Wall clock time and date at job start Tue Mar 31 2020 07:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47343 * 2 1 4 4 N 1.46895 * 109.47460 * 120.00441 * 2 1 3 5 5 C 1.46899 * 110.99945 * 275.00127 * 4 2 1 6 6 H 1.08999 * 110.28851 * 32.86821 * 5 4 2 7 7 C 1.54256 * 110.32742 * 154.99729 * 5 4 2 8 8 C 1.54382 * 105.06476 * 118.89280 * 7 5 4 9 9 N 1.48565 * 104.58822 * 23.85651 * 8 7 5 10 10 C 1.46903 * 110.99695 * 200.95963 * 9 8 7 11 11 C 1.48555 * 104.22453 * 320.51373 * 9 8 7 12 12 C 1.50708 * 109.47139 * 240.00414 * 2 1 3 13 13 C 1.38300 * 119.93031 * 99.99826 * 12 2 1 14 14 C 1.38103 * 120.06639 * 180.02562 * 13 12 2 15 15 C 1.38875 * 119.93000 * 359.97438 * 14 13 12 16 16 O 1.35753 * 120.06756 * 180.02562 * 15 14 13 17 17 C 1.34830 * 117.00114 * 5.53168 * 16 15 14 18 18 H 1.07999 * 120.00010 * 354.94892 * 17 16 15 19 19 C 1.38649 * 120.00144 * 175.21759 * 17 16 15 20 20 N 1.31557 * 120.00319 * 179.72459 * 19 17 16 21 21 Si 1.86806 * 119.99944 * 359.72846 * 19 17 16 22 22 H 1.48507 * 109.46956 * 89.99614 * 21 19 17 23 23 H 1.48494 * 109.47148 * 209.99623 * 21 19 17 24 24 H 1.48497 * 109.47062 * 329.99665 * 21 19 17 25 25 C 1.38884 * 119.86261 * 0.27199 * 15 14 13 26 26 C 1.38097 * 119.92774 * 359.49687 * 25 15 14 27 27 H 1.09000 * 109.46815 * 59.99785 * 1 2 3 28 28 H 1.09001 * 109.47233 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47086 * 299.99652 * 1 2 3 30 30 H 1.00899 * 110.99943 * 38.94805 * 4 2 1 31 31 H 1.09003 * 110.32294 * 237.79192 * 7 5 4 32 32 H 1.09004 * 110.32369 * 359.89394 * 7 5 4 33 33 H 1.09003 * 110.41301 * 142.62961 * 8 7 5 34 34 H 1.08998 * 110.41207 * 264.95936 * 8 7 5 35 35 H 1.09004 * 109.47008 * 60.12487 * 10 9 8 36 36 H 1.08999 * 109.46987 * 180.12868 * 10 9 8 37 37 H 1.09003 * 109.46989 * 300.12612 * 10 9 8 38 38 H 1.08999 * 110.41454 * 280.71310 * 11 9 8 39 39 H 1.09000 * 110.41257 * 158.26248 * 11 9 8 40 40 H 1.08003 * 119.96829 * 359.97438 * 13 12 2 41 41 H 1.07998 * 120.03274 * 179.97438 * 14 13 12 42 42 H 0.96995 * 120.00180 * 180.02562 * 20 19 17 43 43 H 1.08004 * 120.03250 * 179.72259 * 25 15 14 44 44 H 1.08003 * 119.95897 * 180.22848 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0825 0.2225 2.3468 6 1 1.2850 0.9628 2.2840 7 6 1.9778 -0.5669 3.6680 8 6 3.3005 -0.2820 4.4115 9 7 3.7731 1.0108 3.8524 10 6 5.2159 1.1819 4.0690 11 6 3.4596 0.9181 2.4032 12 6 2.0324 -0.7104 -1.2306 13 6 2.4586 0.0213 -2.3240 14 6 2.9190 -0.6267 -3.4533 15 6 2.9541 -2.0146 -3.4899 16 8 3.4066 -2.6544 -4.5984 17 6 3.9140 -1.8870 -5.5841 18 1 3.8724 -0.8106 -5.5060 19 6 4.4840 -2.4795 -6.7004 20 7 4.9741 -1.7307 -7.6647 21 14 4.5559 -4.3413 -6.8355 22 1 3.3275 -4.8367 -7.5070 23 1 5.7472 -4.7343 -7.6301 24 1 4.6501 -4.9329 -5.4767 25 6 2.5206 -2.7465 -2.3921 26 6 2.0659 -2.0925 -1.2641 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.4496 -1.4979 1.4099 31 1 1.1300 -0.2128 4.2544 32 1 1.8780 -1.6332 3.4650 33 1 3.1222 -0.1903 5.4829 34 1 4.0255 -1.0715 4.2138 35 1 5.7556 0.3724 3.5774 36 1 5.5351 2.1371 3.6521 37 1 5.4276 1.1631 5.1381 38 1 4.2101 0.3174 1.8896 39 1 3.4011 1.9133 1.9626 40 1 2.4306 1.1006 -2.2951 41 1 3.2513 -0.0548 -4.3071 42 1 5.3725 -2.1453 -8.4458 43 1 2.5426 -3.8260 -2.4193 44 1 1.7321 -2.6612 -0.4087 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049084734.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:06 Heat of formation + Delta-G solvation = 7.854497 kcal Electronic energy + Delta-G solvation = -22763.035174 eV Core-core repulsion = 19487.938472 eV Total energy + Delta-G solvation = -3275.096702 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 10.54 seconds Orbital eigenvalues (eV) -39.62142 -39.01723 -37.35170 -35.41088 -32.50212 -32.09618 -30.28071 -29.73353 -28.21011 -27.70776 -25.42230 -25.14989 -22.61022 -22.09826 -21.35052 -20.46798 -19.94008 -17.81550 -17.28600 -16.34490 -16.17190 -15.20489 -14.91637 -14.80446 -14.37922 -14.31202 -13.86221 -13.74848 -13.60935 -13.45447 -13.10446 -12.72442 -12.64582 -12.43816 -12.25648 -12.15403 -11.80826 -11.69761 -11.66877 -11.44431 -11.18222 -11.13308 -11.01805 -10.65594 -10.60073 -10.50898 -10.11315 -9.35737 -8.84464 -8.73282 -8.43260 -8.20229 -7.25503 -6.39585 -4.06127 2.17678 2.26258 3.23745 3.26244 3.41443 3.73817 4.24720 4.25724 4.41695 4.47108 4.54938 4.84670 4.88996 5.05714 5.11331 5.14195 5.20026 5.25975 5.28528 5.36740 5.43570 5.49536 5.60740 5.62670 5.65845 5.71423 5.72606 5.79572 5.82540 5.91018 5.95335 6.12967 6.17990 6.36941 6.53699 6.61128 6.76744 6.80995 6.98256 7.15070 7.31797 7.36359 7.38537 7.64990 7.82769 8.06666 8.96011 9.59385 10.68293 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.024108 B = 0.003083 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.146718 B = 9079.686520 C = 9380.346002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.139 3.861 3 H 0.077 0.923 4 N -0.674 5.674 5 C 0.083 3.917 6 H 0.056 0.944 7 C -0.126 4.126 8 C 0.035 3.965 9 N -0.519 5.519 10 C 0.014 3.986 11 C 0.040 3.960 12 C -0.157 4.157 13 C -0.070 4.070 14 C -0.220 4.220 15 C 0.158 3.842 16 O -0.220 6.220 17 C -0.388 4.388 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.882 5.882 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.260 1.260 25 C -0.194 4.194 26 C -0.056 4.056 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.340 0.660 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.031 0.969 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.132 0.868 42 H 0.279 0.721 43 H 0.114 0.886 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.909 3.417 21.647 22.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.030 3.970 3 H 0.095 0.905 4 N -0.306 5.306 5 C -0.028 4.028 6 H 0.074 0.926 7 C -0.165 4.165 8 C -0.093 4.093 9 N -0.243 5.243 10 C -0.135 4.135 11 C -0.088 4.088 12 C -0.159 4.159 13 C -0.088 4.088 14 C -0.239 4.239 15 C 0.107 3.893 16 O -0.125 6.125 17 C -0.464 4.464 18 H 0.123 0.877 19 C -0.140 4.140 20 N -0.520 5.520 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.184 1.184 25 C -0.213 4.213 26 C -0.075 4.075 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.160 0.840 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.125 0.875 41 H 0.149 0.851 42 H 0.089 0.911 43 H 0.132 0.868 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.366 3.727 21.462 22.435 hybrid contribution -0.299 -1.159 -0.503 1.298 sum -5.664 2.568 20.959 21.862 Atomic orbital electron populations 1.22490 0.97092 1.02150 1.01697 1.20261 0.91913 0.96810 0.88067 0.90498 1.60707 1.57849 1.09056 1.02958 1.22204 0.96689 0.94211 0.89664 0.92648 1.22517 0.97799 1.00426 0.95729 1.23047 0.96076 0.90723 0.99469 1.65376 1.15351 1.31850 1.11763 1.22496 0.87970 1.01385 1.01673 1.23202 0.96840 1.00329 0.88461 1.19134 1.08175 0.93528 0.95035 1.20600 0.97184 0.98355 0.92700 1.21225 1.08228 0.94334 1.00116 1.19124 0.92557 0.90944 0.86715 1.83569 1.69324 1.36402 1.23226 1.20761 1.37515 0.92089 0.96039 0.87685 1.24459 0.95114 1.00173 0.94282 1.69645 1.37934 1.36117 1.08297 0.86182 0.77794 0.83778 0.79158 1.19928 1.20852 1.18363 1.20201 1.08950 0.99198 0.92978 1.20297 0.97886 0.93438 0.95834 0.91780 0.92378 0.93284 0.83979 0.91001 0.90582 0.90435 0.93536 0.95072 0.91251 0.91496 0.92016 0.90584 0.87531 0.85080 0.91104 0.86770 0.87255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 9.12 37.16 0.34 -1.54 16 2 C 0.14 1.71 2.64 -68.86 -0.18 1.53 16 3 H 0.08 0.96 7.69 -51.93 -0.40 0.56 16 4 N -0.67 -7.49 5.49 -99.50 -0.55 -8.03 16 5 C 0.08 0.82 3.15 -66.33 -0.21 0.61 16 6 H 0.06 0.55 7.19 -51.93 -0.37 0.18 16 7 C -0.13 -1.06 6.67 -25.35 -0.17 -1.23 16 8 C 0.04 0.31 6.49 -2.18 -0.01 0.30 16 9 N -0.52 -5.28 5.66 -238.22 -1.35 -6.62 16 10 C 0.01 0.12 9.53 60.07 0.57 0.69 16 11 C 0.04 0.44 6.16 -2.18 -0.01 0.43 16 12 C -0.16 -2.52 4.96 -104.57 -0.52 -3.04 16 13 C -0.07 -1.25 9.66 -39.61 -0.38 -1.63 16 14 C -0.22 -4.75 9.17 -39.39 -0.36 -5.11 16 15 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 16 O -0.22 -5.86 8.59 0.04 0.00 -5.86 16 17 C -0.39 -11.04 9.95 30.88 0.31 -10.73 16 18 H 0.11 3.05 5.44 -52.49 -0.29 2.76 16 19 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 20 N -0.88 -25.67 13.96 55.48 0.77 -24.90 16 21 Si 0.91 21.86 28.62 -169.99 -4.86 16.99 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.26 -6.29 7.11 56.52 0.40 -5.89 16 25 C -0.19 -3.85 9.99 -39.39 -0.39 -4.25 16 26 C -0.06 -0.93 9.31 -39.61 -0.37 -1.30 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 29 H 0.05 0.46 7.49 -51.93 -0.39 0.07 16 30 H 0.34 3.41 7.13 -39.29 -0.28 3.13 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.60 7.52 -51.93 -0.39 0.21 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.43 7.98 -51.93 -0.41 0.01 16 35 H 0.03 0.29 7.97 -51.93 -0.41 -0.13 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.78 7.82 -51.93 -0.41 0.38 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.11 1.65 8.03 -52.48 -0.42 1.23 16 41 H 0.13 2.99 5.64 -52.49 -0.30 2.69 16 42 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.11 2.14 8.06 -52.48 -0.42 1.71 16 44 H 0.11 1.52 7.24 -52.48 -0.38 1.14 16 LS Contribution 353.07 15.07 5.32 5.32 Total: -1.00 -29.48 353.07 -9.38 -38.86 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.97 Total: 4.42 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -1.75 Total: -20.18 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: -1.12 Total: -39.55 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: 0.00 Total: -5.86 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.86 Total: 16.99 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.48 -9.38 -38.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049084734.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.717 kcal (2) G-P(sol) polarization free energy of solvation -29.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.54 seconds