Wall clock time and date at job start Tue Mar 31 2020 08:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46892 * 109.47486 * 295.00155 * 4 2 1 6 6 C 1.46905 * 110.99837 * 293.95486 * 5 4 2 7 7 C 1.46905 * 111.00567 * 170.00024 * 5 4 2 8 8 C 1.50695 * 109.47434 * 189.99928 * 7 5 4 9 9 O 1.21289 * 120.00193 * 0.02562 * 8 7 5 10 10 N 1.34772 * 119.99988 * 179.97438 * 8 7 5 11 11 C 1.46506 * 119.99980 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47000 * 180.02562 * 11 10 8 13 13 H 1.08001 * 120.00460 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00128 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99732 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00371 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47052 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.47048 * 119.99863 * 16 14 12 19 19 H 1.48498 * 109.47366 * 239.99956 * 16 14 12 20 20 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 21 21 C 1.38236 * 119.99963 * 299.73020 * 20 2 1 22 22 C 1.38236 * 120.00036 * 179.81111 * 21 20 2 23 23 C 1.38226 * 119.99834 * 0.39071 * 22 21 20 24 24 C 1.38237 * 120.00085 * 359.86461 * 23 22 21 25 25 C 1.38229 * 120.00216 * 120.00264 * 20 2 1 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 30 30 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 31 31 H 1.09003 * 109.47034 * 60.00137 * 6 5 4 32 32 H 1.09009 * 109.46956 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.47265 * 299.99320 * 6 5 4 34 34 H 1.08997 * 109.46495 * 310.00319 * 7 5 4 35 35 H 1.08999 * 109.46712 * 69.99812 * 7 5 4 36 36 H 0.96998 * 120.00359 * 0.02562 * 10 8 7 37 37 H 1.08996 * 109.47056 * 300.00105 * 11 10 8 38 38 H 1.09001 * 109.46940 * 60.00025 * 11 10 8 39 39 H 0.97006 * 119.99963 * 180.02562 * 15 14 12 40 40 H 1.08010 * 119.99941 * 359.97438 * 21 20 2 41 41 H 1.08001 * 119.99466 * 180.23187 * 22 21 20 42 42 H 1.08005 * 120.00406 * 179.83264 * 23 22 21 43 43 H 1.07998 * 120.00065 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.00084 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6513 0.0374 2.4456 6 6 2.3341 1.3374 2.4894 7 6 1.9123 -0.7357 3.6672 8 6 1.2829 -0.0398 4.8463 9 8 0.6760 0.9980 4.6850 10 7 1.3933 -0.5709 6.0800 11 6 0.7808 0.1054 7.2262 12 6 1.0487 -0.6877 8.4793 13 1 1.6186 -1.6037 8.4273 14 6 0.5673 -0.2434 9.6925 15 7 -0.1262 0.8722 9.7560 16 14 0.8987 -1.2268 11.2457 17 1 1.6950 -2.4336 10.9070 18 1 1.6563 -0.3890 12.2098 19 1 -0.3911 -1.6392 11.8552 20 6 2.0324 -0.7104 -1.2304 21 6 1.7031 -2.0355 -1.4464 22 6 2.1607 -2.6860 -2.5770 23 6 2.9543 -2.0139 -3.4875 24 6 3.2880 -0.6903 -3.2690 25 6 2.8272 -0.0387 -2.1403 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6053 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2056 31 1 2.0678 1.9176 1.6059 32 1 2.0280 1.8785 3.3848 33 1 3.4126 1.1809 2.5100 34 1 1.4856 -1.7334 3.5638 35 1 2.9880 -0.8151 3.8239 36 1 1.8782 -1.4010 6.2091 37 1 1.2075 1.1030 7.3299 38 1 -0.2948 0.1848 7.0690 39 1 -0.4646 1.1850 10.6097 40 1 1.0861 -2.5618 -0.7330 41 1 1.9003 -3.7202 -2.7475 42 1 3.3141 -2.5228 -4.3696 43 1 3.9083 -0.1652 -3.9802 44 1 3.0878 0.9954 -1.9696 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066854057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:29:51 Heat of formation + Delta-G solvation = -16.545651 kcal Electronic energy + Delta-G solvation = -22284.792412 eV Core-core repulsion = 19008.637640 eV Total energy + Delta-G solvation = -3276.154772 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.87608 -39.01944 -37.11603 -34.32212 -33.86999 -32.31368 -31.13842 -29.68921 -28.56362 -27.08373 -26.58343 -24.17212 -22.92351 -22.58567 -21.63277 -19.83376 -19.58732 -17.22450 -17.04157 -16.10113 -15.74783 -15.50195 -15.29634 -15.07061 -14.64587 -14.36383 -14.19453 -13.78017 -13.69572 -13.38614 -13.16768 -13.04585 -12.45711 -12.36799 -12.13101 -11.94033 -11.91591 -11.61411 -11.40671 -11.29170 -11.18761 -10.94688 -10.85824 -10.82686 -10.58276 -10.30680 -9.37068 -9.14367 -9.03688 -8.85527 -8.72710 -8.17292 -7.83171 -6.16331 -4.23039 1.13933 1.17729 3.23417 3.30437 3.33442 3.41938 3.53362 3.72587 4.27332 4.45634 4.53941 4.65677 4.77742 4.86493 4.91962 5.06844 5.19765 5.27464 5.29769 5.31765 5.34777 5.41058 5.54865 5.61541 5.65132 5.74108 5.75009 5.81381 5.84010 5.95441 6.03159 6.22843 6.28542 6.33693 6.38110 6.50138 6.78588 7.00609 7.14599 7.34448 7.47810 7.53671 7.69048 7.98112 8.66022 8.80558 9.15486 9.43899 10.93886 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.039663 B = 0.002393 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.773451 B =11697.857628 C =11988.160042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.050 4.050 3 H 0.080 0.920 4 C 0.064 3.936 5 N -0.519 5.519 6 C 0.017 3.983 7 C 0.035 3.965 8 C 0.499 3.501 9 O -0.538 6.538 10 N -0.716 5.716 11 C 0.251 3.749 12 C -0.542 4.542 13 H 0.063 0.937 14 C 0.062 3.938 15 N -0.885 5.885 16 Si 0.904 3.096 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.071 4.071 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.129 4.129 24 C -0.120 4.120 25 C -0.118 4.118 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.017 0.983 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.389 0.611 37 H 0.025 0.975 38 H 0.027 0.973 39 H 0.265 0.735 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.028 -5.826 -24.440 26.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.068 4.068 3 H 0.098 0.902 4 C -0.064 4.064 5 N -0.243 5.243 6 C -0.131 4.131 7 C -0.096 4.096 8 C 0.283 3.717 9 O -0.416 6.416 10 N -0.365 5.365 11 C 0.130 3.870 12 C -0.581 4.581 13 H 0.081 0.919 14 C -0.141 4.141 15 N -0.523 5.523 16 Si 0.731 3.269 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.071 4.071 21 C -0.132 4.132 22 C -0.137 4.137 23 C -0.147 4.147 24 C -0.138 4.138 25 C -0.136 4.136 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.035 0.965 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.221 0.779 37 H 0.043 0.957 38 H 0.045 0.955 39 H 0.075 0.925 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.971 -4.850 -24.409 25.593 hybrid contribution 1.309 -1.102 0.963 1.963 sum 7.280 -5.952 -23.447 25.262 Atomic orbital electron populations 1.21741 0.93233 1.01992 1.02306 1.20181 0.97178 0.99027 0.90446 0.90174 1.22192 0.97742 0.97192 0.89271 1.61582 1.58574 1.03791 1.00312 1.22611 0.94737 0.91288 1.04438 1.22018 0.99378 0.98072 0.90134 1.20288 0.81425 0.85873 0.84109 1.90626 1.42350 1.23694 1.84971 1.46458 1.55247 1.27042 1.07762 1.19078 0.93720 0.93013 0.81141 1.21271 1.35838 1.09069 0.91876 0.91888 1.24962 0.94748 0.95129 0.99269 1.69990 1.35202 1.21035 1.26042 0.86364 0.78084 0.79869 0.82602 1.19658 1.20824 1.20789 1.19947 0.96840 0.94222 0.96104 1.21061 1.00111 0.94382 0.97647 1.21153 0.98085 0.99874 0.94620 1.21126 0.99087 0.94946 0.99525 1.21130 1.00106 0.94986 0.97575 1.21099 0.98042 0.99932 0.94535 0.93399 0.92930 0.90437 0.90671 0.94905 0.91578 0.88919 0.96485 0.88487 0.92555 0.77861 0.95660 0.95542 0.92517 0.85969 0.86203 0.86373 0.86270 0.86193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.90 37.16 0.33 -1.12 16 2 C -0.05 -0.50 2.48 -91.77 -0.23 -0.73 16 3 H 0.08 0.82 6.07 -51.93 -0.32 0.51 16 4 C 0.06 0.70 4.08 -3.83 -0.02 0.69 16 5 N -0.52 -7.22 3.95 -244.36 -0.97 -8.18 16 6 C 0.02 0.24 8.97 60.07 0.54 0.78 16 7 C 0.04 0.51 5.45 -4.98 -0.03 0.48 16 8 C 0.50 9.85 7.52 -10.99 -0.08 9.77 16 9 O -0.54 -12.76 14.33 5.55 0.08 -12.68 16 10 N -0.72 -14.97 5.55 -61.47 -0.34 -15.31 16 11 C 0.25 6.66 5.43 -5.19 -0.03 6.63 16 12 C -0.54 -14.71 9.28 -34.44 -0.32 -15.03 16 13 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 16 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 C -0.07 -0.68 4.78 -104.63 -0.50 -1.18 16 21 C -0.11 -1.04 8.76 -39.58 -0.35 -1.39 16 22 C -0.12 -0.99 10.05 -39.59 -0.40 -1.39 16 23 C -0.13 -1.03 10.05 -39.59 -0.40 -1.42 16 24 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 25 C -0.12 -1.07 9.67 -39.59 -0.38 -1.45 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.53 7.40 -51.93 -0.38 0.15 16 28 H 0.08 0.99 7.75 -51.93 -0.40 0.59 16 29 H 0.07 0.77 7.34 -51.93 -0.38 0.39 16 30 H 0.03 0.36 8.12 -51.92 -0.42 -0.07 16 31 H 0.07 0.81 6.37 -51.93 -0.33 0.48 16 32 H 0.09 1.60 5.83 -51.92 -0.30 1.30 16 33 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.10 1.20 7.93 -51.93 -0.41 0.78 16 35 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 36 H 0.39 6.94 8.32 -40.82 -0.34 6.60 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.12 1.01 7.17 -52.48 -0.38 0.63 16 41 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 43 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.12 0.94 7.95 -52.49 -0.42 0.52 16 LS Contribution 359.92 15.07 5.42 5.42 Total: -1.00 -31.98 359.92 -9.44 -41.41 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -7.00 Total: 4.00 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -2.35 Total: -5.10 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.57 Total: -48.89 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.08 Total: -12.68 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.98 -9.44 -41.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066854057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.869 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds