Wall clock time and date at job start Tue Mar 31 2020 08:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47193 * 2 1 4 4 C 1.50696 * 109.47106 * 240.00066 * 2 1 3 5 5 H 1.08006 * 120.00263 * 245.62402 * 4 2 1 6 6 C 1.37875 * 120.00299 * 65.61831 * 4 2 1 7 7 N 1.31511 * 120.00157 * 196.97108 * 6 4 2 8 8 Si 1.86798 * 119.99893 * 17.24348 * 6 4 2 9 9 H 1.48496 * 109.47439 * 179.72791 * 8 6 4 10 10 H 1.48507 * 109.47069 * 299.72536 * 8 6 4 11 11 H 1.48497 * 109.47361 * 59.72470 * 8 6 4 12 12 N 1.46504 * 109.47160 * 119.99809 * 2 1 3 13 13 C 1.46504 * 119.99520 * 60.00191 * 12 2 1 14 14 C 1.34773 * 119.99967 * 239.99712 * 12 2 1 15 15 O 1.21276 * 120.00208 * 0.02562 * 14 12 2 16 16 C 1.50697 * 119.99611 * 179.97438 * 14 12 2 17 17 C 1.53003 * 109.47059 * 180.02562 * 16 14 12 18 18 C 1.52996 * 109.47212 * 180.02562 * 17 16 14 19 19 H 1.09007 * 109.47279 * 304.99469 * 18 17 16 20 20 N 1.46902 * 109.47607 * 64.99943 * 18 17 16 21 21 C 1.50704 * 109.47034 * 184.99821 * 18 17 16 22 22 C 1.38235 * 120.00175 * 279.72557 * 21 18 17 23 23 C 1.38228 * 120.00191 * 179.78917 * 22 21 18 24 24 C 1.38238 * 120.00097 * 0.43958 * 23 22 21 25 25 C 1.38241 * 119.99846 * 359.81496 * 24 23 22 26 26 C 1.38232 * 119.99693 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.47120 * 305.88392 * 1 2 3 28 28 H 1.08996 * 109.47559 * 65.88235 * 1 2 3 29 29 H 1.08995 * 109.47228 * 185.88417 * 1 2 3 30 30 H 0.96996 * 120.00531 * 355.07916 * 7 6 4 31 31 H 1.08999 * 109.47383 * 90.00059 * 13 12 2 32 32 H 1.09000 * 109.46583 * 210.00076 * 13 12 2 33 33 H 1.08995 * 109.47202 * 329.99662 * 13 12 2 34 34 H 1.09003 * 109.47647 * 300.00130 * 16 14 12 35 35 H 1.09000 * 109.47342 * 60.00595 * 16 14 12 36 36 H 1.09000 * 109.46813 * 299.99811 * 17 16 14 37 37 H 1.08998 * 109.47365 * 59.99615 * 17 16 14 38 38 H 1.00897 * 110.99686 * 59.99598 * 20 18 17 39 39 H 1.00893 * 110.99892 * 183.95636 * 20 18 17 40 40 H 1.08001 * 119.99818 * 359.97438 * 22 21 18 41 41 H 1.08001 * 120.00151 * 180.26955 * 23 22 21 42 42 H 1.07994 * 120.00373 * 179.83279 * 24 23 22 43 43 H 1.07997 * 119.99967 * 180.02562 * 25 24 23 44 44 H 1.08002 * 120.00155 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7974 -0.1757 -2.4794 7 7 1.9263 -0.9269 -3.5511 8 14 1.3034 1.6177 -2.6498 9 1 1.1172 1.9456 -4.0860 10 1 0.0317 1.8524 -1.9196 11 1 2.3684 2.4809 -2.0790 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2950 -0.7458 3.3140 17 6 4.1447 0.2159 4.1471 18 6 4.6547 -0.5053 5.3963 19 1 3.8106 -0.9250 5.9436 20 7 5.5672 -1.5860 4.9996 21 6 5.3880 0.4733 6.2772 22 6 6.6959 0.8163 5.9899 23 6 7.3670 1.7172 6.7953 24 6 6.7333 2.2682 7.8933 25 6 5.4270 1.9212 8.1837 26 6 4.7545 1.0236 7.3757 27 1 -0.3633 0.6023 0.8326 28 1 -0.3634 0.4199 -0.9379 29 1 -0.3633 -1.0222 0.1053 30 1 2.2553 -1.8357 -3.4698 31 1 2.4157 -2.7377 0.9717 32 1 1.6237 -2.2852 2.5002 33 1 0.6904 -2.3002 0.9847 34 1 2.4470 -1.0880 3.9073 35 1 3.9004 -1.6025 3.0178 36 1 4.9927 0.5584 3.5541 37 1 3.5391 1.0724 4.4434 38 1 6.3586 -1.2223 4.4903 39 1 5.8675 -2.1186 5.8022 40 1 7.1924 0.3827 5.1344 41 1 8.3875 1.9885 6.5683 42 1 7.2585 2.9700 8.5242 43 1 4.9317 2.3520 9.0413 44 1 3.7338 0.7527 7.6023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071401550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:11 Heat of formation + Delta-G solvation = -41.893618 kcal Electronic energy + Delta-G solvation = -22844.422509 eV Core-core repulsion = 19567.168567 eV Total energy + Delta-G solvation = -3277.253942 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.94700 -40.33647 -37.46839 -36.84086 -34.86512 -33.03703 -31.90753 -31.56476 -30.99753 -27.71922 -27.09728 -26.65478 -24.08436 -23.41041 -22.28734 -21.17441 -19.89243 -19.52126 -18.08705 -17.86006 -17.23940 -16.91807 -16.49859 -16.10429 -15.74983 -15.62384 -15.22505 -14.80074 -14.66356 -14.50104 -14.27422 -14.03185 -13.98362 -13.70137 -13.39750 -13.37723 -13.15690 -12.98035 -12.73591 -12.40387 -12.24560 -12.09013 -11.97247 -11.84104 -11.71255 -11.65032 -11.17801 -10.63005 -10.48699 -9.91161 -9.82155 -9.49578 -9.48240 -8.72231 -6.40914 0.40204 0.47335 1.40300 1.50044 1.67971 1.80675 2.36264 2.40664 2.84598 3.02263 3.62376 3.67161 3.81244 3.95507 4.12624 4.17036 4.23581 4.32002 4.34983 4.48797 4.54263 4.55944 4.63437 4.65475 4.71159 4.72932 4.79015 4.82939 4.97815 5.07928 5.11088 5.14279 5.19327 5.28123 5.42203 5.54448 5.59992 5.63062 5.73139 5.82458 6.01537 6.09609 6.20712 6.55280 6.58813 6.77083 7.29739 7.43796 8.60335 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.025776 B = 0.003165 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.005439 B = 8844.862327 C = 9135.312345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.230 3.770 3 H 0.028 0.972 4 C -0.605 4.605 5 H 0.029 0.971 6 C -0.011 4.011 7 N -0.932 5.932 8 Si 1.074 2.926 9 H -0.281 1.281 10 H -0.238 1.238 11 H -0.283 1.283 12 N -0.601 5.601 13 C 0.087 3.913 14 C 0.490 3.510 15 O -0.605 6.605 16 C -0.113 4.113 17 C -0.082 4.082 18 C 0.143 3.857 19 H 0.104 0.896 20 N -0.837 5.837 21 C -0.126 4.126 22 C -0.132 4.132 23 C -0.130 4.130 24 C -0.132 4.132 25 C -0.127 4.127 26 C -0.124 4.124 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.255 0.745 31 H 0.040 0.960 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.045 0.955 37 H 0.059 0.941 38 H 0.341 0.659 39 H 0.351 0.649 40 H 0.122 0.878 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.436 0.308 26.086 26.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.127 3.873 3 H 0.046 0.954 4 C -0.644 4.644 5 H 0.048 0.952 6 C -0.211 4.211 7 N -0.567 5.567 8 Si 0.897 3.103 9 H -0.206 1.206 10 H -0.162 1.162 11 H -0.210 1.210 12 N -0.331 5.331 13 C -0.055 4.055 14 C 0.281 3.719 15 O -0.488 6.488 16 C -0.152 4.152 17 C -0.120 4.120 18 C 0.031 3.969 19 H 0.122 0.878 20 N -0.367 5.367 21 C -0.128 4.128 22 C -0.150 4.150 23 C -0.148 4.148 24 C -0.150 4.150 25 C -0.145 4.145 26 C -0.142 4.142 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.155 0.845 39 H 0.165 0.835 40 H 0.140 0.860 41 H 0.153 0.847 42 H 0.157 0.843 43 H 0.159 0.841 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.485 1.692 24.431 24.897 hybrid contribution 1.583 -0.877 0.910 2.025 sum 6.068 0.816 25.341 26.070 Atomic orbital electron populations 1.22347 0.96386 1.01568 1.00753 1.18909 0.92088 0.93243 0.83076 0.95438 1.22359 1.39860 1.09237 0.92905 0.95223 1.26879 0.94551 1.07795 0.91833 1.70981 1.43825 1.09735 1.32209 0.83686 0.78754 0.71313 0.76593 1.20649 1.16216 1.20963 1.48069 1.49586 1.13295 1.22126 1.21758 1.00903 0.80294 1.02554 1.21695 0.77648 0.86793 0.85800 1.90596 1.59942 1.19705 1.78566 1.21561 1.01596 0.99605 0.92452 1.21230 0.98772 0.97038 0.94966 1.20362 0.95424 0.88637 0.92473 0.87791 1.58970 1.23030 1.25316 1.29416 1.20972 0.95132 0.99723 0.96974 1.21151 0.94948 0.98992 0.99952 1.21413 1.00829 0.97069 0.95448 1.21485 0.95533 1.00256 0.97766 1.21489 0.95124 0.97668 1.00218 1.21346 1.00584 0.97447 0.94828 0.93329 0.92543 0.92076 0.93599 0.94144 0.87855 0.91231 0.86560 0.87359 0.93650 0.92260 0.84486 0.83480 0.85988 0.84747 0.84265 0.84132 0.84603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.50 8.96 71.98 0.64 -5.85 16 2 C 0.23 11.41 2.22 44.24 0.10 11.51 16 3 H 0.03 1.52 5.56 -2.39 -0.01 1.51 16 4 C -0.61 -34.78 8.68 25.60 0.22 -34.56 16 5 H 0.03 1.84 7.75 -2.91 -0.02 1.81 16 6 C -0.01 -0.65 5.30 84.65 0.45 -0.20 16 7 N -0.93 -58.38 13.70 21.45 0.29 -58.09 16 8 Si 1.07 52.34 26.29 68.60 1.80 54.14 16 9 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 10 H -0.24 -10.19 5.74 99.48 0.57 -9.62 16 11 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 12 N -0.60 -25.06 2.75 -826.80 -2.28 -27.34 16 13 C 0.09 2.81 9.43 127.77 1.20 4.01 16 14 C 0.49 19.67 7.67 87.66 0.67 20.34 16 15 O -0.61 -29.67 15.31 -3.02 -0.05 -29.72 16 16 C -0.11 -3.04 4.14 29.85 0.12 -2.91 16 17 C -0.08 -2.10 4.13 30.59 0.13 -1.97 16 18 C 0.14 2.60 2.99 44.17 0.13 2.73 16 19 H 0.10 1.61 8.00 -2.38 -0.02 1.59 16 20 N -0.84 -13.72 8.51 -171.79 -1.46 -15.18 16 21 C -0.13 -2.37 4.95 -19.86 -0.10 -2.46 16 22 C -0.13 -2.49 9.30 22.27 0.21 -2.29 16 23 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 24 C -0.13 -2.09 10.05 22.27 0.22 -1.86 16 25 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 26 C -0.12 -2.13 9.67 22.27 0.22 -1.91 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 28 H 0.06 2.48 4.85 -2.39 -0.01 2.47 16 29 H 0.06 2.41 6.45 -2.39 -0.02 2.39 16 30 H 0.25 16.07 8.73 -92.71 -0.81 15.26 16 31 H 0.04 1.37 8.09 -2.39 -0.02 1.35 16 32 H 0.10 2.32 6.44 -2.39 -0.02 2.31 16 33 H 0.07 2.25 6.33 -2.39 -0.02 2.23 16 34 H 0.12 2.39 7.40 -2.39 -0.02 2.37 16 35 H 0.11 2.80 7.72 -2.39 -0.02 2.79 16 36 H 0.04 1.38 8.10 -2.39 -0.02 1.36 16 37 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 38 H 0.34 5.72 7.34 -89.70 -0.66 5.06 16 39 H 0.35 4.54 9.06 -89.70 -0.81 3.73 16 40 H 0.12 2.12 6.65 -2.91 -0.02 2.10 16 41 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 42 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 43 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 44 H 0.14 1.86 8.04 -2.91 -0.02 1.83 16 Total: -1.00 -74.84 350.97 2.35 -72.50 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -0.63 Total: 22.90 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: 4.67 Total: -19.21 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -3.44 Total: -100.61 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.05 Total: -29.72 kcal Atomic # 14 Polarization: 52.34 SS G_CDS: 1.80 Total: 54.14 kcal Total: -74.84 2.35 -72.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071401550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.604 kcal (2) G-P(sol) polarization free energy of solvation -74.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds