Wall clock time and date at job start Tue Mar 31 2020 08:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46898 * 2 1 4 4 C 1.50700 * 109.46768 * 119.99631 * 2 1 3 5 5 H 1.08003 * 119.99962 * 119.99882 * 4 2 1 6 6 C 1.37876 * 120.00232 * 299.99707 * 4 2 1 7 7 N 1.31513 * 119.99922 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00123 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46972 * 60.00154 * 8 6 4 10 10 H 1.48506 * 109.46992 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47118 * 300.00004 * 8 6 4 12 12 N 1.46494 * 109.47167 * 239.99336 * 2 1 3 13 13 C 1.46501 * 120.00271 * 300.00620 * 12 2 1 14 14 C 1.34783 * 119.99788 * 120.00232 * 12 2 1 15 15 O 1.21285 * 119.99923 * 359.97438 * 14 12 2 16 16 C 1.50698 * 119.99931 * 180.02562 * 14 12 2 17 17 C 1.53004 * 109.47137 * 180.02562 * 16 14 12 18 18 C 1.52998 * 109.47139 * 179.97438 * 17 16 14 19 19 H 1.09001 * 109.47396 * 54.99706 * 18 17 16 20 20 N 1.46905 * 109.47084 * 294.99736 * 18 17 16 21 21 C 1.50700 * 109.47064 * 174.99796 * 18 17 16 22 22 C 1.38240 * 119.99903 * 79.72331 * 21 18 17 23 23 C 1.38232 * 119.99801 * 179.80938 * 22 21 18 24 24 C 1.38236 * 119.99994 * 0.39681 * 23 22 21 25 25 C 1.38227 * 120.00051 * 359.86058 * 24 23 22 26 26 C 1.38228 * 120.00066 * 260.00073 * 21 18 17 27 27 H 1.08994 * 109.47309 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47181 * 300.00550 * 1 2 3 29 29 H 1.08998 * 109.46817 * 60.00276 * 1 2 3 30 30 H 0.97000 * 120.00480 * 179.97438 * 7 6 4 31 31 H 1.09007 * 109.46503 * 269.99272 * 13 12 2 32 32 H 1.08999 * 109.47127 * 29.99746 * 13 12 2 33 33 H 1.09000 * 109.47231 * 149.99772 * 13 12 2 34 34 H 1.08994 * 109.47324 * 59.99764 * 16 14 12 35 35 H 1.09004 * 109.47053 * 299.99388 * 16 14 12 36 36 H 1.08995 * 109.46766 * 59.99702 * 17 16 14 37 37 H 1.09001 * 109.46844 * 300.00032 * 17 16 14 38 38 H 1.00901 * 110.99869 * 300.00384 * 20 18 17 39 39 H 1.00896 * 110.99543 * 63.95506 * 20 18 17 40 40 H 1.08000 * 120.00092 * 0.02562 * 22 21 18 41 41 H 1.08001 * 120.00043 * 180.23405 * 23 22 21 42 42 H 1.08005 * 119.99924 * 179.83076 * 24 23 22 43 43 H 1.08010 * 120.00298 * 179.97438 * 25 24 23 44 44 H 1.08000 * 119.99913 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3224 -1.1193 4.0081 9 1 3.8073 -1.1188 4.0079 10 1 1.8268 -0.4196 5.2206 11 1 1.8279 -2.5196 4.0084 12 7 2.0183 -0.6907 -1.1960 13 6 1.6643 -2.0933 -1.4278 14 6 2.7932 -0.0358 -2.0833 15 8 3.0859 1.1255 -1.8916 16 6 3.2951 -0.7461 -3.3139 17 6 4.1458 0.2153 -4.1464 18 6 4.6559 -0.5061 -5.3956 19 1 3.8118 -0.9252 -5.9433 20 7 5.5676 -1.5875 -4.9986 21 6 5.3901 0.4721 -6.2759 22 6 6.6944 0.8230 -5.9815 23 6 7.3692 1.7172 -6.7913 24 6 6.7370 2.2670 -7.8908 25 6 5.4310 1.9202 -8.1822 26 6 4.7575 1.0230 -7.3746 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7081 1.1611 3.4843 31 1 2.4157 -2.7378 -0.9715 32 1 0.6903 -2.3002 -0.9845 33 1 1.6237 -2.2854 -2.5000 34 1 2.4472 -1.0883 -3.9071 35 1 3.9006 -1.6027 -3.0175 36 1 4.9937 0.5571 -3.5529 37 1 3.5408 1.0722 -4.4428 38 1 6.3590 -1.2243 -4.4888 39 1 5.0826 -2.2900 -4.4608 40 1 7.1874 0.3957 -5.1208 41 1 8.3894 1.9885 -6.5634 42 1 7.2633 2.9678 -8.5220 43 1 4.9369 2.3501 -9.0411 44 1 3.7371 0.7520 -7.6023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071401547.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:57 Heat of formation + Delta-G solvation = -20.147866 kcal Electronic energy + Delta-G solvation = -22788.698598 eV Core-core repulsion = 19512.387622 eV Total energy + Delta-G solvation = -3276.310976 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -39.75623 -39.03345 -36.38758 -35.27693 -32.92387 -31.42045 -31.08422 -30.34231 -29.26841 -26.26080 -25.84686 -25.20674 -23.01906 -22.60273 -20.89018 -20.23661 -18.32486 -17.27517 -16.61236 -16.19235 -16.02934 -15.53302 -15.16404 -15.11103 -14.70272 -14.28024 -14.01899 -13.69258 -13.46005 -13.22486 -12.83564 -12.65157 -12.48066 -12.26817 -12.09878 -11.69706 -11.56143 -11.46694 -11.14398 -11.06314 -10.91274 -10.82141 -10.79660 -10.67635 -10.27626 -10.17970 -9.20337 -9.06059 -8.99832 -8.94517 -8.62860 -8.44037 -7.59991 -6.08659 -4.17023 1.26667 1.31924 3.26089 3.31179 3.31920 3.38796 3.66803 3.94429 4.37445 4.42760 4.66597 4.75204 4.87943 4.95944 5.00950 5.08495 5.22032 5.24817 5.36685 5.45050 5.47420 5.55764 5.57209 5.79491 5.90433 5.92647 6.01900 6.11168 6.26694 6.30213 6.35756 6.41284 6.52927 6.74510 6.80343 6.89531 6.99258 7.04197 7.28031 7.42186 7.50948 7.70074 8.00040 8.18455 8.52628 8.81818 9.05207 9.49681 10.96604 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.027256 B = 0.002971 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.052056 B = 9423.705509 C = 9501.302056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.062 0.938 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.594 5.594 13 C 0.087 3.913 14 C 0.501 3.499 15 O -0.554 6.554 16 C -0.139 4.139 17 C -0.132 4.132 18 C 0.129 3.871 19 H 0.089 0.911 20 N -0.841 5.841 21 C -0.065 4.065 22 C -0.105 4.105 23 C -0.120 4.120 24 C -0.127 4.127 25 C -0.120 4.120 26 C -0.115 4.115 27 H 0.030 0.970 28 H 0.093 0.907 29 H 0.011 0.989 30 H 0.264 0.736 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.340 0.660 39 H 0.344 0.656 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.040 -3.621 -18.426 20.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.326 5.326 13 C -0.057 4.057 14 C 0.288 3.712 15 O -0.433 6.433 16 C -0.180 4.180 17 C -0.171 4.171 18 C 0.017 3.983 19 H 0.107 0.893 20 N -0.371 5.371 21 C -0.065 4.065 22 C -0.124 4.124 23 C -0.138 4.138 24 C -0.145 4.145 25 C -0.138 4.138 26 C -0.133 4.133 27 H 0.049 0.951 28 H 0.112 0.888 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.154 0.846 39 H 0.158 0.842 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.171 -3.038 -18.925 20.465 hybrid contribution 0.013 -0.296 1.950 1.973 sum 7.183 -3.334 -16.975 18.731 Atomic orbital electron populations 1.22095 0.98301 0.99324 1.00839 1.18920 0.90825 0.94505 0.80050 0.91981 1.21282 1.31896 1.12966 0.90356 0.92413 1.24900 0.94952 0.94977 0.98973 1.69867 1.36288 1.22600 1.23880 0.86552 0.79235 0.79568 0.82006 1.20254 1.21136 1.20234 1.48256 1.49018 1.11630 1.23661 1.21552 1.01612 0.83274 0.99281 1.20381 0.79248 0.87186 0.84421 1.90653 1.58408 1.17214 1.77012 1.21701 1.00649 0.99545 0.96086 1.22131 1.00606 0.98841 0.95567 1.20420 0.94122 0.89768 0.93983 0.89302 1.59030 1.11945 1.14802 1.51368 1.19746 0.94411 0.96945 0.95437 1.20913 0.94354 0.97531 0.99558 1.21125 0.99899 0.97401 0.95382 1.21116 0.95286 1.00336 0.97795 1.21097 0.94950 0.98129 0.99652 1.21006 0.99858 0.97619 0.94833 0.95117 0.88805 0.97015 0.92611 0.93374 0.90906 0.92959 0.89461 0.89913 0.91024 0.90546 0.84640 0.84205 0.86297 0.86228 0.86366 0.86208 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.95 37.16 0.33 -3.20 16 2 C 0.26 6.60 2.64 -69.09 -0.18 6.41 16 3 H 0.06 1.86 6.90 -51.93 -0.36 1.50 16 4 C -0.53 -14.27 8.37 -34.44 -0.29 -14.56 16 5 H 0.06 1.54 7.65 -52.48 -0.40 1.13 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.26 11.32 55.43 0.63 -24.63 16 8 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.59 -12.50 2.75 -175.26 -0.48 -12.99 16 13 C 0.09 1.41 9.48 59.85 0.57 1.98 16 14 C 0.50 10.11 7.67 -10.98 -0.08 10.02 16 15 O -0.55 -13.60 15.31 5.55 0.09 -13.52 16 16 C -0.14 -1.90 4.02 -27.88 -0.11 -2.01 16 17 C -0.13 -1.73 4.12 -26.73 -0.11 -1.84 16 18 C 0.13 1.36 3.04 -68.86 -0.21 1.15 16 19 H 0.09 0.88 8.00 -51.93 -0.42 0.47 16 20 N -0.84 -8.14 9.01 -5.65 -0.05 -8.19 16 21 C -0.06 -0.73 4.95 -104.62 -0.52 -1.25 16 22 C -0.11 -1.16 9.29 -39.58 -0.37 -1.52 16 23 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 24 C -0.13 -1.22 10.05 -39.59 -0.40 -1.62 16 25 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 26 C -0.11 -1.21 9.67 -39.58 -0.38 -1.60 16 27 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 28 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 29 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.21 6.43 -51.93 -0.33 0.88 16 33 H 0.05 0.65 6.44 -51.93 -0.33 0.31 16 34 H 0.09 1.01 7.40 -51.93 -0.38 0.63 16 35 H 0.08 0.97 6.83 -51.93 -0.35 0.62 16 36 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 37 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 38 H 0.34 3.17 7.35 -39.29 -0.29 2.88 16 39 H 0.34 2.97 7.55 -39.29 -0.30 2.67 16 40 H 0.12 1.18 6.67 -52.49 -0.35 0.83 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 43 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 44 H 0.12 1.08 8.04 -52.49 -0.42 0.66 16 LS Contribution 353.87 15.07 5.33 5.33 Total: -1.00 -32.09 353.87 -8.84 -40.93 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.69 Total: 6.58 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -2.64 Total: -9.55 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.09 Total: -45.81 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.09 Total: -13.52 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.09 -8.84 -40.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071401547.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.781 kcal (2) G-P(sol) polarization free energy of solvation -32.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds