Wall clock time and date at job start Tue Mar 31 2020 08:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46892 * 109.47486 * 295.00155 * 4 2 1 6 6 C 1.46905 * 110.99837 * 293.95486 * 5 4 2 7 7 C 1.46905 * 111.00567 * 170.00024 * 5 4 2 8 8 C 1.50695 * 109.47434 * 189.99928 * 7 5 4 9 9 O 1.21289 * 120.00193 * 0.02562 * 8 7 5 10 10 N 1.34772 * 119.99988 * 179.97438 * 8 7 5 11 11 C 1.46506 * 119.99980 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47000 * 180.02562 * 11 10 8 13 13 H 1.08001 * 120.00460 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00128 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99732 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00371 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47052 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.47048 * 119.99863 * 16 14 12 19 19 H 1.48498 * 109.47366 * 239.99956 * 16 14 12 20 20 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 21 21 C 1.38236 * 119.99963 * 299.73020 * 20 2 1 22 22 C 1.38236 * 120.00036 * 179.81111 * 21 20 2 23 23 C 1.38226 * 119.99834 * 0.39071 * 22 21 20 24 24 C 1.38237 * 120.00085 * 359.86461 * 23 22 21 25 25 C 1.38229 * 120.00216 * 120.00264 * 20 2 1 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 30 30 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 31 31 H 1.09003 * 109.47034 * 60.00137 * 6 5 4 32 32 H 1.09009 * 109.46956 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.47265 * 299.99320 * 6 5 4 34 34 H 1.08997 * 109.46495 * 310.00319 * 7 5 4 35 35 H 1.08999 * 109.46712 * 69.99812 * 7 5 4 36 36 H 0.96998 * 120.00359 * 0.02562 * 10 8 7 37 37 H 1.08996 * 109.47056 * 300.00105 * 11 10 8 38 38 H 1.09001 * 109.46940 * 60.00025 * 11 10 8 39 39 H 0.97006 * 119.99963 * 180.02562 * 15 14 12 40 40 H 1.08010 * 119.99941 * 359.97438 * 21 20 2 41 41 H 1.08001 * 119.99466 * 180.23187 * 22 21 20 42 42 H 1.08005 * 120.00406 * 179.83264 * 23 22 21 43 43 H 1.07998 * 120.00065 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.00084 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6513 0.0374 2.4456 6 6 2.3341 1.3374 2.4894 7 6 1.9123 -0.7357 3.6672 8 6 1.2829 -0.0398 4.8463 9 8 0.6760 0.9980 4.6850 10 7 1.3933 -0.5709 6.0800 11 6 0.7808 0.1054 7.2262 12 6 1.0487 -0.6877 8.4793 13 1 1.6186 -1.6037 8.4273 14 6 0.5673 -0.2434 9.6925 15 7 -0.1262 0.8722 9.7560 16 14 0.8987 -1.2268 11.2457 17 1 1.6950 -2.4336 10.9070 18 1 1.6563 -0.3890 12.2098 19 1 -0.3911 -1.6392 11.8552 20 6 2.0324 -0.7104 -1.2304 21 6 1.7031 -2.0355 -1.4464 22 6 2.1607 -2.6860 -2.5770 23 6 2.9543 -2.0139 -3.4875 24 6 3.2880 -0.6903 -3.2690 25 6 2.8272 -0.0387 -2.1403 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6053 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2056 31 1 2.0678 1.9176 1.6059 32 1 2.0280 1.8785 3.3848 33 1 3.4126 1.1809 2.5100 34 1 1.4856 -1.7334 3.5638 35 1 2.9880 -0.8151 3.8239 36 1 1.8782 -1.4010 6.2091 37 1 1.2075 1.1030 7.3299 38 1 -0.2948 0.1848 7.0690 39 1 -0.4646 1.1850 10.6097 40 1 1.0861 -2.5618 -0.7330 41 1 1.9003 -3.7202 -2.7475 42 1 3.3141 -2.5228 -4.3696 43 1 3.9083 -0.1652 -3.9802 44 1 3.0878 0.9954 -1.9696 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066854057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:29:33 Heat of formation + Delta-G solvation = -37.135183 kcal Electronic energy + Delta-G solvation = -22285.685241 eV Core-core repulsion = 19008.637640 eV Total energy + Delta-G solvation = -3277.047601 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 14.30 seconds Orbital eigenvalues (eV) -40.83722 -40.27630 -38.22108 -36.09565 -34.92985 -34.32624 -31.74342 -30.62340 -29.95360 -28.39598 -27.93479 -25.32082 -24.30699 -23.45812 -22.71364 -21.27870 -20.62100 -18.90919 -17.86112 -17.56547 -17.11327 -16.80897 -16.47292 -16.23467 -15.91428 -15.56704 -15.43768 -15.02962 -14.53529 -14.29540 -14.24009 -14.08563 -14.02072 -13.82504 -13.58153 -13.12138 -12.88290 -12.82365 -12.76546 -12.67858 -12.44484 -12.21194 -12.14116 -12.07037 -11.58682 -11.44824 -11.38313 -10.80670 -10.61823 -9.78182 -9.76125 -9.56055 -9.22532 -8.28848 -6.45256 0.50354 0.55925 1.43246 1.44383 1.57845 1.83366 2.28202 2.47136 2.93166 3.06010 3.12178 3.78091 3.88163 4.02772 4.15359 4.22555 4.23031 4.32607 4.36060 4.39314 4.47429 4.57196 4.59213 4.68460 4.71692 4.79980 4.90211 5.06798 5.10187 5.12728 5.20701 5.22066 5.26029 5.28479 5.45293 5.51220 5.65007 5.68802 5.72059 5.80629 5.86308 5.96688 6.13347 6.19192 6.66645 6.98131 7.24523 7.56685 8.83534 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.039663 B = 0.002393 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.773451 B =11697.857628 C =11988.160042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.043 4.043 3 H 0.076 0.924 4 C 0.070 3.930 5 N -0.537 5.537 6 C 0.023 3.977 7 C 0.049 3.951 8 C 0.495 3.505 9 O -0.583 6.583 10 N -0.711 5.711 11 C 0.269 3.731 12 C -0.554 4.554 13 H 0.084 0.916 14 C 0.001 3.999 15 N -0.931 5.931 16 Si 0.985 3.015 17 H -0.252 1.252 18 H -0.279 1.279 19 H -0.279 1.279 20 C -0.082 4.082 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.134 4.134 24 C -0.127 4.127 25 C -0.131 4.131 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.032 0.968 34 H 0.126 0.874 35 H 0.083 0.917 36 H 0.408 0.592 37 H -0.015 1.015 38 H -0.015 1.015 39 H 0.268 0.732 40 H 0.128 0.872 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.700 -8.466 -25.551 28.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.062 4.062 3 H 0.094 0.906 4 C -0.057 4.057 5 N -0.261 5.261 6 C -0.125 4.125 7 C -0.082 4.082 8 C 0.281 3.719 9 O -0.464 6.464 10 N -0.362 5.362 11 C 0.146 3.854 12 C -0.592 4.592 13 H 0.102 0.898 14 C -0.198 4.198 15 N -0.570 5.570 16 Si 0.808 3.192 17 H -0.176 1.176 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.082 4.082 21 C -0.142 4.142 22 C -0.144 4.144 23 C -0.151 4.151 24 C -0.145 4.145 25 C -0.149 4.149 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.144 0.856 35 H 0.101 0.899 36 H 0.243 0.757 37 H 0.003 0.997 38 H 0.003 0.997 39 H 0.077 0.923 40 H 0.146 0.854 41 H 0.155 0.845 42 H 0.156 0.844 43 H 0.155 0.845 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.673 -7.529 -25.562 27.730 hybrid contribution 0.771 -0.233 1.187 1.434 sum 8.444 -7.762 -24.375 26.938 Atomic orbital electron populations 1.21667 0.93910 1.01991 1.01188 1.20079 0.96501 0.98916 0.90684 0.90575 1.22211 0.98297 0.97275 0.87950 1.61525 1.59414 1.04066 1.01119 1.22472 0.95539 0.91436 1.03070 1.21946 1.00367 0.98223 0.87657 1.21347 0.80353 0.85257 0.84899 1.90615 1.44218 1.25881 1.85666 1.46194 1.55398 1.27594 1.07026 1.18489 0.91314 0.91987 0.83626 1.21660 1.35865 1.09654 0.91996 0.89784 1.26089 0.94177 0.96146 1.03393 1.70153 1.36488 1.23156 1.27220 0.85103 0.78105 0.78586 0.77366 1.17575 1.20507 1.20486 1.19895 0.97695 0.94603 0.96031 1.21211 1.00418 0.94312 0.98284 1.21432 0.97852 1.00824 0.94318 1.21453 0.98604 0.94990 1.00097 1.21409 1.00114 0.95351 0.97601 1.21288 0.98218 1.00462 0.94904 0.93026 0.92363 0.92951 0.89509 0.94067 0.90398 0.92801 0.94942 0.85584 0.89897 0.75691 0.99671 0.99676 0.92296 0.85413 0.84453 0.84357 0.84509 0.85571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 8.90 71.98 0.64 -2.08 16 2 C -0.04 -0.82 2.48 -11.54 -0.03 -0.85 16 3 H 0.08 1.50 6.07 -2.39 -0.01 1.48 16 4 C 0.07 1.39 4.08 86.30 0.35 1.74 16 5 N -0.54 -14.34 3.95 -927.03 -3.67 -18.00 16 6 C 0.02 0.63 8.97 127.69 1.15 1.78 16 7 C 0.05 1.31 5.45 85.55 0.47 1.77 16 8 C 0.49 19.73 7.52 87.66 0.66 20.39 16 9 O -0.58 -28.96 14.33 -3.06 -0.04 -29.00 16 10 N -0.71 -29.99 5.55 -466.78 -2.59 -32.58 16 11 C 0.27 14.87 5.43 85.63 0.46 15.34 16 12 C -0.55 -30.22 9.28 25.60 0.24 -29.99 16 13 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 14 C 0.00 0.07 5.46 84.65 0.46 0.54 16 15 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 16 Si 0.99 42.43 29.54 68.60 2.03 44.46 16 17 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 18 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 20 C -0.08 -1.44 4.78 -19.87 -0.09 -1.53 16 21 C -0.12 -2.01 8.76 22.27 0.20 -1.82 16 22 C -0.13 -1.79 10.05 22.27 0.22 -1.57 16 23 C -0.13 -1.79 10.05 22.27 0.22 -1.57 16 24 C -0.13 -1.81 10.05 22.27 0.22 -1.58 16 25 C -0.13 -2.15 9.67 22.27 0.22 -1.93 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.12 7.40 -2.39 -0.02 1.10 16 28 H 0.05 1.35 7.75 -2.39 -0.02 1.34 16 29 H 0.09 1.53 7.34 -2.39 -0.02 1.52 16 30 H 0.04 0.77 8.12 -2.38 -0.02 0.75 16 31 H 0.08 1.91 6.37 -2.39 -0.02 1.90 16 32 H 0.05 1.93 5.83 -2.38 -0.01 1.92 16 33 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.13 2.70 7.93 -2.39 -0.02 2.68 16 35 H 0.08 1.84 8.12 -2.39 -0.02 1.83 16 36 H 0.41 14.01 8.32 -92.71 -0.77 13.23 16 37 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 38 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 39 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 40 H 0.13 1.84 7.17 -2.91 -0.02 1.81 16 41 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 42 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 43 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 44 H 0.13 1.81 7.95 -2.91 -0.02 1.79 16 Total: -1.00 -72.34 359.92 1.61 -70.73 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.21 Total: 22.09 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 5.39 Total: -1.37 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -5.97 Total: -106.91 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.04 Total: -29.00 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -72.34 1.61 -70.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066854057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.593 kcal (2) G-P(sol) polarization free energy of solvation -72.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.30 seconds