Wall clock time and date at job start Tue Mar 31 2020 06:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99502 * 2 1 3 5 5 O 1.42903 * 109.46726 * 174.99924 * 4 2 1 6 6 C 1.42899 * 113.99629 * 180.02562 * 5 4 2 7 7 H 1.09000 * 110.64958 * 29.29988 * 6 5 4 8 8 C 1.54601 * 110.72734 * 266.14839 * 6 5 4 9 9 C 1.53989 * 105.14261 * 219.68768 * 8 6 5 10 10 N 1.47899 * 107.05826 * 358.77277 * 9 8 6 11 11 C 1.38823 * 111.00060 * 145.84338 * 10 9 8 12 12 C 1.39794 * 119.58768 * 300.12485 * 11 10 9 13 13 C 1.38589 * 119.49102 * 179.97438 * 12 11 10 14 14 C 1.38392 * 118.68574 * 0.02562 * 13 12 11 15 15 C 1.40551 * 119.14549 * 359.97438 * 14 13 12 16 16 C 1.41317 * 119.78524 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99460 * 0.02562 * 16 15 14 18 18 C 1.40027 * 120.00217 * 180.02562 * 16 15 14 19 19 N 1.30744 * 119.99695 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 119.99964 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47139 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47488 * 120.00242 * 20 18 16 23 23 H 1.48504 * 109.47232 * 240.00042 * 20 18 16 24 24 N 1.31960 * 119.58297 * 119.85347 * 11 10 9 25 25 C 1.48735 * 105.94557 * 25.20269 * 10 9 8 26 26 H 1.09000 * 109.47312 * 300.00535 * 1 2 3 27 27 H 1.09004 * 109.46964 * 60.00333 * 1 2 3 28 28 H 1.08994 * 109.47359 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47355 * 239.99492 * 2 1 3 30 30 H 1.09000 * 109.47443 * 59.99545 * 3 2 1 31 31 H 1.09001 * 109.47099 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.46908 * 299.99702 * 3 2 1 33 33 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 34 34 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 35 35 H 1.09008 * 110.30161 * 338.60137 * 8 6 5 36 36 H 1.08997 * 110.30736 * 100.76572 * 8 6 5 37 37 H 1.09001 * 109.91987 * 118.12645 * 9 8 6 38 38 H 1.08998 * 109.92009 * 239.42023 * 9 8 6 39 39 H 1.07999 * 120.25193 * 0.02562 * 12 11 10 40 40 H 1.08001 * 120.65709 * 180.02562 * 13 12 11 41 41 H 1.07998 * 120.42568 * 180.02562 * 14 13 12 42 42 H 0.97000 * 119.99802 * 179.97438 * 19 18 16 43 43 H 1.09001 * 110.83708 * 202.57813 * 25 10 9 44 44 H 1.08999 * 110.58268 * 79.38111 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 3.4641 -0.8237 1.1921 6 6 4.0448 -1.4855 2.3176 7 1 3.3506 -2.2148 2.7351 8 6 4.4741 -0.4611 3.3931 9 6 5.8192 -0.9828 3.9313 10 7 6.1111 -2.2458 3.2191 11 6 7.4756 -2.3970 3.0133 12 6 8.1718 -1.4395 2.2698 13 6 9.5341 -1.5922 2.0660 14 6 10.1673 -2.6967 2.6087 15 6 9.4124 -3.6245 3.3467 16 6 10.0453 -4.7569 3.9073 17 1 11.1058 -4.9068 3.7683 18 6 9.2975 -5.6845 4.6430 19 7 8.0138 -5.5026 4.8116 20 14 10.1343 -7.1808 5.3846 21 1 11.5814 -7.1542 5.0521 22 1 9.9644 -7.1628 6.8597 23 1 9.5223 -8.4154 4.8309 24 7 8.1002 -3.4400 3.5265 25 6 5.3818 -2.1633 1.9255 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8898 30 1 1.6767 1.9564 0.8899 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.7515 -0.1582 2.1370 34 1 1.6053 -1.7197 1.2953 35 1 4.6022 0.5250 2.9464 36 1 3.7358 -0.4216 4.1939 37 1 6.6059 -0.2547 3.7336 38 1 5.7433 -1.1697 5.0025 39 1 7.6522 -0.5870 1.8581 40 1 10.0905 -0.8637 1.4950 41 1 11.2279 -2.8433 2.4676 42 1 7.4958 -6.1453 5.3209 43 1 5.2035 -3.1579 1.5168 44 1 5.9315 -1.5467 1.2143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116636026.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:52 Heat of formation + Delta-G solvation = -7.410041 kcal Electronic energy + Delta-G solvation = -23035.241237 eV Core-core repulsion = 19759.482615 eV Total energy + Delta-G solvation = -3275.758622 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.57322 -38.21617 -36.79974 -34.89337 -33.49292 -31.24232 -30.36749 -28.51329 -28.07777 -27.32522 -25.83595 -25.32445 -22.37714 -21.42717 -20.69821 -20.35459 -19.82342 -17.50378 -17.08391 -16.21352 -15.34722 -15.23511 -14.92781 -14.63253 -14.32923 -14.18185 -13.75785 -13.55814 -13.26683 -12.90136 -12.70664 -12.58360 -12.37778 -12.14734 -11.78201 -11.68913 -11.53566 -11.28517 -11.14327 -11.03266 -11.00804 -10.92858 -10.73783 -10.70036 -10.52746 -10.30772 -9.97020 -9.43183 -9.34031 -8.27242 -8.17668 -7.51820 -7.26622 -6.32879 -4.51614 2.63196 2.98874 3.10656 3.14805 3.18835 3.58388 3.96013 4.55407 4.65800 4.70546 4.73477 4.91403 5.02016 5.03592 5.24347 5.33329 5.34499 5.41907 5.51652 5.57664 5.66991 5.76826 5.80523 5.87388 5.88934 6.01398 6.04269 6.09311 6.14301 6.19037 6.20795 6.34559 6.37087 6.45016 6.72597 6.78990 6.89579 7.21742 7.24327 7.49130 7.53452 7.66104 7.75446 8.20639 8.28699 8.70960 8.94211 10.13674 10.33388 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.025973 B = 0.003316 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.788809 B = 8441.245314 C = 9038.604365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.144 4.144 4 C 0.066 3.934 5 O -0.377 6.377 6 C 0.087 3.913 7 H 0.075 0.925 8 C -0.149 4.149 9 C 0.050 3.950 10 N -0.464 5.464 11 C 0.313 3.687 12 C -0.344 4.344 13 C -0.049 4.049 14 C -0.284 4.284 15 C 0.261 3.739 16 C -0.428 4.428 17 H 0.085 0.915 18 C 0.066 3.934 19 N -0.702 5.702 20 Si 0.906 3.094 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.273 1.273 24 N -0.456 5.456 25 C 0.056 3.944 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.273 0.727 43 H 0.084 0.916 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.229 8.267 -4.661 15.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.201 4.201 4 C -0.011 4.011 5 O -0.295 6.295 6 C 0.028 3.972 7 H 0.093 0.907 8 C -0.187 4.187 9 C -0.077 4.077 10 N -0.187 5.187 11 C 0.074 3.926 12 C -0.371 4.371 13 C -0.074 4.074 14 C -0.307 4.307 15 C 0.135 3.865 16 C -0.458 4.458 17 H 0.104 0.896 18 C -0.160 4.160 19 N -0.322 5.322 20 Si 0.730 3.270 21 H -0.184 1.184 22 H -0.198 1.198 23 H -0.198 1.198 24 N -0.169 5.169 25 C -0.072 4.072 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.117 0.883 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.904 7.136 -3.891 15.250 hybrid contribution 0.982 0.617 -0.385 1.222 sum -11.922 7.753 -4.276 14.850 Atomic orbital electron populations 1.21785 0.94524 1.01936 1.02058 1.21102 0.95273 0.96960 0.98134 1.21781 1.02105 0.95077 1.01147 1.22586 0.81700 0.99053 0.97727 1.87887 1.19515 1.78720 1.43387 1.22998 0.95047 0.93139 0.85991 0.90680 1.22893 0.97666 0.99598 0.98577 1.22779 0.95433 0.90141 0.99386 1.61373 1.07552 1.33433 1.16299 1.19682 0.88169 0.91459 0.93288 1.21532 0.96040 1.04444 1.15062 1.20700 0.93903 0.96097 0.96667 1.21729 0.99423 0.99544 1.10024 1.18483 0.87146 0.91780 0.89059 1.19650 0.95950 1.03444 1.26793 0.89645 1.26110 0.94816 0.99332 0.95788 1.70186 1.06102 1.31023 1.24879 0.86296 0.80589 0.80945 0.79164 1.18437 1.19832 1.19826 1.68406 1.09094 1.18172 1.21204 1.23155 0.91983 1.00542 0.91521 0.92581 0.92155 0.92524 0.90376 0.93009 0.91730 0.92997 0.93508 0.93415 0.90698 0.91214 0.93014 0.90472 0.89065 0.88777 0.88289 0.91569 0.89765 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.19 37.16 0.34 -0.74 16 2 C -0.10 -0.91 3.16 -90.62 -0.29 -1.20 16 3 C -0.14 -1.34 9.09 37.16 0.34 -1.00 16 4 C 0.07 0.73 5.17 37.16 0.19 0.92 16 5 O -0.38 -5.32 9.62 -35.23 -0.34 -5.66 16 6 C 0.09 1.31 3.52 -24.87 -0.09 1.22 16 7 H 0.08 1.08 7.85 -51.93 -0.41 0.67 16 8 C -0.15 -2.15 6.70 -25.37 -0.17 -2.32 16 9 C 0.05 0.91 6.50 -2.76 -0.02 0.89 16 10 N -0.46 -10.04 5.35 -169.04 -0.90 -10.94 16 11 C 0.31 7.83 5.84 -155.32 -0.91 6.93 16 12 C -0.34 -8.03 7.90 -38.87 -0.31 -8.33 16 13 C -0.05 -1.14 10.15 -39.40 -0.40 -1.54 16 14 C -0.28 -7.14 9.83 -38.65 -0.38 -7.52 16 15 C 0.26 7.28 6.55 -85.00 -0.56 6.72 16 16 C -0.43 -11.55 9.14 -37.74 -0.34 -11.90 16 17 H 0.09 2.15 7.85 -52.49 -0.41 1.74 16 18 C 0.07 1.69 5.50 -17.34 -0.10 1.60 16 19 N -0.70 -19.02 11.46 55.55 0.64 -18.38 16 20 Si 0.91 18.70 29.56 -169.99 -5.02 13.68 16 21 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 24 N -0.46 -12.91 7.89 -10.33 -0.08 -12.99 16 25 C 0.06 1.04 6.15 -1.78 -0.01 1.03 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.70 7.82 -51.93 -0.41 0.30 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.50 8.11 -51.93 -0.42 0.08 16 35 H 0.07 1.03 8.07 -51.92 -0.42 0.61 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.97 6.65 -51.93 -0.35 0.62 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.09 1.94 7.04 -52.49 -0.37 1.58 16 40 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 41 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 42 H 0.27 6.71 8.29 -40.82 -0.34 6.37 16 43 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 44 H 0.06 1.14 6.62 -51.93 -0.34 0.79 16 LS Contribution 355.41 15.07 5.36 5.36 Total: -1.00 -29.94 355.41 -10.38 -40.32 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -7.33 Total: 3.85 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -2.69 Total: -15.24 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: -0.35 Total: -42.31 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.34 Total: -5.66 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.68 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.94 -10.38 -40.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636026.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.910 kcal (2) G-P(sol) polarization free energy of solvation -29.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds