Wall clock time and date at job start Tue Mar 31 2020 08:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46898 * 2 1 4 4 C 1.50700 * 109.46768 * 119.99631 * 2 1 3 5 5 H 1.08003 * 119.99962 * 119.99882 * 4 2 1 6 6 C 1.37876 * 120.00232 * 299.99707 * 4 2 1 7 7 N 1.31513 * 119.99922 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00123 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46972 * 60.00154 * 8 6 4 10 10 H 1.48506 * 109.46992 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47118 * 300.00004 * 8 6 4 12 12 N 1.46494 * 109.47167 * 239.99336 * 2 1 3 13 13 C 1.46501 * 120.00271 * 300.00620 * 12 2 1 14 14 C 1.34783 * 119.99788 * 120.00232 * 12 2 1 15 15 O 1.21285 * 119.99923 * 359.97438 * 14 12 2 16 16 C 1.50698 * 119.99931 * 180.02562 * 14 12 2 17 17 C 1.53004 * 109.47137 * 180.02562 * 16 14 12 18 18 C 1.52998 * 109.47139 * 179.97438 * 17 16 14 19 19 H 1.09001 * 109.47396 * 54.99706 * 18 17 16 20 20 N 1.46905 * 109.47084 * 294.99736 * 18 17 16 21 21 C 1.50700 * 109.47064 * 174.99796 * 18 17 16 22 22 C 1.38240 * 119.99903 * 79.72331 * 21 18 17 23 23 C 1.38232 * 119.99801 * 179.80938 * 22 21 18 24 24 C 1.38236 * 119.99994 * 0.39681 * 23 22 21 25 25 C 1.38227 * 120.00051 * 359.86058 * 24 23 22 26 26 C 1.38228 * 120.00066 * 260.00073 * 21 18 17 27 27 H 1.08994 * 109.47309 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47181 * 300.00550 * 1 2 3 29 29 H 1.08998 * 109.46817 * 60.00276 * 1 2 3 30 30 H 0.97000 * 120.00480 * 179.97438 * 7 6 4 31 31 H 1.09007 * 109.46503 * 269.99272 * 13 12 2 32 32 H 1.08999 * 109.47127 * 29.99746 * 13 12 2 33 33 H 1.09000 * 109.47231 * 149.99772 * 13 12 2 34 34 H 1.08994 * 109.47324 * 59.99764 * 16 14 12 35 35 H 1.09004 * 109.47053 * 299.99388 * 16 14 12 36 36 H 1.08995 * 109.46766 * 59.99702 * 17 16 14 37 37 H 1.09001 * 109.46844 * 300.00032 * 17 16 14 38 38 H 1.00901 * 110.99869 * 300.00384 * 20 18 17 39 39 H 1.00896 * 110.99543 * 63.95506 * 20 18 17 40 40 H 1.08000 * 120.00092 * 0.02562 * 22 21 18 41 41 H 1.08001 * 120.00043 * 180.23405 * 23 22 21 42 42 H 1.08005 * 119.99924 * 179.83076 * 24 23 22 43 43 H 1.08010 * 120.00298 * 179.97438 * 25 24 23 44 44 H 1.08000 * 119.99913 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3224 -1.1193 4.0081 9 1 3.8073 -1.1188 4.0079 10 1 1.8268 -0.4196 5.2206 11 1 1.8279 -2.5196 4.0084 12 7 2.0183 -0.6907 -1.1960 13 6 1.6643 -2.0933 -1.4278 14 6 2.7932 -0.0358 -2.0833 15 8 3.0859 1.1255 -1.8916 16 6 3.2951 -0.7461 -3.3139 17 6 4.1458 0.2153 -4.1464 18 6 4.6559 -0.5061 -5.3956 19 1 3.8118 -0.9252 -5.9433 20 7 5.5676 -1.5875 -4.9986 21 6 5.3901 0.4721 -6.2759 22 6 6.6944 0.8230 -5.9815 23 6 7.3692 1.7172 -6.7913 24 6 6.7370 2.2670 -7.8908 25 6 5.4310 1.9202 -8.1822 26 6 4.7575 1.0230 -7.3746 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7081 1.1611 3.4843 31 1 2.4157 -2.7378 -0.9715 32 1 0.6903 -2.3002 -0.9845 33 1 1.6237 -2.2854 -2.5000 34 1 2.4472 -1.0883 -3.9071 35 1 3.9006 -1.6027 -3.0175 36 1 4.9937 0.5571 -3.5529 37 1 3.5408 1.0722 -4.4428 38 1 6.3590 -1.2243 -4.4888 39 1 5.0826 -2.2900 -4.4608 40 1 7.1874 0.3957 -5.1208 41 1 8.3894 1.9885 -6.5634 42 1 7.2633 2.9678 -8.5220 43 1 4.9369 2.3501 -9.0411 44 1 3.7371 0.7520 -7.6023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071401547.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:55 Heat of formation + Delta-G solvation = -40.516199 kcal Electronic energy + Delta-G solvation = -22789.581835 eV Core-core repulsion = 19512.387622 eV Total energy + Delta-G solvation = -3277.194213 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -40.92791 -40.22882 -37.49127 -36.88460 -34.83205 -32.68279 -31.83085 -31.22692 -30.89929 -27.62599 -27.33622 -26.91594 -24.11412 -23.41015 -22.43041 -21.16422 -19.88459 -18.55921 -18.10406 -17.77582 -17.09620 -16.91171 -16.59331 -16.11382 -15.87873 -15.48453 -15.08366 -14.87258 -14.65873 -14.40714 -14.16459 -13.90343 -13.71171 -13.47848 -13.41416 -13.22818 -12.93734 -12.82337 -12.73554 -12.62596 -12.51799 -12.19341 -12.14185 -12.01421 -11.76371 -11.66401 -11.20635 -10.67262 -10.48313 -9.82589 -9.75785 -9.44269 -9.32137 -8.16273 -6.33570 0.49528 0.55683 1.39730 1.42111 1.49625 1.82452 2.31525 2.49877 2.92425 3.11295 3.60979 3.69935 3.80831 3.97861 4.12213 4.17683 4.25984 4.34369 4.37544 4.45819 4.53093 4.64847 4.69405 4.70189 4.77765 4.82845 4.86304 5.02161 5.06058 5.07549 5.15829 5.19542 5.26013 5.44566 5.60566 5.62013 5.66354 5.66643 5.74606 6.02697 6.14785 6.16201 6.21861 6.58663 6.74919 6.85655 7.31566 7.49791 8.87820 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.027256 B = 0.002971 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.052056 B = 9423.705509 C = 9501.302056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.260 3.740 3 H 0.004 0.996 4 C -0.540 4.540 5 H 0.061 0.939 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.261 1.261 12 N -0.603 5.603 13 C 0.081 3.919 14 C 0.488 3.512 15 O -0.611 6.611 16 C -0.123 4.123 17 C -0.122 4.122 18 C 0.143 3.857 19 H 0.104 0.896 20 N -0.839 5.839 21 C -0.085 4.085 22 C -0.123 4.123 23 C -0.132 4.132 24 C -0.134 4.134 25 C -0.128 4.128 26 C -0.128 4.128 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.019 0.981 30 H 0.264 0.736 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.341 0.659 39 H 0.352 0.648 40 H 0.122 0.878 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.404 -5.972 -19.853 22.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.158 3.842 3 H 0.022 0.978 4 C -0.578 4.578 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.185 1.185 12 N -0.333 5.333 13 C -0.061 4.061 14 C 0.277 3.723 15 O -0.494 6.494 16 C -0.162 4.162 17 C -0.162 4.162 18 C 0.031 3.969 19 H 0.122 0.878 20 N -0.371 5.371 21 C -0.085 4.085 22 C -0.141 4.141 23 C -0.150 4.150 24 C -0.152 4.152 25 C -0.146 4.146 26 C -0.146 4.146 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.139 0.861 35 H 0.129 0.871 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.155 0.845 39 H 0.167 0.833 40 H 0.140 0.860 41 H 0.153 0.847 42 H 0.158 0.842 43 H 0.159 0.841 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.530 -5.444 -20.377 22.395 hybrid contribution -0.073 0.501 2.348 2.402 sum 7.457 -4.943 -18.028 20.126 Atomic orbital electron populations 1.21878 0.97237 1.00158 0.99869 1.18493 0.91601 0.92080 0.82069 0.97800 1.21566 1.31959 1.13064 0.91210 0.92094 1.25772 0.95076 0.95643 1.02139 1.70021 1.37319 1.23960 1.24501 0.85504 0.78404 0.79033 0.78049 1.20245 1.20946 1.18550 1.48282 1.49107 1.13519 1.22385 1.21845 1.01453 0.80208 1.02560 1.21567 0.78172 0.86794 0.85729 1.90626 1.60246 1.20026 1.78453 1.21690 1.02060 0.99480 0.92982 1.22052 0.99298 0.98430 0.96469 1.20280 0.94557 0.89549 0.92486 0.87826 1.59031 1.11851 1.14524 1.51651 1.19933 0.94763 0.97685 0.96118 1.21119 0.94750 0.98194 1.00079 1.21419 1.00800 0.97267 0.95528 1.21459 0.95515 1.00401 0.97816 1.21435 0.95174 0.97823 1.00174 1.21290 1.00659 0.97822 0.94865 0.93191 0.91532 0.96193 0.92642 0.92538 0.91403 0.88191 0.86058 0.87066 0.93386 0.92736 0.84487 0.83273 0.85995 0.84697 0.84239 0.84119 0.84736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.47 8.95 71.98 0.64 -5.83 16 2 C 0.26 13.69 2.64 44.25 0.12 13.80 16 3 H 0.00 0.26 6.90 -2.39 -0.02 0.24 16 4 C -0.54 -29.55 8.37 25.60 0.21 -29.33 16 5 H 0.06 3.21 7.65 -2.91 -0.02 3.19 16 6 C 0.01 0.73 5.30 84.65 0.45 1.17 16 7 N -0.92 -53.68 11.32 21.45 0.24 -53.43 16 8 Si 0.97 43.16 29.54 68.60 2.03 45.19 16 9 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 12 N -0.60 -25.05 2.75 -826.79 -2.28 -27.32 16 13 C 0.08 2.41 9.48 127.77 1.21 3.62 16 14 C 0.49 19.66 7.67 87.66 0.67 20.33 16 15 O -0.61 -31.41 15.31 -3.04 -0.05 -31.45 16 16 C -0.12 -3.05 4.02 29.85 0.12 -2.93 16 17 C -0.12 -3.13 4.12 30.59 0.13 -3.01 16 18 C 0.14 2.77 3.04 44.17 0.13 2.90 16 19 H 0.10 1.73 8.00 -2.39 -0.02 1.71 16 20 N -0.84 -14.34 9.01 -171.79 -1.55 -15.89 16 21 C -0.08 -1.82 4.95 -19.87 -0.10 -1.92 16 22 C -0.12 -2.65 9.29 22.27 0.21 -2.44 16 23 C -0.13 -2.56 10.05 22.27 0.22 -2.34 16 24 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 25 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 26 C -0.13 -2.54 9.67 22.27 0.22 -2.32 16 27 H 0.05 2.18 6.66 -2.39 -0.02 2.16 16 28 H 0.07 3.61 6.07 -2.39 -0.01 3.60 16 29 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 31 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.07 2.08 6.43 -2.39 -0.02 2.06 16 33 H 0.10 1.99 6.44 -2.39 -0.02 1.97 16 34 H 0.12 2.27 7.40 -2.39 -0.02 2.25 16 35 H 0.11 2.19 6.83 -2.39 -0.02 2.17 16 36 H 0.05 1.44 8.10 -2.39 -0.02 1.42 16 37 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 38 H 0.34 5.85 7.35 -89.69 -0.66 5.19 16 39 H 0.35 4.90 7.55 -89.70 -0.68 4.23 16 40 H 0.12 2.40 6.67 -2.91 -0.02 2.38 16 41 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 42 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 43 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 44 H 0.13 2.17 8.04 -2.91 -0.02 2.14 16 Total: -1.00 -73.59 353.87 2.75 -70.84 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: -0.33 Total: 24.59 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 4.68 Total: -12.52 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -3.58 Total: -96.64 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -0.05 Total: -31.45 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -73.59 2.75 -70.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071401547.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.324 kcal (2) G-P(sol) polarization free energy of solvation -73.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds