Wall clock time and date at job start Tue Mar 31 2020 08:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46509 * 2 1 4 4 C 1.50700 * 109.46959 * 240.00719 * 2 1 3 5 5 O 1.21279 * 119.99982 * 269.28683 * 4 2 1 6 6 N 1.34773 * 120.00146 * 89.29610 * 4 2 1 7 7 C 1.46502 * 119.99960 * 354.90342 * 6 4 2 8 8 C 1.46498 * 120.00083 * 174.90194 * 6 4 2 9 9 C 1.50703 * 109.46906 * 89.99923 * 8 6 4 10 10 H 1.07997 * 120.00363 * 0.02562 * 9 8 6 11 11 C 1.37885 * 120.00088 * 180.02562 * 9 8 6 12 12 N 1.31518 * 119.99794 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00040 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47214 * 59.99707 * 13 11 9 15 15 H 1.48498 * 109.46968 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46910 * 299.99597 * 13 11 9 17 17 N 1.46894 * 109.47329 * 120.00385 * 2 1 3 18 18 C 1.46897 * 110.99961 * 178.95164 * 17 2 1 19 19 C 1.46902 * 111.00130 * 302.90078 * 17 2 1 20 20 C 1.50693 * 109.47305 * 169.99885 * 19 17 2 21 21 C 1.38235 * 120.00550 * 269.72941 * 20 19 17 22 22 C 1.38232 * 120.00334 * 179.76566 * 21 20 19 23 23 C 1.38237 * 120.00102 * 0.50726 * 22 21 20 24 24 C 1.38234 * 119.99435 * 359.74571 * 23 22 21 25 25 C 1.38232 * 120.00421 * 0.02562 * 24 23 22 26 26 H 1.08991 * 109.47355 * 307.93598 * 1 2 3 27 27 H 1.08996 * 109.47538 * 67.94368 * 1 2 3 28 28 H 1.09001 * 109.46597 * 187.93886 * 1 2 3 29 29 H 1.09000 * 109.47534 * 91.41104 * 7 6 4 30 30 H 1.09003 * 109.47131 * 211.41003 * 7 6 4 31 31 H 1.09000 * 109.47046 * 331.40814 * 7 6 4 32 32 H 1.08998 * 109.47513 * 209.99802 * 8 6 4 33 33 H 1.08999 * 109.47214 * 330.00037 * 8 6 4 34 34 H 0.96999 * 120.00192 * 180.02562 * 12 11 9 35 35 H 1.08990 * 109.47593 * 65.83912 * 18 17 2 36 36 H 1.09004 * 109.47104 * 185.84249 * 18 17 2 37 37 H 1.09003 * 109.46822 * 305.84044 * 18 17 2 38 38 H 1.09006 * 109.47093 * 290.00297 * 19 17 2 39 39 H 1.09000 * 109.47015 * 49.99832 * 19 17 2 40 40 H 1.08004 * 119.99475 * 359.97438 * 21 20 19 41 41 H 1.07999 * 120.00004 * 180.22931 * 22 21 20 42 42 H 1.07995 * 120.00159 * 179.72585 * 23 22 21 43 43 H 1.08005 * 119.99884 * 179.97438 * 24 23 22 44 44 H 1.08005 * 120.00039 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 8 2.2468 -1.9035 -1.1969 6 7 2.2435 -0.0195 -2.3684 7 6 1.8798 1.3977 -2.4431 8 6 2.8366 -0.6858 -3.5305 9 6 1.7429 -1.2711 -4.3862 10 1 0.7094 -1.1578 -4.0940 11 6 2.0616 -1.9514 -5.5424 12 7 3.3202 -2.0890 -5.8987 13 14 0.7060 -2.6764 -6.6035 14 1 -0.1968 -1.5907 -7.0634 15 1 1.3072 -3.3519 -7.7814 16 1 -0.0701 -3.6625 -5.8095 17 7 2.0198 -0.6925 1.1993 18 6 3.4880 -0.7339 1.2207 19 6 1.4929 -0.0678 2.4200 20 6 1.8097 -0.9397 3.6076 21 6 0.9164 -1.9166 4.0058 22 6 1.2092 -2.7197 5.0921 23 6 2.3906 -2.5389 5.7868 24 6 3.2815 -1.5585 5.3918 25 6 2.9909 -0.7586 4.3025 26 1 -0.3633 0.6317 0.8104 27 1 -0.3634 0.3859 -0.9524 28 1 -0.3632 -1.0179 0.1419 29 1 2.7357 2.0082 -2.1549 30 1 1.5851 1.6439 -3.4632 31 1 1.0482 1.5956 -1.7668 32 1 3.4056 0.0385 -4.1134 33 1 3.4998 -1.4823 -3.1933 34 1 3.5445 -2.5673 -6.7122 35 1 3.8786 0.2784 1.3244 36 1 3.8222 -1.3402 2.0626 37 1 3.8527 -1.1706 0.2910 38 1 1.9532 0.9111 2.5549 39 1 0.4127 0.0477 2.3319 40 1 -0.0088 -2.0546 3.4660 41 1 0.5130 -3.4853 5.4009 42 1 2.6174 -3.1633 6.6383 43 1 4.2044 -1.4170 5.9348 44 1 3.6868 0.0076 3.9942 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072938414.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:51 Heat of formation + Delta-G solvation = 4.667313 kcal Electronic energy + Delta-G solvation = -23307.538015 eV Core-core repulsion = 20032.303106 eV Total energy + Delta-G solvation = -3275.234909 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 9.86 seconds Orbital eigenvalues (eV) -39.89446 -39.05258 -36.70362 -34.71272 -32.75025 -32.07223 -31.04473 -30.45618 -27.90041 -26.96260 -25.82032 -24.54383 -23.44420 -22.58120 -21.75264 -20.54614 -18.27661 -16.97028 -16.57215 -16.43956 -15.96725 -15.36847 -15.22816 -15.01467 -14.56044 -14.20152 -14.00898 -13.60319 -13.47599 -13.17071 -12.76399 -12.69454 -12.52621 -12.17119 -12.11027 -11.98724 -11.72900 -11.45012 -11.41759 -11.28707 -11.10493 -11.01316 -10.88371 -10.84226 -10.54039 -10.12638 -9.60933 -8.97241 -8.88088 -8.76513 -8.40657 -8.12285 -7.59884 -6.01538 -4.05973 1.25559 1.34562 3.33774 3.38147 3.38973 3.42514 3.58948 3.91659 4.28770 4.47467 4.69644 4.75862 4.92188 4.99533 5.02459 5.19618 5.27773 5.29430 5.33684 5.35355 5.43808 5.55162 5.61895 5.66008 5.72334 5.78881 5.86761 5.91958 5.93951 5.97891 6.18169 6.23309 6.34283 6.38182 6.43330 6.56483 6.90899 6.97781 7.11663 7.17353 7.45272 7.58076 7.95039 8.26358 8.45790 8.93842 9.16568 9.58992 11.06553 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.025880 B = 0.003362 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.642898 B = 8326.365961 C = 8511.698071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.064 3.936 3 H 0.055 0.945 4 C 0.509 3.491 5 O -0.518 6.518 6 N -0.606 5.606 7 C 0.082 3.918 8 C 0.248 3.752 9 C -0.524 4.524 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 N -0.512 5.512 18 C 0.021 3.979 19 C 0.088 3.912 20 C -0.071 4.071 21 C -0.096 4.096 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.114 4.114 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.031 0.969 33 H 0.041 0.959 34 H 0.263 0.737 35 H 0.019 0.981 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.040 0.960 39 H 0.088 0.912 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.117 7.415 20.660 22.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.047 4.047 3 H 0.072 0.928 4 C 0.294 3.706 5 O -0.393 6.393 6 N -0.339 5.339 7 C -0.062 4.062 8 C 0.129 3.871 9 C -0.563 4.563 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.535 5.535 13 Si 0.726 3.274 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.201 1.201 17 N -0.236 5.236 18 C -0.127 4.127 19 C -0.039 4.039 20 C -0.072 4.072 21 C -0.115 4.115 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.142 4.142 25 C -0.132 4.132 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.038 0.962 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.106 0.894 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.038 6.217 20.463 21.601 hybrid contribution -0.332 0.472 -0.702 0.908 sum -3.370 6.688 19.761 21.133 Atomic orbital electron populations 1.21819 0.92500 1.03550 1.02104 1.21702 0.97136 0.95705 0.90191 0.92756 1.20030 0.79086 0.87658 0.83801 1.90685 1.50306 1.14297 1.83963 1.48184 1.61758 1.10011 1.13982 1.21665 0.98838 0.82751 1.02965 1.19250 0.93839 0.92913 0.81107 1.21396 0.93318 1.35051 1.06541 0.92523 1.24939 0.95624 0.95944 0.97634 1.69922 1.16616 1.42272 1.24737 0.86559 0.81887 0.79397 0.79589 1.20289 1.21203 1.20137 1.61731 1.09419 1.52755 0.99717 1.22500 0.86719 0.99353 1.04107 1.21165 1.01150 0.93952 0.87600 1.19731 0.94623 0.97129 0.95701 1.21049 0.99633 0.94644 0.96157 1.21149 0.97317 0.99443 0.96105 1.21121 0.94656 0.98378 1.00063 1.21086 0.99446 0.96297 0.97325 1.21065 0.96489 0.99876 0.95785 0.92069 0.91332 0.90749 0.94016 0.90727 0.92434 0.95085 0.94079 0.92697 0.96209 0.91041 0.90246 0.94153 0.89356 0.85907 0.86187 0.86391 0.86314 0.86435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.33 37.16 0.31 -1.60 16 2 C 0.06 1.00 1.62 -68.86 -0.11 0.89 16 3 H 0.05 0.75 6.89 -51.93 -0.36 0.39 16 4 C 0.51 10.78 5.67 -10.99 -0.06 10.72 16 5 O -0.52 -13.43 15.27 5.56 0.08 -13.35 16 6 N -0.61 -13.00 2.86 -182.95 -0.52 -13.52 16 7 C 0.08 1.31 9.79 59.85 0.59 1.90 16 8 C 0.25 6.57 5.13 -5.19 -0.03 6.54 16 9 C -0.52 -15.07 9.39 -34.44 -0.32 -15.39 16 10 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 13 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 N -0.51 -7.76 4.35 -237.73 -1.03 -8.79 16 18 C 0.02 0.32 8.78 60.06 0.53 0.85 16 19 C 0.09 1.03 4.89 -4.98 -0.02 1.01 16 20 C -0.07 -0.84 4.88 -104.63 -0.51 -1.35 16 21 C -0.10 -1.10 9.70 -39.58 -0.38 -1.48 16 22 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 23 C -0.12 -1.21 10.05 -39.58 -0.40 -1.60 16 24 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 25 C -0.11 -1.22 8.02 -39.58 -0.32 -1.54 16 26 H 0.06 0.62 6.61 -51.93 -0.34 0.28 16 27 H 0.07 0.92 7.08 -51.93 -0.37 0.55 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 31 H 0.06 0.76 5.44 -51.93 -0.28 0.47 16 32 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 33 H 0.04 1.23 7.50 -51.93 -0.39 0.84 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.02 0.26 8.13 -51.93 -0.42 -0.16 16 36 H 0.07 1.02 6.29 -51.93 -0.33 0.70 16 37 H 0.08 1.47 6.23 -51.93 -0.32 1.14 16 38 H 0.04 0.43 8.05 -51.93 -0.42 0.01 16 39 H 0.09 0.93 5.85 -51.93 -0.30 0.63 16 40 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 41 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 43 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 44 H 0.12 1.12 8.03 -52.48 -0.42 0.70 16 LS Contribution 355.30 15.07 5.35 5.35 Total: -1.00 -33.98 355.30 -8.91 -42.89 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.88 Total: -0.81 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -1.63 Total: -2.68 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -0.82 Total: -48.52 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.08 Total: -13.35 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.98 -8.91 -42.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072938414.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.553 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.86 seconds