Wall clock time and date at job start Tue Mar 31 2020 08:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46509 * 2 1 4 4 C 1.50700 * 109.46959 * 240.00719 * 2 1 3 5 5 O 1.21279 * 119.99982 * 269.28683 * 4 2 1 6 6 N 1.34773 * 120.00146 * 89.29610 * 4 2 1 7 7 C 1.46502 * 119.99960 * 354.90342 * 6 4 2 8 8 C 1.46498 * 120.00083 * 174.90194 * 6 4 2 9 9 C 1.50703 * 109.46906 * 89.99923 * 8 6 4 10 10 H 1.07997 * 120.00363 * 0.02562 * 9 8 6 11 11 C 1.37885 * 120.00088 * 180.02562 * 9 8 6 12 12 N 1.31518 * 119.99794 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00040 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47214 * 59.99707 * 13 11 9 15 15 H 1.48498 * 109.46968 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46910 * 299.99597 * 13 11 9 17 17 N 1.46894 * 109.47329 * 120.00385 * 2 1 3 18 18 C 1.46897 * 110.99961 * 178.95164 * 17 2 1 19 19 C 1.46902 * 111.00130 * 302.90078 * 17 2 1 20 20 C 1.50693 * 109.47305 * 169.99885 * 19 17 2 21 21 C 1.38235 * 120.00550 * 269.72941 * 20 19 17 22 22 C 1.38232 * 120.00334 * 179.76566 * 21 20 19 23 23 C 1.38237 * 120.00102 * 0.50726 * 22 21 20 24 24 C 1.38234 * 119.99435 * 359.74571 * 23 22 21 25 25 C 1.38232 * 120.00421 * 0.02562 * 24 23 22 26 26 H 1.08991 * 109.47355 * 307.93598 * 1 2 3 27 27 H 1.08996 * 109.47538 * 67.94368 * 1 2 3 28 28 H 1.09001 * 109.46597 * 187.93886 * 1 2 3 29 29 H 1.09000 * 109.47534 * 91.41104 * 7 6 4 30 30 H 1.09003 * 109.47131 * 211.41003 * 7 6 4 31 31 H 1.09000 * 109.47046 * 331.40814 * 7 6 4 32 32 H 1.08998 * 109.47513 * 209.99802 * 8 6 4 33 33 H 1.08999 * 109.47214 * 330.00037 * 8 6 4 34 34 H 0.96999 * 120.00192 * 180.02562 * 12 11 9 35 35 H 1.08990 * 109.47593 * 65.83912 * 18 17 2 36 36 H 1.09004 * 109.47104 * 185.84249 * 18 17 2 37 37 H 1.09003 * 109.46822 * 305.84044 * 18 17 2 38 38 H 1.09006 * 109.47093 * 290.00297 * 19 17 2 39 39 H 1.09000 * 109.47015 * 49.99832 * 19 17 2 40 40 H 1.08004 * 119.99475 * 359.97438 * 21 20 19 41 41 H 1.07999 * 120.00004 * 180.22931 * 22 21 20 42 42 H 1.07995 * 120.00159 * 179.72585 * 23 22 21 43 43 H 1.08005 * 119.99884 * 179.97438 * 24 23 22 44 44 H 1.08005 * 120.00039 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 8 2.2468 -1.9035 -1.1969 6 7 2.2435 -0.0195 -2.3684 7 6 1.8798 1.3977 -2.4431 8 6 2.8366 -0.6858 -3.5305 9 6 1.7429 -1.2711 -4.3862 10 1 0.7094 -1.1578 -4.0940 11 6 2.0616 -1.9514 -5.5424 12 7 3.3202 -2.0890 -5.8987 13 14 0.7060 -2.6764 -6.6035 14 1 -0.1968 -1.5907 -7.0634 15 1 1.3072 -3.3519 -7.7814 16 1 -0.0701 -3.6625 -5.8095 17 7 2.0198 -0.6925 1.1993 18 6 3.4880 -0.7339 1.2207 19 6 1.4929 -0.0678 2.4200 20 6 1.8097 -0.9397 3.6076 21 6 0.9164 -1.9166 4.0058 22 6 1.2092 -2.7197 5.0921 23 6 2.3906 -2.5389 5.7868 24 6 3.2815 -1.5585 5.3918 25 6 2.9909 -0.7586 4.3025 26 1 -0.3633 0.6317 0.8104 27 1 -0.3634 0.3859 -0.9524 28 1 -0.3632 -1.0179 0.1419 29 1 2.7357 2.0082 -2.1549 30 1 1.5851 1.6439 -3.4632 31 1 1.0482 1.5956 -1.7668 32 1 3.4056 0.0385 -4.1134 33 1 3.4998 -1.4823 -3.1933 34 1 3.5445 -2.5673 -6.7122 35 1 3.8786 0.2784 1.3244 36 1 3.8222 -1.3402 2.0626 37 1 3.8527 -1.1706 0.2910 38 1 1.9532 0.9111 2.5549 39 1 0.4127 0.0477 2.3319 40 1 -0.0088 -2.0546 3.4660 41 1 0.5130 -3.4853 5.4009 42 1 2.6174 -3.1633 6.6383 43 1 4.2044 -1.4170 5.9348 44 1 3.6868 0.0076 3.9942 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072938414.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:39 Heat of formation + Delta-G solvation = -17.418143 kcal Electronic energy + Delta-G solvation = -23308.495712 eV Core-core repulsion = 20032.303106 eV Total energy + Delta-G solvation = -3276.192606 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 3.86 seconds Orbital eigenvalues (eV) -41.19478 -40.11730 -37.93605 -36.51061 -34.77074 -33.20485 -31.87141 -31.48555 -29.78266 -28.02729 -27.33504 -25.87471 -25.07060 -23.37483 -23.07308 -21.55219 -19.81726 -18.67885 -18.19002 -17.61456 -17.24623 -16.71001 -16.46893 -16.23782 -15.90769 -15.54539 -15.44076 -14.85692 -14.51615 -14.21540 -14.10534 -13.97026 -13.66985 -13.52200 -13.42808 -13.32239 -13.21095 -13.02093 -12.78689 -12.59787 -12.50752 -12.43836 -12.37433 -12.18504 -11.83236 -11.73535 -11.70251 -10.64646 -10.44926 -9.75097 -9.66977 -9.40749 -9.21159 -8.22426 -6.37236 0.46084 0.56766 1.35678 1.40582 1.47692 1.83649 2.23516 2.41652 2.81510 3.06797 3.19566 3.65566 3.84487 3.98879 4.09484 4.12267 4.21360 4.27247 4.35972 4.37717 4.39826 4.53520 4.62844 4.67885 4.70120 4.74209 4.82742 4.87072 4.92637 4.98894 5.01030 5.15986 5.20636 5.21869 5.27090 5.56003 5.60372 5.67343 5.74393 5.82508 5.95663 6.06282 6.07849 6.19219 6.70416 6.81279 7.28918 7.53241 8.84419 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.025880 B = 0.003362 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.642898 B = 8326.365961 C = 8511.698071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.077 3.923 3 H 0.085 0.915 4 C 0.501 3.499 5 O -0.579 6.579 6 N -0.613 5.613 7 C 0.076 3.924 8 C 0.263 3.737 9 C -0.541 4.541 10 H 0.053 0.947 11 C 0.006 3.994 12 N -0.930 5.930 13 Si 0.967 3.033 14 H -0.258 1.258 15 H -0.278 1.278 16 H -0.279 1.279 17 N -0.534 5.534 18 C 0.030 3.970 19 C 0.093 3.907 20 C -0.089 4.089 21 C -0.114 4.114 22 C -0.133 4.133 23 C -0.129 4.129 24 C -0.131 4.131 25 C -0.123 4.123 26 H 0.103 0.897 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.024 0.976 33 H -0.007 1.007 34 H 0.267 0.733 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.060 0.940 39 H 0.101 0.899 40 H 0.124 0.876 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.622 9.112 22.120 24.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.034 4.034 3 H 0.103 0.897 4 C 0.289 3.711 5 O -0.458 6.458 6 N -0.346 5.346 7 C -0.066 4.066 8 C 0.141 3.859 9 C -0.580 4.580 10 H 0.071 0.929 11 C -0.193 4.193 12 N -0.570 5.570 13 Si 0.792 3.208 14 H -0.183 1.183 15 H -0.203 1.203 16 H -0.205 1.205 17 N -0.259 5.259 18 C -0.118 4.118 19 C -0.033 4.033 20 C -0.089 4.089 21 C -0.133 4.133 22 C -0.151 4.151 23 C -0.147 4.147 24 C -0.148 4.148 25 C -0.141 4.141 26 H 0.122 0.878 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.042 0.958 33 H 0.011 0.989 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.120 0.880 40 H 0.142 0.858 41 H 0.154 0.846 42 H 0.158 0.842 43 H 0.157 0.843 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.560 7.976 21.942 23.788 hybrid contribution 0.198 -0.074 -1.076 1.097 sum -4.363 7.902 20.866 22.735 Atomic orbital electron populations 1.21846 0.90555 1.03294 1.03861 1.21623 0.98359 0.95959 0.87448 0.89748 1.21138 0.77629 0.87236 0.85096 1.90644 1.52826 1.17291 1.85074 1.48213 1.61362 1.12199 1.12797 1.21970 1.01286 0.79547 1.03795 1.18699 0.92926 0.91702 0.82525 1.21676 0.93488 1.35633 1.07206 0.92912 1.25880 0.98153 0.96170 0.99061 1.70046 1.18682 1.42893 1.25336 0.85471 0.78879 0.78823 0.77670 1.18258 1.20291 1.20456 1.61649 1.09236 1.54207 1.00832 1.22339 0.87266 1.00361 1.01867 1.21221 1.01872 0.94451 0.85756 1.19848 0.95265 0.97681 0.96113 1.21235 1.00001 0.95194 0.96856 1.21429 0.98036 0.99673 0.95921 1.21460 0.94292 0.98455 1.00519 1.21414 1.00259 0.95969 0.97200 1.21275 0.96412 1.00380 0.96047 0.87824 0.91218 0.92852 0.91344 0.91358 0.88836 0.95846 0.98915 0.92408 0.93883 0.90650 0.94599 0.92231 0.88038 0.85827 0.84645 0.84240 0.84286 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.33 71.98 0.60 -2.75 16 2 C 0.08 2.28 1.62 44.17 0.07 2.35 16 3 H 0.08 1.99 6.89 -2.39 -0.02 1.97 16 4 C 0.50 21.59 5.67 87.66 0.50 22.09 16 5 O -0.58 -31.72 15.27 -3.03 -0.05 -31.77 16 6 N -0.61 -26.65 2.86 -851.13 -2.43 -29.08 16 7 C 0.08 2.28 9.79 127.77 1.25 3.54 16 8 C 0.26 14.57 5.13 85.63 0.44 15.01 16 9 C -0.54 -31.97 9.39 25.60 0.24 -31.73 16 10 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 11 C 0.01 0.36 5.46 84.66 0.46 0.82 16 12 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 13 Si 0.97 45.77 29.54 68.60 2.03 47.79 16 14 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 15 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 16 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 17 N -0.53 -15.55 4.35 -906.05 -3.94 -19.50 16 18 C 0.03 0.89 8.78 127.69 1.12 2.01 16 19 C 0.09 1.94 4.89 85.55 0.42 2.35 16 20 C -0.09 -1.93 4.88 -19.87 -0.10 -2.03 16 21 C -0.11 -2.49 9.70 22.27 0.22 -2.28 16 22 C -0.13 -2.56 10.05 22.27 0.22 -2.34 16 23 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 24 C -0.13 -2.33 10.05 22.27 0.22 -2.10 16 25 C -0.12 -2.42 8.02 22.27 0.18 -2.24 16 26 H 0.10 1.65 6.61 -2.39 -0.02 1.63 16 27 H 0.07 1.68 7.08 -2.39 -0.02 1.66 16 28 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.07 2.15 8.08 -2.39 -0.02 2.13 16 31 H 0.09 2.13 5.44 -2.39 -0.01 2.12 16 32 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 33 H -0.01 -0.47 7.50 -2.39 -0.02 -0.49 16 34 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 35 H 0.04 1.05 8.13 -2.39 -0.02 1.03 16 36 H 0.07 2.15 6.29 -2.38 -0.02 2.13 16 37 H 0.04 1.38 6.23 -2.39 -0.01 1.36 16 38 H 0.06 1.02 8.05 -2.38 -0.02 1.00 16 39 H 0.10 1.80 5.85 -2.39 -0.01 1.79 16 40 H 0.12 2.55 8.06 -2.91 -0.02 2.52 16 41 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 42 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 43 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 44 H 0.13 2.16 8.03 -2.91 -0.02 2.13 16 Total: -1.00 -78.29 355.30 2.93 -75.36 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.97 Total: 13.63 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 6.07 Total: 0.65 kcal Atomic # 7 Polarization: -99.58 SS G_CDS: -6.09 Total: -105.67 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -0.05 Total: -31.77 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -78.29 2.93 -75.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072938414.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.941 kcal (2) G-P(sol) polarization free energy of solvation -78.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.86 seconds