Wall clock time and date at job start Tue Mar 31 2020 08:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53006 * 109.46685 * 2 1 4 4 C 1.52999 * 109.46874 * 119.99689 * 2 1 3 5 5 N 1.46504 * 109.46796 * 175.00474 * 4 2 1 6 6 C 1.34778 * 119.99966 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99694 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99963 * 180.02562 * 6 5 4 9 9 H 1.09004 * 109.46934 * 299.99172 * 8 6 5 10 10 C 1.52991 * 109.47396 * 59.99438 * 8 6 5 11 11 N 1.46503 * 109.47006 * 180.02562 * 8 6 5 12 12 C 1.38851 * 120.00275 * 154.99906 * 11 8 6 13 13 C 1.39569 * 119.84243 * 179.97438 * 12 11 8 14 14 C 1.36336 * 120.15944 * 179.97438 * 13 12 11 15 15 C 1.40892 * 119.83962 * 0.02562 * 14 13 12 16 16 C 1.41137 * 120.15489 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99503 * 154.51722 * 16 15 14 18 18 C 1.39860 * 120.00204 * 334.51569 * 16 15 14 19 19 N 1.30910 * 119.99878 * 343.07346 * 18 16 15 20 20 Si 1.86800 * 120.00124 * 163.07668 * 18 16 15 21 21 H 1.48499 * 109.47155 * 59.99799 * 20 18 16 22 22 H 1.48501 * 109.47012 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46957 * 299.99887 * 20 18 16 24 24 C 1.40883 * 119.68392 * 0.26939 * 15 14 13 25 25 C 1.36339 * 119.83993 * 359.44366 * 24 15 14 26 26 H 1.09000 * 109.47176 * 300.00309 * 1 2 3 27 27 H 1.08995 * 109.46961 * 60.00611 * 1 2 3 28 28 H 1.09002 * 109.47031 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47176 * 239.99691 * 2 1 3 30 30 H 1.08995 * 109.46922 * 299.99413 * 3 2 1 31 31 H 1.08997 * 109.47146 * 59.99639 * 3 2 1 32 32 H 1.09004 * 109.46844 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47229 * 55.00450 * 4 2 1 34 34 H 1.09004 * 109.47095 * 295.00180 * 4 2 1 35 35 H 0.96997 * 119.99966 * 359.97438 * 5 4 2 36 36 H 1.08994 * 109.47451 * 299.99638 * 10 8 6 37 37 H 1.08991 * 109.47462 * 60.00232 * 10 8 6 38 38 H 1.09008 * 109.46993 * 179.97438 * 10 8 6 39 39 H 0.97003 * 119.99501 * 334.98407 * 11 8 6 40 40 H 1.08000 * 119.92015 * 0.02562 * 13 12 11 41 41 H 1.08003 * 120.08167 * 179.97438 * 14 13 12 42 42 H 0.97001 * 119.99895 * 180.02562 * 19 18 16 43 43 H 1.08004 * 120.07687 * 179.69784 * 24 15 14 44 44 H 1.07998 * 119.91944 * 180.27668 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8262 1.1907 6 6 4.1731 -1.4290 2.1908 7 8 3.5699 -1.8840 3.1396 8 6 5.6750 -1.5365 2.1308 9 1 5.9638 -2.0989 1.2428 10 6 6.2846 -0.1347 2.0673 11 7 6.1632 -2.2282 3.3264 12 6 7.3767 -2.9022 3.2917 13 6 7.8389 -3.5596 4.4328 14 6 9.0292 -4.2238 4.4058 15 6 9.7935 -4.2450 3.2224 16 6 11.0264 -4.9310 3.1868 17 1 11.4094 -5.3048 2.2488 18 6 11.7522 -5.1266 4.3663 19 7 11.4802 -4.4112 5.4284 20 14 13.1095 -6.4085 4.4261 21 1 14.1475 -6.0779 3.4169 22 1 13.7211 -6.4191 5.7793 23 1 12.5394 -7.7473 4.1295 24 6 9.3236 -3.5739 2.0762 25 6 8.1286 -2.9187 2.1160 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4426 -0.0005 33 1 1.6055 -1.7197 1.2952 34 1 1.7516 -0.1582 2.1370 35 1 3.9824 -0.4626 0.4317 36 1 5.9214 0.3795 1.1775 37 1 5.9959 0.4277 2.9551 38 1 7.3710 -0.2125 2.0243 39 1 5.6388 -2.2152 4.1423 40 1 7.2518 -3.5429 5.3391 41 1 9.3859 -4.7318 5.2897 42 1 11.9838 -4.5466 6.2463 43 1 9.9066 -3.5819 1.1671 44 1 7.7650 -2.4076 1.2368 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048777628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:09 Heat of formation + Delta-G solvation = -49.414392 kcal Electronic energy + Delta-G solvation = -22413.671277 eV Core-core repulsion = 19136.091210 eV Total energy + Delta-G solvation = -3277.580067 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 6.97 seconds Orbital eigenvalues (eV) -41.17384 -39.64444 -37.76409 -36.75160 -34.99577 -34.31185 -32.22899 -31.09963 -29.79645 -28.03218 -27.38853 -26.40065 -24.56059 -23.01442 -22.10916 -21.54246 -20.73277 -19.18700 -18.54910 -17.72182 -17.09925 -16.83022 -16.68380 -15.98543 -15.78903 -15.52729 -14.93327 -14.78091 -14.40922 -14.23436 -14.16542 -13.86744 -13.83508 -13.52945 -13.40729 -13.22139 -12.99058 -12.90099 -12.73403 -12.69994 -12.47087 -12.23403 -12.03135 -11.85188 -11.63453 -11.53145 -11.16955 -11.12659 -10.86875 -10.36105 -10.14025 -9.39087 -8.53321 -8.17908 -6.00651 1.11394 1.20266 1.41034 1.51700 1.52657 1.60738 2.02946 2.28391 2.84788 2.90364 3.68422 3.80668 3.85415 3.95470 4.07919 4.13364 4.23329 4.45450 4.53199 4.59059 4.67617 4.71356 4.78487 4.84121 4.86888 5.01227 5.03181 5.05144 5.17094 5.23775 5.28442 5.32278 5.32963 5.41647 5.42343 5.49404 5.74788 5.74984 5.92134 6.20167 6.39756 6.44878 6.68670 6.87926 7.05831 7.09970 7.16805 7.26561 8.50223 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.047412 B = 0.002574 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.423345 B =10877.048713 C =11034.867453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 C -0.150 4.150 4 C 0.122 3.878 5 N -0.710 5.710 6 C 0.513 3.487 7 O -0.579 6.579 8 C 0.140 3.860 9 H 0.108 0.892 10 C -0.156 4.156 11 N -0.742 5.742 12 C 0.116 3.884 13 C -0.177 4.177 14 C -0.141 4.141 15 C 0.035 3.965 16 C -0.504 4.504 17 H 0.070 0.930 18 C 0.029 3.971 19 N -0.844 5.844 20 Si 0.977 3.023 21 H -0.260 1.260 22 H -0.272 1.272 23 H -0.264 1.264 24 C -0.192 4.192 25 C -0.161 4.161 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.416 0.584 36 H 0.098 0.902 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.393 0.607 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.281 0.719 43 H 0.102 0.898 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.706 11.220 -11.931 23.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.207 4.207 4 C -0.002 4.002 5 N -0.363 5.363 6 C 0.299 3.701 7 O -0.458 6.458 8 C 0.030 3.970 9 H 0.125 0.875 10 C -0.215 4.215 11 N -0.377 5.377 12 C 0.017 3.983 13 C -0.199 4.199 14 C -0.161 4.161 15 C 0.032 3.968 16 C -0.535 4.535 17 H 0.089 0.911 18 C -0.182 4.182 19 N -0.472 5.472 20 Si 0.799 3.201 21 H -0.184 1.184 22 H -0.197 1.197 23 H -0.189 1.189 24 C -0.213 4.213 25 C -0.183 4.183 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.254 0.746 36 H 0.117 0.883 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.228 0.772 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.092 0.908 43 H 0.120 0.880 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.086 11.020 -11.214 23.219 hybrid contribution 0.750 -0.551 0.621 1.119 sum -16.336 10.468 -10.593 22.106 Atomic orbital electron populations 1.21776 0.93532 1.02289 1.02746 1.21326 0.97090 0.96877 0.96580 1.21890 1.01439 0.94920 1.02455 1.21514 0.79073 1.00324 0.99275 1.45848 1.08123 1.58942 1.23372 1.20967 0.90202 0.76721 0.82211 1.90670 1.70764 1.49186 1.35214 1.20684 0.89107 0.95912 0.91308 0.87460 1.22213 1.01999 0.94066 1.03239 1.43771 1.20777 1.59985 1.13145 1.17392 0.88133 0.98638 0.94174 1.20207 0.98277 1.04486 0.96969 1.20836 0.93870 1.02283 0.99128 1.17837 0.93603 0.93071 0.92252 1.19567 1.04614 1.34440 0.94884 0.91148 1.26640 1.00350 0.96725 0.94533 1.69920 1.39194 1.34756 1.03328 0.85336 0.77734 0.78810 0.78246 1.18437 1.19699 1.18852 1.20804 0.98368 1.03352 0.98729 1.20156 0.96201 1.05565 0.96378 0.92577 0.90901 0.92545 0.89398 0.91192 0.92995 0.92073 0.92735 0.92522 0.74572 0.88305 0.92854 0.91918 0.77242 0.88414 0.88428 0.90848 0.87987 0.85576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.19 71.98 0.66 -0.63 16 2 C -0.10 -0.97 2.96 -10.79 -0.03 -1.00 16 3 C -0.15 -1.25 9.07 71.98 0.65 -0.60 16 4 C 0.12 1.97 5.06 86.38 0.44 2.41 16 5 N -0.71 -12.18 5.18 -463.05 -2.40 -14.58 16 6 C 0.51 13.46 7.22 87.66 0.63 14.09 16 7 O -0.58 -20.36 15.84 -3.05 -0.05 -20.41 16 8 C 0.14 3.72 2.67 44.24 0.12 3.84 16 9 H 0.11 2.67 6.45 -2.38 -0.02 2.66 16 10 C -0.16 -3.39 9.30 71.98 0.67 -2.72 16 11 N -0.74 -26.65 5.09 -322.10 -1.64 -28.29 16 12 C 0.12 5.01 6.65 38.67 0.26 5.27 16 13 C -0.18 -8.69 9.82 22.15 0.22 -8.47 16 14 C -0.14 -7.80 8.63 22.48 0.19 -7.60 16 15 C 0.04 1.97 5.57 -21.27 -0.12 1.85 16 16 C -0.50 -28.33 9.03 23.37 0.21 -28.12 16 17 H 0.07 3.80 7.90 -2.91 -0.02 3.78 16 18 C 0.03 1.55 5.15 85.22 0.44 1.99 16 19 N -0.84 -46.83 10.96 21.82 0.24 -46.59 16 20 Si 0.98 40.52 29.59 68.60 2.03 42.55 16 21 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 22 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 24 C -0.19 -9.43 9.74 22.47 0.22 -9.21 16 25 C -0.16 -6.83 8.74 22.15 0.19 -6.64 16 26 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.46 7.18 -2.38 -0.02 0.44 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.42 4.46 7.07 -92.71 -0.66 3.80 16 36 H 0.10 1.30 7.57 -2.39 -0.02 1.28 16 37 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.06 1.59 7.66 -2.38 -0.02 1.57 16 39 H 0.39 14.66 7.79 -92.71 -0.72 13.94 16 40 H 0.10 4.46 8.06 -2.91 -0.02 4.44 16 41 H 0.10 5.71 6.18 -2.91 -0.02 5.69 16 42 H 0.28 14.30 8.30 -92.71 -0.77 13.53 16 43 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 44 H 0.13 4.31 6.04 -2.91 -0.02 4.29 16 Total: -1.00 -68.71 358.31 2.56 -66.15 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: -0.38 Total: 36.72 kcal Atomic # 6 Polarization: -40.30 SS G_CDS: 4.75 Total: -35.55 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -3.80 Total: -89.46 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.05 Total: -20.41 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -68.71 2.56 -66.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048777628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.737 kcal (2) G-P(sol) polarization free energy of solvation -68.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.97 seconds