Wall clock time and date at job start Tue Mar 31 2020 08:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47193 * 2 1 4 4 C 1.50696 * 109.47106 * 240.00066 * 2 1 3 5 5 H 1.08006 * 120.00263 * 245.62402 * 4 2 1 6 6 C 1.37875 * 120.00299 * 65.61831 * 4 2 1 7 7 N 1.31511 * 120.00157 * 196.97108 * 6 4 2 8 8 Si 1.86798 * 119.99893 * 17.24348 * 6 4 2 9 9 H 1.48496 * 109.47439 * 179.72791 * 8 6 4 10 10 H 1.48507 * 109.47069 * 299.72536 * 8 6 4 11 11 H 1.48497 * 109.47361 * 59.72470 * 8 6 4 12 12 N 1.46504 * 109.47160 * 119.99809 * 2 1 3 13 13 C 1.46504 * 119.99520 * 60.00191 * 12 2 1 14 14 C 1.34773 * 119.99967 * 239.99712 * 12 2 1 15 15 O 1.21276 * 120.00208 * 0.02562 * 14 12 2 16 16 C 1.50697 * 119.99611 * 179.97438 * 14 12 2 17 17 C 1.53003 * 109.47059 * 180.02562 * 16 14 12 18 18 C 1.52996 * 109.47212 * 180.02562 * 17 16 14 19 19 H 1.09007 * 109.47279 * 304.99469 * 18 17 16 20 20 N 1.46902 * 109.47607 * 64.99943 * 18 17 16 21 21 C 1.50704 * 109.47034 * 184.99821 * 18 17 16 22 22 C 1.38235 * 120.00175 * 279.72557 * 21 18 17 23 23 C 1.38228 * 120.00191 * 179.78917 * 22 21 18 24 24 C 1.38238 * 120.00097 * 0.43958 * 23 22 21 25 25 C 1.38241 * 119.99846 * 359.81496 * 24 23 22 26 26 C 1.38232 * 119.99693 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.47120 * 305.88392 * 1 2 3 28 28 H 1.08996 * 109.47559 * 65.88235 * 1 2 3 29 29 H 1.08995 * 109.47228 * 185.88417 * 1 2 3 30 30 H 0.96996 * 120.00531 * 355.07916 * 7 6 4 31 31 H 1.08999 * 109.47383 * 90.00059 * 13 12 2 32 32 H 1.09000 * 109.46583 * 210.00076 * 13 12 2 33 33 H 1.08995 * 109.47202 * 329.99662 * 13 12 2 34 34 H 1.09003 * 109.47647 * 300.00130 * 16 14 12 35 35 H 1.09000 * 109.47342 * 60.00595 * 16 14 12 36 36 H 1.09000 * 109.46813 * 299.99811 * 17 16 14 37 37 H 1.08998 * 109.47365 * 59.99615 * 17 16 14 38 38 H 1.00897 * 110.99686 * 59.99598 * 20 18 17 39 39 H 1.00893 * 110.99892 * 183.95636 * 20 18 17 40 40 H 1.08001 * 119.99818 * 359.97438 * 22 21 18 41 41 H 1.08001 * 120.00151 * 180.26955 * 23 22 21 42 42 H 1.07994 * 120.00373 * 179.83279 * 24 23 22 43 43 H 1.07997 * 119.99967 * 180.02562 * 25 24 23 44 44 H 1.08002 * 120.00155 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7974 -0.1757 -2.4794 7 7 1.9263 -0.9269 -3.5511 8 14 1.3034 1.6177 -2.6498 9 1 1.1172 1.9456 -4.0860 10 1 0.0317 1.8524 -1.9196 11 1 2.3684 2.4809 -2.0790 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2950 -0.7458 3.3140 17 6 4.1447 0.2159 4.1471 18 6 4.6547 -0.5053 5.3963 19 1 3.8106 -0.9250 5.9436 20 7 5.5672 -1.5860 4.9996 21 6 5.3880 0.4733 6.2772 22 6 6.6959 0.8163 5.9899 23 6 7.3670 1.7172 6.7953 24 6 6.7333 2.2682 7.8933 25 6 5.4270 1.9212 8.1837 26 6 4.7545 1.0236 7.3757 27 1 -0.3633 0.6023 0.8326 28 1 -0.3634 0.4199 -0.9379 29 1 -0.3633 -1.0222 0.1053 30 1 2.2553 -1.8357 -3.4698 31 1 2.4157 -2.7377 0.9717 32 1 1.6237 -2.2852 2.5002 33 1 0.6904 -2.3002 0.9847 34 1 2.4470 -1.0880 3.9073 35 1 3.9004 -1.6025 3.0178 36 1 4.9927 0.5584 3.5541 37 1 3.5391 1.0724 4.4434 38 1 6.3586 -1.2223 4.4903 39 1 5.8675 -2.1186 5.8022 40 1 7.1924 0.3827 5.1344 41 1 8.3875 1.9885 6.5683 42 1 7.2585 2.9700 8.5242 43 1 4.9317 2.3520 9.0413 44 1 3.7338 0.7527 7.6023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071401550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:12 Heat of formation + Delta-G solvation = -19.397739 kcal Electronic energy + Delta-G solvation = -22843.447014 eV Core-core repulsion = 19567.168567 eV Total energy + Delta-G solvation = -3276.278448 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.86560 -39.08863 -36.31313 -35.33835 -32.84420 -31.65886 -31.20704 -30.33038 -29.90642 -26.27459 -25.90979 -24.65840 -23.08827 -22.65553 -20.79718 -20.18887 -18.17996 -17.46828 -17.23959 -16.57529 -16.12552 -15.60869 -15.19907 -15.02812 -14.96618 -14.19353 -13.88668 -13.63226 -13.42039 -13.22606 -13.03467 -12.73465 -12.60573 -12.22734 -12.06309 -11.85923 -11.63187 -11.50057 -11.33771 -11.24131 -11.22797 -11.03145 -10.69861 -10.43535 -9.92198 -9.72122 -9.21292 -9.13638 -9.06019 -8.91608 -8.77951 -8.28365 -7.68248 -6.45049 -4.09315 1.09587 1.15383 3.39567 3.40735 3.51106 3.52064 3.64184 3.94118 4.39109 4.48711 4.51942 4.62883 4.74973 4.86550 4.98508 5.09938 5.23663 5.25859 5.31679 5.43685 5.53496 5.56525 5.71721 5.77670 5.79724 5.95356 6.04433 6.21041 6.21873 6.26157 6.26886 6.35068 6.39311 6.43066 6.47516 6.65607 6.75293 6.94174 7.00967 7.21939 7.24506 7.52336 7.91535 8.34475 8.43729 8.83950 9.05078 9.59091 10.92338 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.025776 B = 0.003165 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.005439 B = 8844.862327 C = 9135.312345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.232 3.768 3 H 0.054 0.946 4 C -0.608 4.608 5 H 0.060 0.940 6 C 0.035 3.965 7 N -0.904 5.904 8 Si 1.041 2.959 9 H -0.284 1.284 10 H -0.273 1.273 11 H -0.279 1.279 12 N -0.590 5.590 13 C 0.090 3.910 14 C 0.501 3.499 15 O -0.560 6.560 16 C -0.129 4.129 17 C -0.088 4.088 18 C 0.129 3.871 19 H 0.089 0.911 20 N -0.835 5.835 21 C -0.113 4.113 22 C -0.117 4.117 23 C -0.117 4.117 24 C -0.126 4.126 25 C -0.119 4.119 26 C -0.112 4.112 27 H 0.025 0.975 28 H 0.065 0.935 29 H 0.047 0.953 30 H 0.267 0.733 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.341 0.659 39 H 0.340 0.660 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.257 0.296 23.409 24.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.130 3.870 3 H 0.071 0.929 4 C -0.646 4.646 5 H 0.078 0.922 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.869 3.131 9 H -0.210 1.210 10 H -0.200 1.200 11 H -0.205 1.205 12 N -0.321 5.321 13 C -0.054 4.054 14 C 0.288 3.712 15 O -0.440 6.440 16 C -0.169 4.169 17 C -0.126 4.126 18 C 0.018 3.982 19 H 0.107 0.893 20 N -0.364 5.364 21 C -0.115 4.115 22 C -0.136 4.136 23 C -0.135 4.135 24 C -0.144 4.144 25 C -0.137 4.137 26 C -0.131 4.131 27 H 0.044 0.956 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.314 1.731 21.716 22.424 hybrid contribution 1.226 -0.833 1.694 2.251 sum 6.540 0.897 23.410 24.323 Atomic orbital electron populations 1.22515 0.98868 1.00238 1.00295 1.19159 0.90275 0.94743 0.82786 0.92859 1.22188 1.40895 1.10430 0.91109 0.92202 1.25680 0.94616 1.04907 0.91885 1.70872 1.41593 1.09992 1.31290 0.84106 0.77446 0.75502 0.76040 1.21009 1.19980 1.20508 1.47961 1.49306 1.11717 1.23088 1.21541 1.01439 0.82924 0.99494 1.20633 0.78777 0.87087 0.84654 1.90623 1.58555 1.17439 1.77365 1.21575 1.00373 1.00029 0.94908 1.21318 1.00042 0.97286 0.93989 1.20557 0.94791 0.88678 0.94208 0.89299 1.58982 1.22964 1.25623 1.28840 1.20925 0.94935 0.99191 0.96468 1.20973 0.94598 0.98468 0.99528 1.21137 0.99981 0.97130 0.95268 1.21156 0.95285 1.00191 0.97753 1.21168 0.94936 0.97916 0.99694 1.21081 0.99807 0.97355 0.94869 0.95580 0.91669 0.93407 0.92285 0.93243 0.92583 0.91125 0.89952 0.88251 0.91194 0.90951 0.84469 0.84727 0.86241 0.86115 0.86234 0.86128 0.85981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.59 8.96 37.16 0.33 -3.26 16 2 C 0.23 5.80 2.22 -69.08 -0.15 5.65 16 3 H 0.05 1.46 5.56 -51.93 -0.29 1.17 16 4 C -0.61 -17.19 8.68 -34.44 -0.30 -17.49 16 5 H 0.06 1.80 7.75 -52.48 -0.41 1.40 16 6 C 0.03 1.01 5.30 -17.82 -0.09 0.91 16 7 N -0.90 -27.71 13.70 55.43 0.76 -26.95 16 8 Si 1.04 25.93 26.29 -169.99 -4.47 21.47 16 9 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.27 -6.25 5.74 56.52 0.32 -5.93 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 N -0.59 -12.63 2.75 -175.26 -0.48 -13.11 16 13 C 0.09 1.54 9.43 59.85 0.56 2.11 16 14 C 0.50 10.26 7.67 -10.99 -0.08 10.18 16 15 O -0.56 -13.60 15.31 5.56 0.09 -13.51 16 16 C -0.13 -1.89 4.14 -27.88 -0.12 -2.00 16 17 C -0.09 -1.18 4.13 -26.73 -0.11 -1.29 16 18 C 0.13 1.31 2.99 -68.86 -0.21 1.10 16 19 H 0.09 0.84 8.00 -51.92 -0.42 0.42 16 20 N -0.84 -7.65 8.51 -5.65 -0.05 -7.70 16 21 C -0.11 -1.14 4.95 -104.62 -0.52 -1.66 16 22 C -0.12 -1.15 9.30 -39.59 -0.37 -1.52 16 23 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 24 C -0.13 -1.10 10.05 -39.58 -0.40 -1.50 16 25 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 26 C -0.11 -1.07 9.67 -39.58 -0.38 -1.46 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 1.50 4.85 -51.93 -0.25 1.25 16 29 H 0.05 0.99 6.45 -51.93 -0.33 0.66 16 30 H 0.27 8.13 8.73 -40.82 -0.36 7.77 16 31 H 0.05 0.86 8.09 -51.93 -0.42 0.44 16 32 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 33 H 0.07 1.22 6.33 -51.93 -0.33 0.89 16 34 H 0.08 1.03 7.40 -51.93 -0.38 0.64 16 35 H 0.10 1.42 7.72 -51.93 -0.40 1.02 16 36 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 37 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 38 H 0.34 3.05 7.34 -39.29 -0.29 2.76 16 39 H 0.34 2.57 9.06 -39.30 -0.36 2.22 16 40 H 0.12 1.05 6.65 -52.49 -0.35 0.70 16 41 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.12 0.98 8.04 -52.49 -0.42 0.56 16 LS Contribution 350.97 15.07 5.29 5.29 Total: -1.00 -33.60 350.97 -8.23 -41.83 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -6.74 Total: 5.83 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -2.63 Total: -13.15 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.23 Total: -47.76 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.09 Total: -13.51 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -4.47 Total: 21.47 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.60 -8.23 -41.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071401550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.437 kcal (2) G-P(sol) polarization free energy of solvation -33.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds