Wall clock time and date at job start Tue Mar 31 2020 07:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47133 * 2 1 4 4 C 1.50703 * 109.47063 * 239.99868 * 2 1 3 5 5 C 1.38233 * 119.99742 * 112.04936 * 4 2 1 6 6 C 1.38230 * 119.99991 * 179.81086 * 5 4 2 7 7 C 1.38243 * 119.99893 * 0.39998 * 6 5 4 8 8 C 1.38233 * 119.99808 * 359.85313 * 7 6 5 9 9 C 1.38234 * 120.00009 * 292.32804 * 4 2 1 10 10 N 1.46496 * 109.46872 * 120.00293 * 2 1 3 11 11 C 1.46495 * 120.00377 * 54.10393 * 10 2 1 12 12 C 1.34783 * 119.99746 * 233.82972 * 10 2 1 13 13 O 1.21278 * 119.99812 * 359.97438 * 12 10 2 14 14 C 1.50699 * 119.99906 * 180.02562 * 12 10 2 15 15 N 1.46903 * 109.47133 * 180.02562 * 14 12 10 16 16 C 1.46898 * 111.00378 * 66.04243 * 15 14 12 17 17 C 1.46896 * 110.99789 * 190.00027 * 15 14 12 18 18 C 1.50704 * 109.46870 * 169.99888 * 17 15 14 19 19 H 1.07994 * 120.00187 * 359.97438 * 18 17 15 20 20 C 1.37882 * 119.99889 * 180.02562 * 18 17 15 21 21 N 1.31515 * 120.00032 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00062 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47035 * 90.00419 * 22 20 18 24 24 H 1.48497 * 109.47400 * 210.00253 * 22 20 18 25 25 H 1.48506 * 109.47167 * 330.00649 * 22 20 18 26 26 H 1.08995 * 109.47863 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.47192 * 300.00354 * 1 2 3 28 28 H 1.09000 * 109.46855 * 59.99411 * 1 2 3 29 29 H 1.08003 * 120.00555 * 359.97438 * 5 4 2 30 30 H 1.07999 * 120.00714 * 180.23005 * 6 5 4 31 31 H 1.08003 * 119.99893 * 179.83112 * 7 6 5 32 32 H 1.07998 * 120.00142 * 179.97438 * 8 7 6 33 33 H 1.08001 * 120.00213 * 359.97312 * 9 4 2 34 34 H 1.09002 * 109.47451 * 95.12747 * 11 10 2 35 35 H 1.08994 * 109.47219 * 215.12564 * 11 10 2 36 36 H 1.08998 * 109.47208 * 335.12997 * 11 10 2 37 37 H 1.09004 * 109.46873 * 299.99646 * 14 12 10 38 38 H 1.09001 * 109.47586 * 59.99913 * 14 12 10 39 39 H 1.08998 * 109.47344 * 59.99806 * 16 15 14 40 40 H 1.08995 * 109.47331 * 180.02562 * 16 15 14 41 41 H 1.09001 * 109.46981 * 300.00423 * 16 15 14 42 42 H 1.08998 * 109.47416 * 289.99219 * 17 15 14 43 43 H 1.08997 * 109.47612 * 49.99853 * 17 15 14 44 44 H 0.96993 * 119.99953 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 2.6864 -0.0004 -2.2198 6 6 3.1506 -0.6527 -3.3467 7 6 2.9534 -2.0137 -3.4880 8 6 2.2947 -2.7227 -2.5010 9 6 1.8339 -2.0711 -1.3724 10 7 2.0182 -0.6907 1.1961 11 6 1.5611 -2.0500 1.4950 12 6 2.8923 -0.0775 2.0187 13 8 3.2750 1.0458 1.7683 14 6 3.3951 -0.7882 3.2488 15 7 4.3284 0.0858 3.9721 16 6 3.6368 1.2657 4.5083 17 6 5.0187 -0.6502 5.0397 18 6 6.1340 0.1980 5.5944 19 1 6.3125 1.1848 5.1937 20 6 6.9273 -0.2863 6.6129 21 7 7.9003 0.4540 7.0973 22 14 6.6190 -1.9935 7.3056 23 1 7.4182 -2.9879 6.5455 24 1 7.0179 -2.0270 8.7356 25 1 5.1759 -2.3230 7.1864 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 2.8371 1.0635 -2.1113 30 1 3.6649 -0.0987 -4.1180 31 1 3.3138 -2.5228 -4.3697 32 1 2.1403 -3.7859 -2.6116 33 1 1.3193 -2.6251 -0.6012 34 1 2.2813 -2.7695 1.1056 35 1 1.4710 -2.1740 2.5742 36 1 0.5908 -2.2180 1.0278 37 1 2.5530 -1.0344 3.8957 38 1 3.9078 -1.7042 2.9553 39 1 2.8531 0.9465 5.1953 40 1 4.3509 1.8957 5.0385 41 1 3.1932 1.8305 3.6883 42 1 4.3113 -0.8854 5.8349 43 1 5.4316 -1.5744 4.6356 44 1 8.4586 0.1132 7.8135 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078645722.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:45 Heat of formation + Delta-G solvation = -9.997206 kcal Electronic energy + Delta-G solvation = -23222.550635 eV Core-core repulsion = 19946.679825 eV Total energy + Delta-G solvation = -3275.870810 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.44085 -40.00291 -37.98802 -36.90967 -34.62724 -33.54089 -31.82477 -30.59015 -30.07732 -28.79249 -27.98331 -26.02570 -24.39814 -23.42179 -22.57928 -21.58798 -20.11507 -18.96814 -18.22105 -17.83533 -17.15689 -16.86523 -16.36613 -16.10225 -15.88303 -15.61031 -15.45943 -14.94691 -14.66609 -14.54898 -14.29294 -14.24550 -13.81227 -13.50362 -13.46702 -13.19824 -13.15728 -12.96295 -12.82052 -12.63636 -12.39494 -12.37088 -12.26932 -11.88301 -11.84574 -11.75429 -11.52957 -10.77301 -10.67141 -9.81263 -9.67379 -9.65656 -9.01922 -8.26629 -6.31694 0.39549 0.50879 1.36964 1.40250 1.50626 1.63950 1.95226 2.36847 2.90748 3.05990 3.26791 3.56721 3.76658 3.95606 4.13244 4.19453 4.21795 4.25695 4.29297 4.34243 4.36540 4.50774 4.58680 4.61020 4.65436 4.71514 4.77615 4.89388 4.90287 4.96754 5.00302 5.08346 5.15612 5.19975 5.24608 5.51228 5.53081 5.57147 5.62980 5.72660 5.93972 6.12005 6.23448 6.37107 6.64930 6.74751 7.24371 7.31782 8.90709 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.022422 B = 0.003429 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.482678 B = 8163.615067 C = 8375.982410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.174 3.826 3 H 0.076 0.924 4 C -0.105 4.105 5 C -0.130 4.130 6 C -0.130 4.130 7 C -0.128 4.128 8 C -0.125 4.125 9 C -0.120 4.120 10 N -0.606 5.606 11 C 0.059 3.941 12 C 0.515 3.485 13 O -0.565 6.565 14 C 0.039 3.961 15 N -0.544 5.544 16 C 0.045 3.955 17 C 0.175 3.825 18 C -0.523 4.523 19 H 0.028 0.972 20 C 0.003 3.997 21 N -0.952 5.952 22 Si 0.956 3.044 23 H -0.263 1.263 24 H -0.283 1.283 25 H -0.242 1.242 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.114 0.886 30 H 0.134 0.866 31 H 0.141 0.859 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.113 0.887 39 H 0.024 0.976 40 H 0.043 0.957 41 H 0.070 0.930 42 H -0.001 1.001 43 H 0.037 0.963 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.083 -11.532 -19.340 30.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.071 3.929 3 H 0.095 0.905 4 C -0.106 4.106 5 C -0.149 4.149 6 C -0.148 4.148 7 C -0.146 4.146 8 C -0.143 4.143 9 C -0.138 4.138 10 N -0.339 5.339 11 C -0.082 4.082 12 C 0.304 3.696 13 O -0.443 6.443 14 C -0.092 4.092 15 N -0.269 5.269 16 C -0.103 4.103 17 C 0.048 3.952 18 C -0.561 4.561 19 H 0.046 0.954 20 C -0.194 4.194 21 N -0.593 5.593 22 Si 0.778 3.222 23 H -0.188 1.188 24 H -0.209 1.209 25 H -0.165 1.165 26 H 0.100 0.900 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.132 0.868 30 H 0.152 0.848 31 H 0.159 0.841 32 H 0.164 0.836 33 H 0.165 0.835 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.122 0.878 37 H 0.100 0.900 38 H 0.131 0.869 39 H 0.043 0.957 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.017 0.983 43 H 0.055 0.945 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.411 -10.770 -19.665 29.656 hybrid contribution 0.174 -0.106 1.035 1.055 sum -19.237 -10.876 -18.630 28.904 Atomic orbital electron populations 1.22074 0.91576 1.03861 1.02934 1.19915 0.95681 0.95897 0.81454 0.90549 1.20199 0.99602 0.95276 0.95537 1.21239 0.98588 1.00207 0.94852 1.21386 0.99966 0.95614 0.97869 1.21510 0.98860 0.94176 1.00056 1.21509 0.97970 1.01112 0.93711 1.21523 1.00143 0.93428 0.98689 1.47963 1.44628 1.17554 1.23803 1.22297 1.01612 0.81082 1.03199 1.20902 0.77860 0.86046 0.84837 1.90631 1.58004 1.21038 1.74655 1.22094 0.96748 0.96694 0.93668 1.61454 1.28763 1.08183 1.28473 1.22193 0.96388 0.93469 0.98258 1.19985 0.92819 0.93851 0.88544 1.21271 1.14575 1.02360 1.17875 0.95382 1.25974 0.94231 1.02639 0.96515 1.70077 1.20866 1.39893 1.28429 0.85592 0.80365 0.78678 0.77532 1.18760 1.20866 1.16511 0.89952 0.92092 0.90500 0.86782 0.84819 0.84071 0.83570 0.83477 0.91325 0.89770 0.87829 0.90026 0.86868 0.95724 0.93773 0.91191 0.98299 0.94492 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.95 71.98 0.64 -1.55 16 2 C 0.17 3.80 2.95 44.25 0.13 3.93 16 3 H 0.08 2.16 6.68 -2.39 -0.02 2.15 16 4 C -0.11 -2.19 4.95 -19.87 -0.10 -2.29 16 5 C -0.13 -2.89 9.67 22.27 0.22 -2.68 16 6 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 7 C -0.13 -2.04 10.05 22.27 0.22 -1.81 16 8 C -0.13 -1.86 10.05 22.27 0.22 -1.63 16 9 C -0.12 -1.96 8.36 22.27 0.19 -1.77 16 10 N -0.61 -13.94 2.75 -826.83 -2.27 -16.21 16 11 C 0.06 0.80 7.92 127.77 1.01 1.81 16 12 C 0.51 16.86 7.40 87.66 0.65 17.51 16 13 O -0.57 -23.87 13.65 -3.02 -0.04 -23.91 16 14 C 0.04 1.26 4.07 85.56 0.35 1.60 16 15 N -0.54 -24.34 4.49 -931.66 -4.18 -28.52 16 16 C 0.05 1.97 9.03 127.69 1.15 3.12 16 17 C 0.17 8.46 3.79 85.56 0.32 8.78 16 18 C -0.52 -31.46 9.01 25.60 0.23 -31.23 16 19 H 0.03 1.93 7.37 -2.91 -0.02 1.91 16 20 C 0.00 0.19 5.47 84.66 0.46 0.65 16 21 N -0.95 -61.10 13.96 21.45 0.30 -60.80 16 22 Si 0.96 43.57 27.47 68.60 1.88 45.45 16 23 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.24 -9.92 6.54 99.48 0.65 -9.27 16 26 H 0.08 0.86 6.23 -2.39 -0.01 0.85 16 27 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.11 2.58 7.96 -2.91 -0.02 2.56 16 30 H 0.13 2.03 8.06 -2.91 -0.02 2.00 16 31 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 32 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 33 H 0.15 1.65 4.77 -2.91 -0.01 1.64 16 34 H 0.07 0.85 7.36 -2.39 -0.02 0.83 16 35 H 0.08 0.99 6.66 -2.39 -0.02 0.98 16 36 H 0.10 0.82 5.14 -2.39 -0.01 0.81 16 37 H 0.08 2.18 7.40 -2.38 -0.02 2.16 16 38 H 0.11 3.26 7.89 -2.39 -0.02 3.24 16 39 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.04 2.20 6.76 -2.39 -0.02 2.18 16 41 H 0.07 3.00 5.88 -2.39 -0.01 2.99 16 42 H 0.00 -0.03 7.18 -2.39 -0.02 -0.05 16 43 H 0.04 1.69 7.36 -2.39 -0.02 1.67 16 44 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -79.44 346.32 2.54 -76.89 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.93 Total: 14.86 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 5.93 Total: -7.77 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -6.16 Total: -105.53 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.04 Total: -23.91 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.88 Total: 45.45 kcal Total: -79.44 2.54 -76.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078645722.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.897 kcal (2) G-P(sol) polarization free energy of solvation -79.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds