Wall clock time and date at job start Tue Mar 31 2020 06:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46908 * 2 1 4 4 C 1.52996 * 109.50236 * 304.50260 * 3 2 1 5 5 O 1.42901 * 109.47083 * 305.27168 * 4 3 2 6 6 C 1.53117 * 109.50321 * 184.38021 * 3 2 1 7 7 C 1.53095 * 109.15395 * 297.71650 * 6 3 2 8 8 C 1.53037 * 109.29041 * 302.33675 * 7 6 3 9 9 N 1.46845 * 109.51359 * 59.18439 * 8 7 6 10 10 C 1.38824 * 110.99784 * 174.16281 * 9 8 7 11 11 C 1.39793 * 119.58637 * 303.95853 * 10 9 8 12 12 C 1.38604 * 119.48574 * 179.97438 * 11 10 9 13 13 C 1.38379 * 118.68551 * 0.02562 * 12 11 10 14 14 C 1.40556 * 119.14839 * 359.97438 * 13 12 11 15 15 C 1.41312 * 119.78310 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00350 * 0.02562 * 15 14 13 17 17 C 1.40031 * 119.99855 * 179.97438 * 15 14 13 18 18 N 1.30740 * 120.00141 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00014 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47177 * 59.99700 * 19 17 15 21 21 H 1.48494 * 109.47460 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47142 * 300.00167 * 19 17 15 23 23 N 1.31958 * 119.57854 * 123.68337 * 10 9 8 24 24 C 1.46841 * 111.19981 * 298.26592 * 9 8 7 25 25 H 1.08997 * 109.46979 * 181.13938 * 1 2 3 26 26 H 1.08994 * 109.47119 * 301.13680 * 1 2 3 27 27 H 1.08997 * 109.47394 * 61.13927 * 1 2 3 28 28 H 1.08995 * 109.46852 * 240.00623 * 2 1 3 29 29 H 1.08993 * 109.46880 * 120.00039 * 2 1 3 30 30 H 1.08999 * 109.47652 * 65.27559 * 4 3 2 31 31 H 1.08999 * 109.46909 * 185.27724 * 4 3 2 32 32 H 0.96704 * 114.00201 * 180.02562 * 5 4 3 33 33 H 1.08999 * 109.51892 * 57.61950 * 6 3 2 34 34 H 1.08998 * 109.52054 * 177.74259 * 6 3 2 35 35 H 1.09004 * 109.48391 * 182.39746 * 7 6 3 36 36 H 1.08998 * 109.50940 * 62.28976 * 7 6 3 37 37 H 1.08998 * 109.46172 * 299.17539 * 8 7 6 38 38 H 1.08994 * 109.46331 * 179.19896 * 8 7 6 39 39 H 1.07992 * 120.26056 * 0.02562 * 11 10 9 40 40 H 1.08002 * 120.65224 * 180.02562 * 12 11 10 41 41 H 1.08001 * 120.42788 * 180.02562 * 13 12 11 42 42 H 0.96999 * 120.00346 * 179.97438 * 18 17 15 43 43 H 1.09003 * 109.45930 * 181.75882 * 24 9 8 44 44 H 1.08999 * 109.46503 * 301.73285 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4400 2.1964 -1.1885 5 8 1.7248 1.4866 -2.3956 6 6 3.5672 1.4449 -0.1102 7 6 4.1602 0.7406 1.1130 8 6 3.6854 1.4490 2.3837 9 7 2.2184 1.4192 2.4429 10 6 1.7585 1.9373 3.6460 11 6 2.2054 1.3864 4.8505 12 6 1.7452 1.9056 6.0504 13 6 0.8507 2.9609 6.0180 14 6 0.4389 3.4713 4.7749 15 6 -0.4738 4.5491 4.7261 16 1 -0.8522 4.9782 5.6421 17 6 -0.8867 5.0615 3.4901 18 7 -0.4282 4.5425 2.3811 19 14 -2.0937 6.4858 3.4256 20 1 -1.5118 7.6598 4.1244 21 1 -2.3684 6.8381 2.0094 22 1 -3.3609 6.0913 4.0918 23 7 0.9093 2.9473 3.6380 24 6 1.6264 2.1306 1.3029 25 1 -0.3633 -1.0274 0.0204 26 1 -0.3633 0.5314 0.8796 27 1 -0.3634 0.4960 -0.9000 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 0.3606 2.2770 -1.0603 31 1 1.8750 3.1944 -1.2427 32 1 1.3738 1.9082 -3.1920 33 1 3.8678 0.9175 -1.0156 34 1 3.9279 2.4727 -0.1506 35 1 5.2484 0.7766 1.0612 36 1 3.8303 -0.2981 1.1305 37 1 4.0275 2.4839 2.3720 38 1 4.0945 0.9412 3.2570 39 1 2.9043 0.5631 4.8463 40 1 2.0783 1.4947 6.9920 41 1 0.4744 3.3874 6.9361 42 1 -0.7145 4.8972 1.5249 43 1 0.5401 2.1180 1.3914 44 1 1.9782 3.1623 1.2961 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320751663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:52 Heat of formation + Delta-G solvation = -34.382578 kcal Electronic energy + Delta-G solvation = -24689.529615 eV Core-core repulsion = 21412.601376 eV Total energy + Delta-G solvation = -3276.928239 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.38905 -39.69727 -37.58519 -35.74114 -34.89304 -33.59548 -32.24694 -30.67464 -30.61846 -27.69391 -26.68202 -25.40272 -24.56650 -23.19076 -22.61598 -21.65839 -19.46059 -18.87178 -18.14524 -17.87881 -16.65304 -16.43846 -16.31150 -16.09052 -15.86215 -15.39194 -15.21095 -14.81883 -14.69520 -14.36606 -13.82091 -13.79010 -13.62894 -13.41261 -13.03478 -12.88536 -12.80939 -12.73788 -12.63454 -12.52683 -12.27174 -11.94364 -11.81475 -11.67655 -11.35283 -11.21047 -11.05124 -10.99177 -10.71845 -10.39366 -9.89169 -9.47960 -8.72226 -8.27500 -6.48830 0.91141 1.20437 1.39181 1.49587 1.53737 2.22020 2.77067 2.94008 3.51288 3.76555 3.89648 3.91753 4.00813 4.19258 4.25357 4.38160 4.45217 4.48533 4.56939 4.58820 4.67920 4.70546 4.76389 4.84922 4.88479 4.90840 4.94331 4.99702 5.07844 5.12476 5.18494 5.23129 5.28587 5.30636 5.38679 5.44214 5.58096 5.65314 5.71687 5.90717 6.01966 6.05163 6.35713 6.53416 6.80228 6.95179 7.08446 8.19825 8.45191 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.014041 B = 0.006646 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.676648 B = 4212.122186 C = 5589.074717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.056 4.056 4 C 0.096 3.904 5 O -0.572 6.572 6 C -0.101 4.101 7 C -0.108 4.108 8 C 0.062 3.938 9 N -0.471 5.471 10 C 0.305 3.695 11 C -0.324 4.324 12 C -0.042 4.042 13 C -0.322 4.322 14 C 0.241 3.759 15 C -0.467 4.467 16 H 0.084 0.916 17 C 0.029 3.971 18 N -0.741 5.741 19 Si 0.980 3.020 20 H -0.262 1.262 21 H -0.268 1.268 22 H -0.262 1.262 23 N -0.532 5.532 24 C 0.111 3.889 25 H 0.056 0.944 26 H 0.028 0.972 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.042 0.958 31 H 0.039 0.961 32 H 0.393 0.607 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.016 0.984 38 H 0.084 0.916 39 H 0.119 0.881 40 H 0.132 0.868 41 H 0.104 0.896 42 H 0.276 0.724 43 H 0.065 0.935 44 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.860 -4.443 -8.768 10.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.125 4.125 3 C -0.057 4.057 4 C 0.018 3.982 5 O -0.380 6.380 6 C -0.139 4.139 7 C -0.145 4.145 8 C -0.064 4.064 9 N -0.189 5.189 10 C 0.067 3.933 11 C -0.349 4.349 12 C -0.066 4.066 13 C -0.344 4.344 14 C 0.114 3.886 15 C -0.499 4.499 16 H 0.102 0.898 17 C -0.193 4.193 18 N -0.363 5.363 19 Si 0.801 3.199 20 H -0.186 1.186 21 H -0.192 1.192 22 H -0.186 1.186 23 N -0.251 5.251 24 C -0.016 4.016 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.242 0.758 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.034 0.966 38 H 0.102 0.898 39 H 0.137 0.863 40 H 0.149 0.851 41 H 0.122 0.878 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 4.749 -4.979 -9.431 11.674 hybrid contribution -0.575 1.654 0.889 1.963 sum 4.174 -3.325 -8.542 10.072 Atomic orbital electron populations 1.21748 0.96823 1.01095 1.00509 1.21260 0.95067 0.94660 1.01486 1.20694 0.96251 0.96544 0.92172 1.21920 0.98212 0.93490 0.84595 1.86394 1.81331 1.53506 1.16723 1.21555 0.93326 1.00252 0.98748 1.21633 1.00862 1.00058 0.91971 1.22232 0.84849 0.98703 1.00607 1.59098 1.08017 1.51438 1.00354 1.20369 0.92942 0.89869 0.90141 1.21030 1.13150 1.08755 0.91940 1.21086 0.94009 0.93940 0.97590 1.21802 1.09413 1.05443 0.97787 1.18810 0.90666 0.91897 0.87180 1.19862 1.22192 1.13459 0.94373 0.89778 1.26850 0.97851 0.99937 0.94674 1.70210 1.33022 1.34531 0.98526 0.85295 0.78393 0.77761 0.78438 1.18650 1.19182 1.18642 1.68662 1.15851 1.10824 1.29721 1.21451 0.99599 0.92889 0.87694 0.92445 0.95319 0.92537 0.91213 0.92017 0.93991 0.94239 0.75810 0.89992 0.93235 0.88986 0.90343 0.96567 0.89813 0.86295 0.85063 0.87773 0.91373 0.91614 0.97057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 9.18 71.98 0.66 -3.86 16 2 C -0.09 -2.64 4.21 30.60 0.13 -2.51 16 3 C -0.06 -1.76 0.38 -52.13 -0.02 -1.78 16 4 C 0.10 2.72 5.27 71.98 0.38 3.10 16 5 O -0.57 -13.29 12.46 -148.98 -1.86 -15.15 16 6 C -0.10 -2.80 4.66 30.67 0.14 -2.65 16 7 C -0.11 -2.84 5.74 30.64 0.18 -2.66 16 8 C 0.06 2.15 5.25 86.33 0.45 2.60 16 9 N -0.47 -19.49 3.88 -701.92 -2.72 -22.21 16 10 C 0.30 15.02 6.41 133.42 0.85 15.87 16 11 C -0.32 -14.73 9.20 22.73 0.21 -14.52 16 12 C -0.04 -1.89 10.15 22.39 0.23 -1.66 16 13 C -0.32 -16.31 9.83 22.87 0.22 -16.09 16 14 C 0.24 13.58 6.55 40.18 0.26 13.85 16 15 C -0.47 -25.60 9.14 23.46 0.21 -25.39 16 16 H 0.08 4.35 7.85 -2.91 -0.02 4.33 16 17 C 0.03 1.49 5.50 85.29 0.47 1.96 16 18 N -0.74 -38.69 11.46 21.84 0.25 -38.44 16 19 Si 0.98 38.15 29.56 68.60 2.03 40.18 16 20 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 21 H -0.27 -9.82 7.11 99.48 0.71 -9.12 16 22 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 23 N -0.53 -29.45 6.16 -186.59 -1.15 -30.60 16 24 C 0.11 4.57 3.13 86.33 0.27 4.84 16 25 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.03 1.07 6.48 -2.39 -0.02 1.06 16 27 H 0.06 1.64 6.54 -2.39 -0.02 1.62 16 28 H 0.07 1.93 7.71 -2.39 -0.02 1.91 16 29 H 0.06 1.99 6.11 -2.39 -0.01 1.98 16 30 H 0.04 1.25 6.70 -2.39 -0.02 1.24 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.39 5.51 9.12 -74.05 -0.68 4.83 16 33 H 0.08 2.04 7.91 -2.39 -0.02 2.02 16 34 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.09 1.93 8.14 -2.38 -0.02 1.92 16 36 H 0.08 2.01 6.68 -2.39 -0.02 2.00 16 37 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.08 2.72 6.67 -2.39 -0.02 2.71 16 39 H 0.12 4.73 7.15 -2.91 -0.02 4.71 16 40 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 41 H 0.10 4.92 8.06 -2.91 -0.02 4.90 16 42 H 0.28 13.08 8.29 -92.71 -0.77 12.31 16 43 H 0.07 3.15 6.06 -2.39 -0.01 3.13 16 44 H 0.01 0.52 8.10 -2.39 -0.02 0.50 16 Total: -1.00 -63.65 337.62 1.53 -62.13 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 0.32 Total: 33.01 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 4.65 Total: -28.91 kcal Atomic # 7 Polarization: -87.63 SS G_CDS: -3.62 Total: -91.25 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -1.86 Total: -15.15 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -63.65 1.53 -62.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320751663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.746 kcal (2) G-P(sol) polarization free energy of solvation -63.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds