Wall clock time and date at job start Tue Mar 31 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47481 * 2 1 4 4 C 1.52994 * 109.47327 * 120.00617 * 2 1 3 5 5 O 1.42905 * 109.47649 * 174.99594 * 4 2 1 6 6 C 1.42897 * 114.00314 * 179.97438 * 5 4 2 7 7 H 1.08996 * 110.64741 * 328.30435 * 6 5 4 8 8 C 1.54596 * 110.72269 * 91.45538 * 6 5 4 9 9 C 1.53990 * 105.14052 * 140.49316 * 8 6 5 10 10 N 1.47899 * 107.05911 * 1.22196 * 9 8 6 11 11 C 1.38816 * 111.00618 * 214.15499 * 10 9 8 12 12 C 1.39806 * 119.58019 * 59.89434 * 11 10 9 13 13 C 1.38601 * 119.48696 * 179.97438 * 12 11 10 14 14 C 1.38393 * 118.68270 * 359.75484 * 13 12 11 15 15 C 1.40551 * 119.14497 * 0.49202 * 14 13 12 16 16 C 1.41318 * 119.77951 * 179.77301 * 15 14 13 17 17 H 1.08002 * 120.00347 * 359.72751 * 16 15 14 18 18 C 1.40028 * 119.99754 * 179.44559 * 16 15 14 19 19 N 1.30744 * 120.00260 * 0.27874 * 18 16 15 20 20 Si 1.86803 * 119.99845 * 180.27307 * 18 16 15 21 21 H 1.48504 * 109.46768 * 60.00346 * 20 18 16 22 22 H 1.48498 * 109.47326 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47374 * 300.00624 * 20 18 16 24 24 N 1.31952 * 119.59256 * 239.87780 * 11 10 9 25 25 C 1.48535 * 105.82275 * 334.67209 * 10 9 8 26 26 H 1.08998 * 109.46699 * 299.99657 * 1 2 3 27 27 H 1.09001 * 109.47104 * 59.99274 * 1 2 3 28 28 H 1.08994 * 109.47225 * 179.97438 * 1 2 3 29 29 H 1.09010 * 109.46999 * 240.00624 * 2 1 3 30 30 H 1.08998 * 109.46874 * 60.00450 * 3 2 1 31 31 H 1.09002 * 109.47362 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47111 * 300.00303 * 3 2 1 33 33 H 1.09002 * 109.47542 * 54.99511 * 4 2 1 34 34 H 1.09000 * 109.47152 * 294.99698 * 4 2 1 35 35 H 1.08999 * 110.30957 * 21.57468 * 8 6 5 36 36 H 1.08996 * 110.30831 * 259.41009 * 8 6 5 37 37 H 1.09004 * 109.91699 * 241.87263 * 9 8 6 38 38 H 1.09002 * 110.08664 * 120.66997 * 9 8 6 39 39 H 1.07995 * 120.25817 * 359.96261 * 12 11 10 40 40 H 1.07994 * 120.65551 * 180.02562 * 13 12 11 41 41 H 1.08000 * 120.42613 * 180.24420 * 14 13 12 42 42 H 0.96996 * 120.00373 * 179.97438 * 19 18 16 43 43 H 1.08998 * 110.67045 * 157.63620 * 25 10 9 44 44 H 1.09002 * 110.66896 * 280.77157 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 8 3.4642 -0.8240 1.1919 6 6 4.0451 -1.4849 2.3178 7 1 3.4557 -1.3030 3.2164 8 6 4.1820 -3.0015 2.0512 9 6 5.5398 -3.3962 2.6611 10 7 6.1164 -2.1746 3.2633 11 6 7.4996 -2.1671 3.1458 12 6 8.0847 -2.2075 1.8767 13 6 9.4659 -2.1994 1.7617 14 6 10.2282 -2.1461 2.9156 15 6 9.5809 -2.1125 4.1627 16 6 10.3463 -2.0628 5.3496 17 1 11.4250 -2.0552 5.2967 18 6 9.7060 -2.0175 6.5941 19 7 8.4002 -2.0267 6.6582 20 14 10.7177 -1.9441 8.1628 21 1 11.5633 -0.7235 8.1497 22 1 9.8089 -1.9048 9.3366 23 1 11.5851 -3.1463 8.2491 24 7 8.2456 -2.1217 4.2333 25 6 5.5134 -1.0356 2.5248 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6768 1.9562 0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6054 -1.7199 1.2950 34 1 1.7517 -0.1585 2.1369 35 1 4.1769 -3.1992 0.9793 36 1 3.3747 -3.5461 2.5409 37 1 6.2014 -3.7736 1.8814 38 1 5.3985 -4.1573 3.4284 39 1 7.4653 -2.2449 0.9929 40 1 9.9378 -2.2297 0.7908 41 1 11.3066 -2.1345 2.8585 42 1 7.9567 -1.9957 7.5203 43 1 5.5563 -0.1243 3.1213 44 1 6.0108 -0.8925 1.5655 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116636025.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:49 Heat of formation + Delta-G solvation = -7.353727 kcal Electronic energy + Delta-G solvation = -23028.349492 eV Core-core repulsion = 19752.593312 eV Total energy + Delta-G solvation = -3275.756180 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.58752 -38.21615 -36.80746 -34.89345 -33.49186 -31.23984 -30.36726 -28.52230 -28.07872 -27.30992 -25.82980 -25.32635 -22.36898 -21.42802 -20.75208 -20.29838 -19.85028 -17.50579 -17.00181 -16.03455 -15.82283 -15.20221 -14.81025 -14.58958 -14.34081 -13.94195 -13.89442 -13.57319 -13.27542 -12.97576 -12.69377 -12.59020 -12.36699 -12.10573 -11.76538 -11.68492 -11.48459 -11.27471 -11.15012 -11.06067 -11.03949 -10.91192 -10.72393 -10.71461 -10.52108 -10.30565 -10.00863 -9.43273 -9.32211 -8.27459 -8.17851 -7.51950 -7.26676 -6.32650 -4.51698 2.64071 2.99889 3.09912 3.11822 3.20166 3.58221 3.96002 4.55197 4.68670 4.69286 4.73562 4.90007 5.01091 5.06298 5.24252 5.33493 5.34493 5.42375 5.52490 5.57802 5.68747 5.76868 5.81379 5.87667 5.89310 6.01282 6.04109 6.09041 6.14109 6.21300 6.21898 6.34146 6.36992 6.45086 6.72542 6.78906 6.89361 7.21826 7.24149 7.49160 7.53286 7.66091 7.75425 8.19728 8.28527 8.70836 8.94020 10.13727 10.33564 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.024212 B = 0.003326 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.195885 B = 8417.614935 C = 8872.191097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.145 4.145 4 C 0.066 3.934 5 O -0.377 6.377 6 C 0.087 3.913 7 H 0.075 0.925 8 C -0.150 4.150 9 C 0.050 3.950 10 N -0.463 5.463 11 C 0.313 3.687 12 C -0.345 4.345 13 C -0.049 4.049 14 C -0.285 4.285 15 C 0.261 3.739 16 C -0.428 4.428 17 H 0.085 0.915 18 C 0.066 3.934 19 N -0.702 5.702 20 Si 0.907 3.093 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.265 1.265 24 N -0.456 5.456 25 C 0.056 3.944 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.274 0.726 43 H 0.084 0.916 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.934 1.923 -8.012 15.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.202 4.202 4 C -0.011 4.011 5 O -0.295 6.295 6 C 0.028 3.972 7 H 0.093 0.907 8 C -0.188 4.188 9 C -0.078 4.078 10 N -0.186 5.186 11 C 0.074 3.926 12 C -0.371 4.371 13 C -0.073 4.073 14 C -0.307 4.307 15 C 0.136 3.864 16 C -0.459 4.459 17 H 0.103 0.897 18 C -0.160 4.160 19 N -0.322 5.322 20 Si 0.731 3.269 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.190 1.190 24 N -0.169 5.169 25 C -0.072 4.072 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.117 0.883 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.478 2.054 -6.577 15.137 hybrid contribution 0.910 -0.228 -0.833 1.254 sum -12.568 1.826 -7.410 14.704 Atomic orbital electron populations 1.21785 0.94538 1.01868 1.02111 1.21097 0.95254 0.97027 0.98039 1.21787 1.02212 0.95006 1.01206 1.22578 0.81727 0.98917 0.97832 1.87882 1.19508 1.78728 1.43386 1.22987 0.94748 0.91176 0.88247 0.90696 1.22906 0.97949 0.96576 1.01415 1.22779 0.93842 0.93368 0.97795 1.61374 1.04227 1.01363 1.51600 1.19680 0.88453 0.95530 0.88943 1.21535 0.95451 1.22961 0.97174 1.20701 0.93469 0.96440 0.96736 1.21728 0.98589 1.16751 0.93680 1.18464 0.87702 0.88522 0.91734 1.19582 0.94154 1.42656 0.89477 0.89727 1.26105 0.95092 0.93944 1.00881 1.70161 1.08596 1.27183 1.26280 0.86407 0.80318 0.79851 0.80360 1.18958 1.20194 1.18970 1.68395 1.05117 1.16066 1.27299 1.23106 0.91485 0.94846 0.97713 0.92521 0.92160 0.92594 0.90487 0.92914 0.91630 0.93001 0.93562 0.93372 0.90707 0.91210 0.93032 0.90463 0.89061 0.88778 0.88292 0.91444 0.89780 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.19 37.16 0.34 -0.73 16 2 C -0.10 -0.91 3.16 -90.62 -0.29 -1.19 16 3 C -0.14 -1.39 9.09 37.16 0.34 -1.06 16 4 C 0.07 0.73 5.19 37.15 0.19 0.92 16 5 O -0.38 -5.32 9.63 -35.23 -0.34 -5.66 16 6 C 0.09 1.31 3.51 -24.87 -0.09 1.22 16 7 H 0.08 1.08 7.88 -51.93 -0.41 0.67 16 8 C -0.15 -2.16 6.69 -25.38 -0.17 -2.33 16 9 C 0.05 0.90 6.49 -2.76 -0.02 0.89 16 10 N -0.46 -10.02 5.36 -169.20 -0.91 -10.93 16 11 C 0.31 7.83 5.84 -155.33 -0.91 6.92 16 12 C -0.34 -8.04 7.90 -38.86 -0.31 -8.35 16 13 C -0.05 -1.13 10.15 -39.39 -0.40 -1.53 16 14 C -0.28 -7.15 9.83 -38.65 -0.38 -7.53 16 15 C 0.26 7.29 6.55 -85.00 -0.56 6.73 16 16 C -0.43 -11.56 9.14 -37.74 -0.34 -11.91 16 17 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 18 C 0.07 1.70 5.50 -17.34 -0.10 1.61 16 19 N -0.70 -19.02 11.46 55.55 0.64 -18.39 16 20 Si 0.91 18.70 29.56 -169.99 -5.02 13.68 16 21 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 24 N -0.46 -12.90 7.89 -10.33 -0.08 -12.98 16 25 C 0.06 1.05 6.13 -1.89 -0.01 1.04 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.74 7.82 -51.93 -0.41 0.33 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.51 8.11 -51.93 -0.42 0.09 16 35 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.96 6.65 -51.93 -0.35 0.62 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.09 1.95 7.03 -52.49 -0.37 1.58 16 40 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 41 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 42 H 0.27 6.78 8.29 -40.82 -0.34 6.44 16 43 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 44 H 0.06 1.13 6.61 -51.93 -0.34 0.79 16 LS Contribution 355.39 15.07 5.36 5.36 Total: -1.00 -29.88 355.39 -10.38 -40.26 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -7.33 Total: 3.97 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -2.69 Total: -15.30 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: -0.35 Total: -42.30 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.34 Total: -5.66 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.68 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.88 -10.38 -40.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636025.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.909 kcal (2) G-P(sol) polarization free energy of solvation -29.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds