Wall clock time and date at job start Tue Mar 31 2020 08:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53006 * 109.46685 * 2 1 4 4 C 1.52999 * 109.46874 * 119.99689 * 2 1 3 5 5 N 1.46504 * 109.46796 * 175.00474 * 4 2 1 6 6 C 1.34778 * 119.99966 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99694 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99963 * 180.02562 * 6 5 4 9 9 H 1.09004 * 109.46934 * 299.99172 * 8 6 5 10 10 C 1.52991 * 109.47396 * 59.99438 * 8 6 5 11 11 N 1.46503 * 109.47006 * 180.02562 * 8 6 5 12 12 C 1.38851 * 120.00275 * 154.99906 * 11 8 6 13 13 C 1.39569 * 119.84243 * 179.97438 * 12 11 8 14 14 C 1.36336 * 120.15944 * 179.97438 * 13 12 11 15 15 C 1.40892 * 119.83962 * 0.02562 * 14 13 12 16 16 C 1.41137 * 120.15489 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99503 * 154.51722 * 16 15 14 18 18 C 1.39860 * 120.00204 * 334.51569 * 16 15 14 19 19 N 1.30910 * 119.99878 * 343.07346 * 18 16 15 20 20 Si 1.86800 * 120.00124 * 163.07668 * 18 16 15 21 21 H 1.48499 * 109.47155 * 59.99799 * 20 18 16 22 22 H 1.48501 * 109.47012 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46957 * 299.99887 * 20 18 16 24 24 C 1.40883 * 119.68392 * 0.26939 * 15 14 13 25 25 C 1.36339 * 119.83993 * 359.44366 * 24 15 14 26 26 H 1.09000 * 109.47176 * 300.00309 * 1 2 3 27 27 H 1.08995 * 109.46961 * 60.00611 * 1 2 3 28 28 H 1.09002 * 109.47031 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47176 * 239.99691 * 2 1 3 30 30 H 1.08995 * 109.46922 * 299.99413 * 3 2 1 31 31 H 1.08997 * 109.47146 * 59.99639 * 3 2 1 32 32 H 1.09004 * 109.46844 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47229 * 55.00450 * 4 2 1 34 34 H 1.09004 * 109.47095 * 295.00180 * 4 2 1 35 35 H 0.96997 * 119.99966 * 359.97438 * 5 4 2 36 36 H 1.08994 * 109.47451 * 299.99638 * 10 8 6 37 37 H 1.08991 * 109.47462 * 60.00232 * 10 8 6 38 38 H 1.09008 * 109.46993 * 179.97438 * 10 8 6 39 39 H 0.97003 * 119.99501 * 334.98407 * 11 8 6 40 40 H 1.08000 * 119.92015 * 0.02562 * 13 12 11 41 41 H 1.08003 * 120.08167 * 179.97438 * 14 13 12 42 42 H 0.97001 * 119.99895 * 180.02562 * 19 18 16 43 43 H 1.08004 * 120.07687 * 179.69784 * 24 15 14 44 44 H 1.07998 * 119.91944 * 180.27668 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8262 1.1907 6 6 4.1731 -1.4290 2.1908 7 8 3.5699 -1.8840 3.1396 8 6 5.6750 -1.5365 2.1308 9 1 5.9638 -2.0989 1.2428 10 6 6.2846 -0.1347 2.0673 11 7 6.1632 -2.2282 3.3264 12 6 7.3767 -2.9022 3.2917 13 6 7.8389 -3.5596 4.4328 14 6 9.0292 -4.2238 4.4058 15 6 9.7935 -4.2450 3.2224 16 6 11.0264 -4.9310 3.1868 17 1 11.4094 -5.3048 2.2488 18 6 11.7522 -5.1266 4.3663 19 7 11.4802 -4.4112 5.4284 20 14 13.1095 -6.4085 4.4261 21 1 14.1475 -6.0779 3.4169 22 1 13.7211 -6.4191 5.7793 23 1 12.5394 -7.7473 4.1295 24 6 9.3236 -3.5739 2.0762 25 6 8.1286 -2.9187 2.1160 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4426 -0.0005 33 1 1.6055 -1.7197 1.2952 34 1 1.7516 -0.1582 2.1370 35 1 3.9824 -0.4626 0.4317 36 1 5.9214 0.3795 1.1775 37 1 5.9959 0.4277 2.9551 38 1 7.3710 -0.2125 2.0243 39 1 5.6388 -2.2152 4.1423 40 1 7.2518 -3.5429 5.3391 41 1 9.3859 -4.7318 5.2897 42 1 11.9838 -4.5466 6.2463 43 1 9.9066 -3.5819 1.1671 44 1 7.7650 -2.4076 1.2368 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048777628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:20 Heat of formation + Delta-G solvation = -30.862267 kcal Electronic energy + Delta-G solvation = -22412.866797 eV Core-core repulsion = 19136.091210 eV Total energy + Delta-G solvation = -3276.775587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 4.32 seconds Orbital eigenvalues (eV) -40.02866 -37.94669 -36.92346 -35.19234 -33.59444 -33.02416 -30.68688 -29.27073 -28.08355 -27.59512 -26.57419 -24.70936 -23.24763 -21.28216 -20.85520 -20.37729 -19.55410 -17.53645 -17.00104 -16.57439 -15.86940 -15.55688 -15.18125 -14.76579 -14.69642 -14.07381 -13.83653 -13.50609 -13.44160 -13.05376 -12.77214 -12.56328 -12.49166 -12.37369 -12.21890 -11.96387 -11.73106 -11.56043 -11.49483 -11.32592 -11.15243 -11.11095 -10.99807 -10.83559 -10.45756 -9.73421 -9.65990 -9.27858 -9.24777 -9.19348 -8.56504 -7.47423 -6.61919 -6.37322 -4.02370 2.64199 2.93050 3.02923 3.11679 3.15975 3.19123 3.37796 4.07225 4.30544 4.35836 4.47438 4.61257 4.74868 4.78807 5.13277 5.21545 5.24819 5.28003 5.34748 5.41762 5.47986 5.56846 5.66638 5.69991 5.84228 5.84841 5.89935 5.92861 6.23961 6.29142 6.33040 6.34726 6.86274 7.07645 7.20498 7.29453 7.37476 7.60791 7.68666 7.81499 8.16670 8.17066 8.35706 8.49411 8.70855 8.82456 9.07902 9.16814 10.40211 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.047412 B = 0.002574 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.423345 B =10877.048713 C =11034.867453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.150 4.150 4 C 0.123 3.877 5 N -0.732 5.732 6 C 0.511 3.489 7 O -0.535 6.535 8 C 0.145 3.855 9 H 0.097 0.903 10 C -0.163 4.163 11 N -0.742 5.742 12 C 0.095 3.905 13 C -0.160 4.160 14 C -0.120 4.120 15 C 0.075 3.925 16 C -0.467 4.467 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.809 5.809 20 Si 0.904 3.096 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.266 1.266 24 C -0.188 4.188 25 C -0.163 4.163 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.400 0.600 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.395 0.605 40 H 0.088 0.912 41 H 0.119 0.881 42 H 0.277 0.723 43 H 0.091 0.909 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.805 9.956 -9.686 21.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.207 4.207 4 C -0.001 4.001 5 N -0.385 5.385 6 C 0.297 3.703 7 O -0.411 6.411 8 C 0.034 3.966 9 H 0.114 0.886 10 C -0.223 4.223 11 N -0.379 5.379 12 C -0.001 4.001 13 C -0.182 4.182 14 C -0.140 4.140 15 C 0.072 3.928 16 C -0.498 4.498 17 H 0.090 0.910 18 C -0.141 4.141 19 N -0.436 5.436 20 Si 0.729 3.271 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.191 1.191 24 C -0.208 4.208 25 C -0.185 4.185 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.235 0.765 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.230 0.770 40 H 0.106 0.894 41 H 0.137 0.863 42 H 0.087 0.913 43 H 0.109 0.891 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.146 9.700 -8.904 20.834 hybrid contribution 0.694 -0.296 0.002 0.754 sum -15.452 9.404 -8.902 20.161 Atomic orbital electron populations 1.21763 0.94050 1.02242 1.02232 1.21368 0.96739 0.96752 0.97927 1.21878 1.01190 0.95489 1.02132 1.21413 0.80005 1.00665 0.97991 1.46013 1.07600 1.60761 1.24164 1.21104 0.90506 0.76693 0.81994 1.90676 1.70164 1.46930 1.33282 1.20399 0.88430 0.94897 0.92849 0.88572 1.22277 1.03130 0.95491 1.01358 1.43660 1.22102 1.60509 1.11614 1.17318 0.87398 1.00440 0.94965 1.20051 0.98618 1.03965 0.95528 1.20937 0.92590 1.00877 0.99609 1.17499 0.92845 0.91395 0.91066 1.19322 1.03705 1.32644 0.94172 0.91004 1.25798 0.97957 0.95115 0.95245 1.69842 1.37734 1.33343 1.02689 0.86453 0.80859 0.81938 0.77855 1.19304 1.20610 1.19107 1.20552 0.97380 1.03795 0.99120 1.19861 0.97230 1.06251 0.95158 0.92312 0.92162 0.92306 0.90460 0.92380 0.92369 0.92481 0.91552 0.91533 0.76506 0.92568 0.92286 0.90479 0.76996 0.89368 0.86281 0.91266 0.89096 0.89447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.19 37.16 0.34 -0.46 16 2 C -0.11 -0.68 2.96 -90.61 -0.27 -0.95 16 3 C -0.15 -0.86 9.07 37.16 0.34 -0.52 16 4 C 0.12 1.11 5.06 -4.04 -0.02 1.09 16 5 N -0.73 -7.31 5.18 -60.29 -0.31 -7.62 16 6 C 0.51 7.23 7.22 -10.99 -0.08 7.15 16 7 O -0.53 -9.61 15.84 5.55 0.09 -9.52 16 8 C 0.15 2.13 2.67 -69.09 -0.18 1.95 16 9 H 0.10 1.38 6.45 -51.93 -0.33 1.05 16 10 C -0.16 -2.04 9.30 37.15 0.35 -1.70 16 11 N -0.74 -13.84 5.09 -53.16 -0.27 -14.11 16 12 C 0.10 2.11 6.65 -83.69 -0.56 1.55 16 13 C -0.16 -3.84 9.82 -39.77 -0.39 -4.23 16 14 C -0.12 -3.19 8.63 -39.26 -0.34 -3.53 16 15 C 0.07 2.03 5.57 -106.79 -0.59 1.44 16 16 C -0.47 -12.73 9.03 -37.88 -0.34 -13.08 16 17 H 0.07 1.88 7.90 -52.49 -0.41 1.47 16 18 C 0.07 1.92 5.15 -17.34 -0.09 1.83 16 19 N -0.81 -21.66 10.96 55.54 0.61 -21.05 16 20 Si 0.90 19.39 29.59 -169.99 -5.03 14.36 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 C -0.19 -4.63 9.74 -39.27 -0.38 -5.01 16 25 C -0.16 -3.59 8.74 -39.77 -0.35 -3.94 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.32 7.18 -51.93 -0.37 -0.05 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.40 2.96 7.07 -40.82 -0.29 2.67 16 36 H 0.06 0.51 7.57 -51.93 -0.39 0.11 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.10 7.66 -51.92 -0.40 0.70 16 39 H 0.39 7.49 7.79 -40.82 -0.32 7.17 16 40 H 0.09 1.96 8.06 -52.49 -0.42 1.54 16 41 H 0.12 3.28 6.18 -52.48 -0.32 2.96 16 42 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 43 H 0.09 2.10 8.06 -52.48 -0.42 1.68 16 44 H 0.09 1.65 6.04 -52.49 -0.32 1.33 16 LS Contribution 358.31 15.07 5.40 5.40 Total: -1.00 -30.49 358.31 -9.03 -39.52 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -6.95 Total: 11.41 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -2.57 Total: -18.39 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.03 Total: -42.78 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.49 -9.03 -39.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048777628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.662 kcal (2) G-P(sol) polarization free energy of solvation -30.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.32 seconds