Wall clock time and date at job start Tue Mar 31 2020 07:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21292 * 120.00034 * 2 1 4 4 N 1.34777 * 120.00290 * 180.02562 * 2 1 3 5 5 C 1.39924 * 120.00186 * 185.27302 * 4 2 1 6 6 C 1.38899 * 120.06793 * 213.51703 * 5 4 2 7 7 C 1.38095 * 119.92368 * 180.27372 * 6 5 4 8 8 C 1.38301 * 120.07127 * 359.77046 * 7 6 5 9 9 C 1.38254 * 120.14301 * 359.95716 * 8 7 6 10 10 C 1.50704 * 119.96743 * 180.02562 * 9 8 7 11 11 H 1.08992 * 109.47586 * 200.02243 * 10 9 8 12 12 C 1.52999 * 109.46800 * 80.02040 * 10 9 8 13 13 N 1.46907 * 109.47106 * 320.02464 * 10 9 8 14 14 C 1.46897 * 110.99847 * 204.99480 * 13 10 9 15 15 C 1.53002 * 109.46876 * 179.97438 * 14 13 10 16 16 C 1.53004 * 109.47060 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.46796 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00350 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99434 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00563 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99841 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47222 * 90.00222 * 21 19 17 23 23 H 1.48504 * 109.47276 * 210.00248 * 21 19 17 24 24 H 1.48501 * 109.47169 * 330.00150 * 21 19 17 25 25 C 1.38138 * 120.07265 * 0.04420 * 9 8 7 26 26 H 1.09002 * 109.46739 * 269.99625 * 1 2 3 27 27 H 1.09001 * 109.46846 * 29.99855 * 1 2 3 28 28 H 1.08997 * 109.47093 * 150.00175 * 1 2 3 29 29 H 0.97010 * 119.99802 * 5.26752 * 4 2 1 30 30 H 1.07989 * 120.03684 * 0.02562 * 6 5 4 31 31 H 1.07995 * 119.96204 * 179.74585 * 7 6 5 32 32 H 1.08000 * 119.92520 * 179.97438 * 8 7 6 33 33 H 1.09003 * 109.47193 * 299.99910 * 12 10 9 34 34 H 1.08997 * 109.47238 * 60.00457 * 12 10 9 35 35 H 1.09003 * 109.47063 * 180.02562 * 12 10 9 36 36 H 1.00900 * 111.00135 * 81.03936 * 13 10 9 37 37 H 1.08991 * 109.47465 * 300.00018 * 14 13 10 38 38 H 1.09001 * 109.47107 * 59.99831 * 14 13 10 39 39 H 1.09004 * 109.46950 * 300.00008 * 15 14 13 40 40 H 1.09001 * 109.47303 * 60.00058 * 15 14 13 41 41 H 1.08998 * 109.46625 * 299.99971 * 16 15 14 42 42 H 1.09001 * 109.47374 * 59.99663 * 16 15 14 43 43 H 0.96993 * 120.00385 * 180.02562 * 20 19 17 44 44 H 1.07996 * 120.03431 * 179.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.5758 -1.1698 0.1108 6 6 4.3242 -2.1414 -0.5412 7 6 5.7002 -2.1445 -0.4247 8 6 6.3334 -1.1788 0.3364 9 6 5.5917 -0.2070 0.9821 10 6 6.2858 0.8437 1.8099 11 1 5.5743 1.2853 2.5076 12 6 6.8411 1.9330 0.8900 13 7 7.3884 0.2270 2.5596 14 6 7.7005 1.0008 3.7686 15 6 8.8504 0.3287 4.5215 16 6 9.1751 1.1343 5.7811 17 6 10.3073 0.4720 6.5230 18 1 10.7513 -0.4327 6.1347 19 6 10.7772 1.0217 7.6969 20 7 10.2369 2.1237 8.1696 21 14 12.1811 0.2012 8.6162 22 1 13.4750 0.7472 8.1334 23 1 12.0432 0.4676 10.0706 24 1 12.1413 -1.2636 8.3754 25 6 4.2149 -0.1983 0.8696 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6990 -2.0055 -0.0780 30 1 3.8302 -2.8958 -1.1354 31 1 6.2824 -2.9021 -0.9281 32 1 7.4096 -1.1837 0.4263 33 1 7.5527 1.4914 0.1923 34 1 6.0230 2.3906 0.3338 35 1 7.3435 2.6927 1.4887 36 1 8.2058 0.1198 1.9779 37 1 7.9921 2.0126 3.4873 38 1 6.8208 1.0416 4.4110 39 1 8.5583 -0.6830 4.8029 40 1 9.7302 0.2875 3.8793 41 1 9.4670 2.1461 5.5000 42 1 8.2952 1.1752 6.4232 43 1 10.5677 2.5105 8.9952 44 1 3.6361 0.5608 1.3745 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578444.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:55 Heat of formation + Delta-G solvation = -52.009155 kcal Electronic energy + Delta-G solvation = -22068.767270 eV Core-core repulsion = 18791.074685 eV Total energy + Delta-G solvation = -3277.692585 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.52422 -39.90358 -38.11089 -36.14378 -35.41469 -33.90349 -31.90569 -31.63661 -29.99605 -29.24566 -27.69748 -25.02818 -24.10321 -23.74908 -22.12834 -21.61056 -21.19035 -18.57850 -18.33017 -17.87508 -17.13704 -16.69915 -16.56474 -16.48539 -16.03673 -15.80751 -15.12716 -14.92009 -14.63038 -14.49198 -14.31071 -14.15153 -13.73371 -13.53115 -13.37492 -13.30683 -13.05225 -13.03439 -12.72494 -12.62545 -12.47692 -12.39328 -12.15164 -11.89001 -11.55143 -11.45026 -11.32583 -11.06166 -10.90954 -10.55619 -9.71022 -9.36318 -9.03526 -8.20151 -6.31410 0.35169 0.48507 1.39814 1.41708 1.53050 1.60436 2.15066 2.41043 2.84335 3.12797 3.22805 3.72214 3.90217 3.98643 4.13430 4.20712 4.27209 4.28601 4.41101 4.46038 4.49611 4.60418 4.63051 4.67694 4.69618 4.76846 4.80554 5.00423 5.03577 5.10468 5.11144 5.16456 5.24325 5.38106 5.44769 5.51496 5.59752 5.71020 5.75012 5.85653 6.05775 6.13833 6.26613 6.46453 6.47399 6.85641 7.15469 7.37799 8.91950 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.025092 B = 0.002473 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.645013 B =11317.719030 C =11684.989919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.499 3.501 3 O -0.580 6.580 4 N -0.662 5.662 5 C 0.130 3.870 6 C -0.146 4.146 7 C -0.101 4.101 8 C -0.124 4.124 9 C -0.057 4.057 10 C 0.122 3.878 11 H 0.067 0.933 12 C -0.169 4.169 13 N -0.677 5.677 14 C 0.073 3.927 15 C -0.090 4.090 16 C 0.025 3.975 17 C -0.542 4.542 18 H 0.061 0.939 19 C -0.004 4.004 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.263 1.263 25 C -0.140 4.140 26 H 0.110 0.890 27 H 0.094 0.906 28 H 0.116 0.884 29 H 0.430 0.570 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.129 0.871 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.347 0.653 37 H 0.026 0.974 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.054 0.946 41 H -0.009 1.009 42 H -0.011 1.011 43 H 0.264 0.736 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.960 -10.258 -22.344 31.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.290 3.710 3 O -0.459 6.459 4 N -0.309 5.309 5 C 0.036 3.964 6 C -0.166 4.166 7 C -0.119 4.119 8 C -0.142 4.142 9 C -0.058 4.058 10 C 0.012 3.988 11 H 0.086 0.914 12 C -0.227 4.227 13 N -0.309 5.309 14 C -0.056 4.056 15 C -0.128 4.128 16 C -0.013 4.013 17 C -0.580 4.580 18 H 0.079 0.921 19 C -0.201 4.201 20 N -0.576 5.576 21 Si 0.792 3.208 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.187 1.187 25 C -0.161 4.161 26 H 0.129 0.871 27 H 0.113 0.887 28 H 0.135 0.865 29 H 0.269 0.731 30 H 0.173 0.827 31 H 0.171 0.829 32 H 0.147 0.853 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.166 0.834 37 H 0.044 0.956 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.009 0.991 42 H 0.007 0.993 43 H 0.072 0.928 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -19.031 -9.836 -21.859 30.606 hybrid contribution 0.899 0.705 0.594 1.287 sum -18.132 -9.132 -21.265 29.400 Atomic orbital electron populations 1.21921 0.86843 1.06817 1.06449 1.21955 0.92751 0.82547 0.73792 1.90753 1.71952 1.33203 1.50035 1.43608 1.04481 1.10646 1.72156 1.17841 0.83915 0.97444 0.97231 1.21172 0.94195 1.00359 1.00878 1.21292 0.94250 0.98431 0.97936 1.21092 1.00602 0.94883 0.97663 1.19656 0.92679 0.96568 0.96942 1.20379 0.93208 0.91634 0.93537 0.91447 1.22380 1.01646 0.98744 0.99976 1.60570 1.10813 1.51327 1.08147 1.21851 0.97972 0.94531 0.91271 1.21355 0.96371 0.98954 0.96102 1.18975 0.94915 0.94559 0.92850 1.21698 1.17991 1.10496 1.07792 0.92097 1.26032 0.99947 0.95628 0.98509 1.70104 1.43650 1.21648 1.22162 0.85410 0.78899 0.79138 0.77377 1.19637 1.20733 1.18684 1.20881 0.94302 1.00291 1.00624 0.87142 0.88690 0.86518 0.73071 0.82674 0.82948 0.85294 0.91039 0.92089 0.92537 0.83377 0.95599 0.92602 0.92915 0.92735 0.99097 0.99276 0.92777 0.87438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 10.31 71.24 0.73 -0.37 16 2 C 0.50 8.88 7.68 87.66 0.67 9.55 16 3 O -0.58 -16.87 14.79 -3.07 -0.05 -16.91 16 4 N -0.66 -9.62 5.34 -303.49 -1.62 -11.24 16 5 C 0.13 2.74 6.28 38.15 0.24 2.98 16 6 C -0.15 -2.42 9.97 22.39 0.22 -2.20 16 7 C -0.10 -1.79 10.04 22.25 0.22 -1.57 16 8 C -0.12 -2.80 9.32 22.29 0.21 -2.59 16 9 C -0.06 -1.53 4.95 -19.88 -0.10 -1.63 16 10 C 0.12 3.46 2.79 44.17 0.12 3.59 16 11 H 0.07 2.11 7.66 -2.39 -0.02 2.09 16 12 C -0.17 -4.25 9.14 71.98 0.66 -3.59 16 13 N -0.68 -20.55 5.70 -495.45 -2.83 -23.38 16 14 C 0.07 2.66 5.48 86.30 0.47 3.13 16 15 C -0.09 -3.86 5.41 30.60 0.17 -3.69 16 16 C 0.02 1.35 4.97 29.85 0.15 1.50 16 17 C -0.54 -31.80 9.11 25.60 0.23 -31.56 16 18 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 19 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 20 N -0.94 -58.43 13.29 21.45 0.28 -58.14 16 21 Si 0.97 45.20 29.54 68.60 2.03 47.23 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 24 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 25 C -0.14 -3.84 8.28 22.39 0.19 -3.66 16 26 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.12 -0.03 8.14 -2.39 -0.02 -0.05 16 29 H 0.43 2.42 8.82 -92.70 -0.82 1.61 16 30 H 0.16 1.44 8.06 -2.92 -0.02 1.42 16 31 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 32 H 0.13 2.69 7.24 -2.91 -0.02 2.67 16 33 H 0.07 1.59 8.13 -2.39 -0.02 1.57 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.06 1.46 7.45 -2.39 -0.02 1.44 16 36 H 0.35 9.42 7.82 -89.69 -0.70 8.72 16 37 H 0.03 0.94 7.43 -2.39 -0.02 0.93 16 38 H 0.06 2.15 8.06 -2.39 -0.02 2.14 16 39 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 41 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 42 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 43 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 44 H 0.11 3.38 6.39 -2.91 -0.02 3.36 16 Total: -1.00 -77.17 365.45 1.95 -75.23 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -0.53 Total: 17.07 kcal Atomic # 6 Polarization: -34.51 SS G_CDS: 4.65 Total: -29.86 kcal Atomic # 7 Polarization: -88.59 SS G_CDS: -4.16 Total: -92.75 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.05 Total: -16.91 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -77.17 1.95 -75.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578444.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.216 kcal (2) G-P(sol) polarization free energy of solvation -77.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds