -3.07 Total: -16.98 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: -0.10 Total: -41.17 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.44 Total: -7.80 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.02 Total: 13.23 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.30 -9.59 -37.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320751663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.300 kcal (2) G-P(sol) polarization free energy of solvation -28.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds