Wall clock time and date at job start Tue Mar 31 2020 07:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47343 * 2 1 4 4 N 1.46895 * 109.47460 * 120.00441 * 2 1 3 5 5 C 1.46899 * 110.99945 * 275.00127 * 4 2 1 6 6 H 1.08999 * 110.28851 * 32.86821 * 5 4 2 7 7 C 1.54256 * 110.32742 * 154.99729 * 5 4 2 8 8 C 1.54382 * 105.06476 * 118.89280 * 7 5 4 9 9 N 1.48565 * 104.58822 * 23.85651 * 8 7 5 10 10 C 1.46903 * 110.99695 * 200.95963 * 9 8 7 11 11 C 1.48555 * 104.22453 * 320.51373 * 9 8 7 12 12 C 1.50708 * 109.47139 * 240.00414 * 2 1 3 13 13 C 1.38300 * 119.93031 * 99.99826 * 12 2 1 14 14 C 1.38103 * 120.06639 * 180.02562 * 13 12 2 15 15 C 1.38875 * 119.93000 * 359.97438 * 14 13 12 16 16 O 1.35753 * 120.06756 * 180.02562 * 15 14 13 17 17 C 1.34830 * 117.00114 * 5.53168 * 16 15 14 18 18 H 1.07999 * 120.00010 * 354.94892 * 17 16 15 19 19 C 1.38649 * 120.00144 * 175.21759 * 17 16 15 20 20 N 1.31557 * 120.00319 * 179.72459 * 19 17 16 21 21 Si 1.86806 * 119.99944 * 359.72846 * 19 17 16 22 22 H 1.48507 * 109.46956 * 89.99614 * 21 19 17 23 23 H 1.48494 * 109.47148 * 209.99623 * 21 19 17 24 24 H 1.48497 * 109.47062 * 329.99665 * 21 19 17 25 25 C 1.38884 * 119.86261 * 0.27199 * 15 14 13 26 26 C 1.38097 * 119.92774 * 359.49687 * 25 15 14 27 27 H 1.09000 * 109.46815 * 59.99785 * 1 2 3 28 28 H 1.09001 * 109.47233 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47086 * 299.99652 * 1 2 3 30 30 H 1.00899 * 110.99943 * 38.94805 * 4 2 1 31 31 H 1.09003 * 110.32294 * 237.79192 * 7 5 4 32 32 H 1.09004 * 110.32369 * 359.89394 * 7 5 4 33 33 H 1.09003 * 110.41301 * 142.62961 * 8 7 5 34 34 H 1.08998 * 110.41207 * 264.95936 * 8 7 5 35 35 H 1.09004 * 109.47008 * 60.12487 * 10 9 8 36 36 H 1.08999 * 109.46987 * 180.12868 * 10 9 8 37 37 H 1.09003 * 109.46989 * 300.12612 * 10 9 8 38 38 H 1.08999 * 110.41454 * 280.71310 * 11 9 8 39 39 H 1.09000 * 110.41257 * 158.26248 * 11 9 8 40 40 H 1.08003 * 119.96829 * 359.97438 * 13 12 2 41 41 H 1.07998 * 120.03274 * 179.97438 * 14 13 12 42 42 H 0.96995 * 120.00180 * 180.02562 * 20 19 17 43 43 H 1.08004 * 120.03250 * 179.72259 * 25 15 14 44 44 H 1.08003 * 119.95897 * 180.22848 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0825 0.2225 2.3468 6 1 1.2850 0.9628 2.2840 7 6 1.9778 -0.5669 3.6680 8 6 3.3005 -0.2820 4.4115 9 7 3.7731 1.0108 3.8524 10 6 5.2159 1.1819 4.0690 11 6 3.4596 0.9181 2.4032 12 6 2.0324 -0.7104 -1.2306 13 6 2.4586 0.0213 -2.3240 14 6 2.9190 -0.6267 -3.4533 15 6 2.9541 -2.0146 -3.4899 16 8 3.4066 -2.6544 -4.5984 17 6 3.9140 -1.8870 -5.5841 18 1 3.8724 -0.8106 -5.5060 19 6 4.4840 -2.4795 -6.7004 20 7 4.9741 -1.7307 -7.6647 21 14 4.5559 -4.3413 -6.8355 22 1 3.3275 -4.8367 -7.5070 23 1 5.7472 -4.7343 -7.6301 24 1 4.6501 -4.9329 -5.4767 25 6 2.5206 -2.7465 -2.3921 26 6 2.0659 -2.0925 -1.2641 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.4496 -1.4979 1.4099 31 1 1.1300 -0.2128 4.2544 32 1 1.8780 -1.6332 3.4650 33 1 3.1222 -0.1903 5.4829 34 1 4.0255 -1.0715 4.2138 35 1 5.7556 0.3724 3.5774 36 1 5.5351 2.1371 3.6521 37 1 5.4276 1.1631 5.1381 38 1 4.2101 0.3174 1.8896 39 1 3.4011 1.9133 1.9626 40 1 2.4306 1.1006 -2.2951 41 1 3.2513 -0.0548 -4.3071 42 1 5.3725 -2.1453 -8.4458 43 1 2.5426 -3.8260 -2.4193 44 1 1.7321 -2.6612 -0.4087 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049084734.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:02 Heat of formation + Delta-G solvation = -11.889414 kcal Electronic energy + Delta-G solvation = -22763.891334 eV Core-core repulsion = 19487.938472 eV Total energy + Delta-G solvation = -3275.952862 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.98189 -40.14761 -38.78081 -36.61020 -34.45276 -33.14053 -31.82111 -30.69977 -29.48595 -28.56528 -27.25091 -26.01285 -23.93075 -23.61898 -22.17620 -21.33439 -21.25915 -19.70670 -19.08951 -17.26746 -17.10328 -16.60883 -16.21340 -15.85901 -15.67921 -15.61521 -15.38987 -15.10077 -14.94190 -14.45697 -14.26084 -14.10386 -14.05141 -13.86641 -13.49903 -13.38010 -13.00919 -12.73064 -12.55292 -12.43915 -12.40347 -12.23007 -12.17078 -12.03617 -11.82531 -11.74732 -11.60408 -11.24101 -10.88897 -9.76167 -9.51786 -9.31276 -8.91507 -8.49732 -6.22035 0.60977 0.69719 1.30798 1.35574 1.51443 2.28120 2.76010 2.94392 3.08185 3.20479 3.47295 3.68185 3.75087 4.01253 4.09783 4.16867 4.19915 4.37597 4.39372 4.41045 4.49989 4.53889 4.61907 4.68752 4.72530 4.77656 4.88491 4.91031 4.95183 4.98192 5.01013 5.05735 5.09740 5.17344 5.28247 5.30261 5.44006 5.59435 5.73504 5.80267 5.86838 5.93712 6.02163 6.22187 6.30164 6.56661 6.84902 7.60780 8.62186 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.024108 B = 0.003083 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.146718 B = 9079.686520 C = 9380.346002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.144 3.856 3 H 0.080 0.920 4 N -0.681 5.681 5 C 0.087 3.913 6 H 0.062 0.938 7 C -0.121 4.121 8 C 0.033 3.967 9 N -0.527 5.527 10 C 0.013 3.987 11 C 0.039 3.961 12 C -0.131 4.131 13 C -0.074 4.074 14 C -0.236 4.236 15 C 0.115 3.885 16 O -0.248 6.248 17 C -0.398 4.398 18 H 0.079 0.921 19 C 0.008 3.992 20 N -0.926 5.926 21 Si 0.972 3.028 22 H -0.265 1.265 23 H -0.268 1.268 24 H -0.263 1.263 25 C -0.193 4.193 26 C -0.048 4.048 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.351 0.649 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.040 0.960 35 H 0.023 0.977 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.039 0.961 39 H 0.071 0.929 40 H 0.131 0.869 41 H 0.105 0.895 42 H 0.284 0.716 43 H 0.125 0.875 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.592 2.671 25.116 26.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.034 3.966 3 H 0.098 0.902 4 N -0.314 5.314 5 C -0.023 4.023 6 H 0.080 0.920 7 C -0.159 4.159 8 C -0.095 4.095 9 N -0.251 5.251 10 C -0.136 4.136 11 C -0.089 4.089 12 C -0.132 4.132 13 C -0.093 4.093 14 C -0.256 4.256 15 C 0.067 3.933 16 O -0.156 6.156 17 C -0.475 4.475 18 H 0.097 0.903 19 C -0.189 4.189 20 N -0.567 5.567 21 Si 0.794 3.206 22 H -0.190 1.190 23 H -0.192 1.192 24 H -0.188 1.188 25 C -0.212 4.212 26 C -0.066 4.066 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.172 0.828 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.058 0.942 35 H 0.042 0.958 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.058 0.942 39 H 0.090 0.910 40 H 0.149 0.851 41 H 0.122 0.878 42 H 0.094 0.906 43 H 0.143 0.857 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.071 2.994 24.979 26.133 hybrid contribution 0.122 -0.747 -1.235 1.449 sum -6.949 2.248 23.744 24.842 Atomic orbital electron populations 1.22417 0.95133 1.02801 1.02497 1.20193 0.93196 0.96385 0.86836 0.90216 1.60573 1.58194 1.09656 1.02959 1.22175 0.96016 0.94242 0.89857 0.91982 1.22512 0.97891 1.00756 0.94736 1.23124 0.96224 0.89893 1.00295 1.65396 1.15957 1.32681 1.11103 1.22526 0.87417 1.01120 1.02507 1.23162 0.97023 0.99841 0.88911 1.19674 1.04335 0.93620 0.95574 1.20888 0.96568 0.99830 0.91978 1.21223 1.09433 0.94078 1.00838 1.19669 0.94478 0.92002 0.87194 1.83508 1.71582 1.36343 1.24131 1.20701 1.38112 0.91408 0.97242 0.90344 1.25286 0.94882 1.04938 0.93841 1.69732 1.39737 1.38017 1.09205 0.85202 0.78538 0.77939 0.78935 1.18983 1.19241 1.18753 1.20529 1.08104 0.99941 0.92669 1.20732 0.96251 0.93943 0.95712 0.92442 0.91815 0.91147 0.82826 0.89597 0.89716 0.89148 0.94162 0.95814 0.91216 0.90130 0.94231 0.91007 0.85109 0.87753 0.90610 0.85669 0.83339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 9.12 71.98 0.66 -2.26 16 2 C 0.14 3.01 2.64 44.17 0.12 3.13 16 3 H 0.08 1.70 7.69 -2.38 -0.02 1.69 16 4 N -0.68 -12.45 5.49 -468.72 -2.57 -15.03 16 5 C 0.09 1.42 3.15 45.81 0.14 1.57 16 6 H 0.06 0.97 7.19 -2.39 -0.02 0.96 16 7 C -0.12 -1.55 6.67 31.49 0.21 -1.34 16 8 C 0.03 0.48 6.49 86.45 0.56 1.05 16 9 N -0.53 -9.56 5.66 -907.59 -5.14 -14.70 16 10 C 0.01 0.21 9.53 127.69 1.22 1.43 16 11 C 0.04 0.78 6.16 86.45 0.53 1.31 16 12 C -0.13 -3.84 4.96 -19.83 -0.10 -3.94 16 13 C -0.07 -2.60 9.66 22.25 0.21 -2.38 16 14 C -0.24 -10.64 9.17 22.39 0.21 -10.43 16 15 C 0.12 5.50 6.65 22.58 0.15 5.65 16 16 O -0.25 -13.78 8.59 -22.77 -0.20 -13.97 16 17 C -0.40 -24.01 9.95 67.92 0.68 -23.33 16 18 H 0.08 4.97 5.44 -2.91 -0.02 4.95 16 19 C 0.01 0.50 5.49 84.83 0.47 0.97 16 20 N -0.93 -56.29 13.96 21.61 0.30 -55.98 16 21 Si 0.97 46.23 28.62 68.60 1.96 48.19 16 22 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 25 C -0.19 -7.48 9.99 22.39 0.22 -7.25 16 26 C -0.05 -1.46 9.31 22.25 0.21 -1.26 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 29 H 0.07 0.96 7.49 -2.39 -0.02 0.95 16 30 H 0.35 5.30 7.13 -89.69 -0.64 4.66 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 0.97 7.52 -2.39 -0.02 0.95 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.04 0.65 7.98 -2.39 -0.02 0.63 16 35 H 0.02 0.41 7.97 -2.39 -0.02 0.39 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.04 0.95 7.82 -2.39 -0.02 0.94 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.13 3.89 8.03 -2.91 -0.02 3.87 16 41 H 0.10 5.20 5.64 -2.91 -0.02 5.18 16 42 H 0.28 15.83 8.31 -92.71 -0.77 15.05 16 43 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 44 H 0.15 3.40 7.24 -2.91 -0.02 3.38 16 Total: -1.00 -67.40 353.07 0.19 -67.21 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.35 Total: 21.37 kcal Atomic # 6 Polarization: -42.58 SS G_CDS: 5.48 Total: -37.09 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -7.41 Total: -85.71 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.20 Total: -13.97 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.96 Total: 48.19 kcal Total: -67.40 0.19 -67.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049084734.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.319 kcal (2) G-P(sol) polarization free energy of solvation -67.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds