Wall clock time and date at job start Tue Mar 31 2020 07:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21292 * 120.00034 * 2 1 4 4 N 1.34777 * 120.00290 * 180.02562 * 2 1 3 5 5 C 1.39924 * 120.00186 * 185.27302 * 4 2 1 6 6 C 1.38899 * 120.06793 * 213.51703 * 5 4 2 7 7 C 1.38095 * 119.92368 * 180.27372 * 6 5 4 8 8 C 1.38301 * 120.07127 * 359.77046 * 7 6 5 9 9 C 1.38254 * 120.14301 * 359.95716 * 8 7 6 10 10 C 1.50704 * 119.96743 * 180.02562 * 9 8 7 11 11 H 1.08992 * 109.47586 * 200.02243 * 10 9 8 12 12 C 1.52999 * 109.46800 * 80.02040 * 10 9 8 13 13 N 1.46907 * 109.47106 * 320.02464 * 10 9 8 14 14 C 1.46897 * 110.99847 * 204.99480 * 13 10 9 15 15 C 1.53002 * 109.46876 * 179.97438 * 14 13 10 16 16 C 1.53004 * 109.47060 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.46796 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00350 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99434 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00563 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99841 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47222 * 90.00222 * 21 19 17 23 23 H 1.48504 * 109.47276 * 210.00248 * 21 19 17 24 24 H 1.48501 * 109.47169 * 330.00150 * 21 19 17 25 25 C 1.38138 * 120.07265 * 0.04420 * 9 8 7 26 26 H 1.09002 * 109.46739 * 269.99625 * 1 2 3 27 27 H 1.09001 * 109.46846 * 29.99855 * 1 2 3 28 28 H 1.08997 * 109.47093 * 150.00175 * 1 2 3 29 29 H 0.97010 * 119.99802 * 5.26752 * 4 2 1 30 30 H 1.07989 * 120.03684 * 0.02562 * 6 5 4 31 31 H 1.07995 * 119.96204 * 179.74585 * 7 6 5 32 32 H 1.08000 * 119.92520 * 179.97438 * 8 7 6 33 33 H 1.09003 * 109.47193 * 299.99910 * 12 10 9 34 34 H 1.08997 * 109.47238 * 60.00457 * 12 10 9 35 35 H 1.09003 * 109.47063 * 180.02562 * 12 10 9 36 36 H 1.00900 * 111.00135 * 81.03936 * 13 10 9 37 37 H 1.08991 * 109.47465 * 300.00018 * 14 13 10 38 38 H 1.09001 * 109.47107 * 59.99831 * 14 13 10 39 39 H 1.09004 * 109.46950 * 300.00008 * 15 14 13 40 40 H 1.09001 * 109.47303 * 60.00058 * 15 14 13 41 41 H 1.08998 * 109.46625 * 299.99971 * 16 15 14 42 42 H 1.09001 * 109.47374 * 59.99663 * 16 15 14 43 43 H 0.96993 * 120.00385 * 180.02562 * 20 19 17 44 44 H 1.07996 * 120.03431 * 179.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.5758 -1.1698 0.1108 6 6 4.3242 -2.1414 -0.5412 7 6 5.7002 -2.1445 -0.4247 8 6 6.3334 -1.1788 0.3364 9 6 5.5917 -0.2070 0.9821 10 6 6.2858 0.8437 1.8099 11 1 5.5743 1.2853 2.5076 12 6 6.8411 1.9330 0.8900 13 7 7.3884 0.2270 2.5596 14 6 7.7005 1.0008 3.7686 15 6 8.8504 0.3287 4.5215 16 6 9.1751 1.1343 5.7811 17 6 10.3073 0.4720 6.5230 18 1 10.7513 -0.4327 6.1347 19 6 10.7772 1.0217 7.6969 20 7 10.2369 2.1237 8.1696 21 14 12.1811 0.2012 8.6162 22 1 13.4750 0.7472 8.1334 23 1 12.0432 0.4676 10.0706 24 1 12.1413 -1.2636 8.3754 25 6 4.2149 -0.1983 0.8696 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6990 -2.0055 -0.0780 30 1 3.8302 -2.8958 -1.1354 31 1 6.2824 -2.9021 -0.9281 32 1 7.4096 -1.1837 0.4263 33 1 7.5527 1.4914 0.1923 34 1 6.0230 2.3906 0.3338 35 1 7.3435 2.6927 1.4887 36 1 8.2058 0.1198 1.9779 37 1 7.9921 2.0126 3.4873 38 1 6.8208 1.0416 4.4110 39 1 8.5583 -0.6830 4.8029 40 1 9.7302 0.2875 3.8793 41 1 9.4670 2.1461 5.5000 42 1 8.2952 1.1752 6.4232 43 1 10.5677 2.5105 8.9952 44 1 3.6361 0.5608 1.3745 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578444.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:56 Heat of formation + Delta-G solvation = -29.342340 kcal Electronic energy + Delta-G solvation = -22067.784363 eV Core-core repulsion = 18791.074685 eV Total energy + Delta-G solvation = -3276.709678 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.74014 -38.99396 -36.93155 -34.97584 -33.83161 -32.19268 -31.14446 -30.39204 -28.82077 -28.50637 -25.88306 -23.74582 -23.20170 -22.23779 -21.01122 -20.38667 -19.99545 -17.60074 -17.13846 -16.37045 -16.21520 -15.80107 -15.29260 -15.01236 -14.71116 -14.41246 -14.15863 -13.90112 -13.55961 -13.40756 -13.14332 -13.07798 -12.73710 -12.42648 -12.32099 -12.09250 -11.80631 -11.74538 -11.34826 -11.22321 -10.93605 -10.81992 -10.58053 -10.53374 -10.39372 -10.11575 -9.65617 -9.30479 -9.02577 -8.78125 -8.30600 -8.22005 -8.09952 -5.95744 -3.97663 1.19667 1.36355 2.30734 2.77014 3.34802 3.40750 3.44726 3.73366 4.29978 4.44321 4.52727 4.72236 4.79784 4.86683 4.93988 5.05196 5.15243 5.29589 5.33268 5.36562 5.39946 5.50695 5.52144 5.69207 5.78323 5.90343 5.95146 6.01050 6.14939 6.18552 6.27249 6.38334 6.44513 6.61411 6.77907 6.85707 6.96997 7.07243 7.18774 7.39985 7.67294 7.73361 7.78681 7.88753 8.05088 8.48396 9.09677 9.66055 11.15750 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.025092 B = 0.002473 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.645013 B =11317.719030 C =11684.989919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.507 3.493 3 O -0.524 6.524 4 N -0.674 5.674 5 C 0.138 3.862 6 C -0.153 4.153 7 C -0.103 4.103 8 C -0.111 4.111 9 C -0.041 4.041 10 C 0.119 3.881 11 H 0.085 0.915 12 C -0.176 4.176 13 N -0.682 5.682 14 C 0.059 3.941 15 C -0.106 4.106 16 C 0.022 3.978 17 C -0.518 4.518 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.116 4.116 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.410 0.590 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.338 0.662 37 H 0.026 0.974 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.044 0.956 41 H 0.013 0.987 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.787 -7.663 -20.816 29.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.295 3.705 3 O -0.399 6.399 4 N -0.320 5.320 5 C 0.045 3.955 6 C -0.174 4.174 7 C -0.121 4.121 8 C -0.129 4.129 9 C -0.042 4.042 10 C 0.009 3.991 11 H 0.103 0.897 12 C -0.235 4.235 13 N -0.312 5.312 14 C -0.069 4.069 15 C -0.144 4.144 16 C -0.016 4.016 17 C -0.556 4.556 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.536 5.536 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.137 4.137 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.100 0.900 29 H 0.245 0.755 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.156 0.844 37 H 0.044 0.956 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.032 0.968 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.828 -7.193 -20.305 28.610 hybrid contribution 0.919 -0.087 0.159 0.937 sum -17.909 -7.280 -20.146 27.921 Atomic orbital electron populations 1.21892 0.90816 1.05141 1.05210 1.21018 0.90877 0.83253 0.75334 1.90773 1.70503 1.31195 1.47437 1.43629 1.05478 1.09764 1.73133 1.17644 0.82356 0.97808 0.97716 1.20786 0.94275 1.00569 1.01724 1.20910 0.93659 0.98681 0.98883 1.20937 1.00272 0.94601 0.97133 1.19720 0.92532 0.95955 0.95993 1.20444 0.94106 0.90881 0.93658 0.89702 1.22464 1.01568 0.99318 1.00174 1.60668 1.10091 1.51850 1.08605 1.22161 0.99771 0.94579 0.90400 1.21618 0.94795 1.00015 0.97996 1.19067 0.96503 0.94987 0.91029 1.21262 1.17212 1.10066 1.07052 0.92677 1.25037 0.97016 0.95057 0.97485 1.69966 1.41988 1.20122 1.21569 0.86597 0.82590 0.79856 0.78972 1.20723 1.21260 1.19864 1.20928 0.94148 0.99493 0.99101 0.88373 0.88534 0.90027 0.75465 0.86174 0.85823 0.85831 0.92340 0.91972 0.91975 0.84431 0.95583 0.91503 0.92570 0.93680 0.96823 0.96591 0.93064 0.85142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 10.31 36.01 0.37 -0.38 16 2 C 0.51 4.64 7.68 -10.98 -0.08 4.56 16 3 O -0.52 -7.29 14.79 5.55 0.08 -7.20 16 4 N -0.67 -5.41 5.34 -9.86 -0.05 -5.47 16 5 C 0.14 1.53 6.28 -83.69 -0.53 1.00 16 6 C -0.15 -1.48 9.97 -39.39 -0.39 -1.87 16 7 C -0.10 -1.05 10.04 -39.61 -0.40 -1.45 16 8 C -0.11 -1.32 9.32 -39.55 -0.37 -1.69 16 9 C -0.04 -0.54 4.95 -104.65 -0.52 -1.06 16 10 C 0.12 1.63 2.79 -68.86 -0.19 1.44 16 11 H 0.08 1.23 7.66 -51.93 -0.40 0.83 16 12 C -0.18 -2.18 9.14 37.16 0.34 -1.84 16 13 N -0.68 -10.30 5.70 -107.95 -0.62 -10.92 16 14 C 0.06 1.06 5.48 -3.82 -0.02 1.03 16 15 C -0.11 -2.25 5.41 -26.73 -0.14 -2.40 16 16 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 17 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 18 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 19 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 21 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 C -0.12 -1.54 8.28 -39.39 -0.33 -1.87 16 26 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.41 1.73 8.82 -40.82 -0.36 1.38 16 30 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 31 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.12 1.38 7.24 -52.49 -0.38 1.00 16 33 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.79 7.45 -51.93 -0.39 0.40 16 36 H 0.34 4.71 7.82 -39.29 -0.31 4.40 16 37 H 0.03 0.46 7.43 -51.93 -0.39 0.07 16 38 H 0.07 1.23 8.06 -51.93 -0.42 0.81 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.13 1.88 6.39 -52.49 -0.34 1.54 16 LS Contribution 365.45 15.07 5.51 5.51 Total: -1.00 -34.44 365.45 -9.34 -43.78 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -7.16 Total: 1.93 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -2.81 Total: -17.89 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.07 Total: -43.15 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: 0.08 Total: -7.20 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.44 -9.34 -43.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578444.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.433 kcal (2) G-P(sol) polarization free energy of solvation -34.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds