Wall clock time and date at job start Tue Mar 31 2020 08:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47253 * 2 1 4 4 C 1.50706 * 109.46623 * 119.99988 * 2 1 3 5 5 C 1.38140 * 120.03584 * 304.89812 * 4 2 1 6 6 C 1.38259 * 120.06909 * 180.02562 * 5 4 2 7 7 C 1.38301 * 120.13962 * 359.97438 * 6 5 4 8 8 C 1.38089 * 120.07286 * 0.02562 * 7 6 5 9 9 C 1.38844 * 120.03463 * 124.92499 * 4 2 1 10 10 N 1.39951 * 120.07185 * 359.95448 * 9 4 2 11 11 C 1.34769 * 120.00170 * 145.18614 * 10 9 4 12 12 O 1.21592 * 120.00189 * 4.53497 * 11 10 9 13 13 N 1.34778 * 120.00000 * 184.52601 * 11 10 9 14 14 C 1.46496 * 120.00129 * 0.02562 * 13 11 10 15 15 C 1.46497 * 119.99800 * 180.02562 * 13 11 10 16 16 H 1.09005 * 109.47594 * 359.97438 * 15 13 11 17 17 C 1.52992 * 109.47362 * 120.00250 * 15 13 11 18 18 C 1.50705 * 109.47062 * 240.00113 * 15 13 11 19 19 H 1.08006 * 119.99923 * 0.02562 * 18 15 13 20 20 C 1.37878 * 120.00240 * 179.97438 * 18 15 13 21 21 N 1.31511 * 119.99827 * 0.02562 * 20 18 15 22 22 Si 1.86795 * 119.99967 * 179.97438 * 20 18 15 23 23 H 1.48510 * 109.46896 * 90.00539 * 22 20 18 24 24 H 1.48503 * 109.47335 * 210.00226 * 22 20 18 25 25 H 1.48500 * 109.47547 * 330.00424 * 22 20 18 26 26 H 1.08999 * 109.47401 * 300.00597 * 1 2 3 27 27 H 1.09007 * 109.46775 * 59.99969 * 1 2 3 28 28 H 1.08998 * 109.47571 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47401 * 239.99402 * 2 1 3 30 30 H 1.09004 * 109.47006 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.46924 * 299.99503 * 3 2 1 32 32 H 1.09006 * 109.46815 * 60.00012 * 3 2 1 33 33 H 1.08000 * 119.96008 * 0.03171 * 5 4 2 34 34 H 1.08002 * 119.92660 * 180.02562 * 6 5 4 35 35 H 1.08000 * 119.96343 * 180.27266 * 7 6 5 36 36 H 1.08000 * 120.03642 * 180.02562 * 8 7 6 37 37 H 0.97004 * 119.99492 * 325.19470 * 10 9 4 38 38 H 1.08997 * 109.47368 * 89.99421 * 14 13 11 39 39 H 1.08997 * 109.47013 * 209.99906 * 14 13 11 40 40 H 1.09006 * 109.46995 * 330.00009 * 14 13 11 41 41 H 1.09004 * 109.47644 * 59.99856 * 17 15 13 42 42 H 1.09005 * 109.47504 * 180.02562 * 17 15 13 43 43 H 1.09002 * 109.47440 * 299.99924 * 17 15 13 44 44 H 0.97005 * 120.00387 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 1.2306 5 6 1.6176 -0.3010 2.4830 6 6 2.0783 -0.9519 3.6124 7 6 2.9549 -2.0149 3.4923 8 6 3.3732 -2.4291 2.2431 9 6 2.9126 -1.7769 1.1066 10 7 3.3344 -2.1945 -0.1608 11 6 4.5874 -2.6590 -0.3349 12 8 5.3247 -2.7930 0.6226 13 7 5.0233 -2.9752 -1.5705 14 6 4.1352 -2.8134 -2.7242 15 6 6.3853 -3.4807 -1.7596 16 1 6.8910 -3.5320 -0.7954 17 6 6.3291 -4.8773 -2.3815 18 6 7.1427 -2.5534 -2.6748 19 1 6.6581 -1.6750 -3.0751 20 6 8.4546 -2.8256 -3.0002 21 7 9.0448 -3.8948 -2.5123 22 14 9.3931 -1.6765 -4.1351 23 1 10.0706 -0.6292 -3.3292 24 1 10.4079 -2.4505 -4.8944 25 1 8.4471 -1.0363 -5.0841 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.9327 0.5284 2.5800 34 1 1.7523 -0.6301 4.5905 35 1 3.3096 -2.5241 4.3762 36 1 4.0574 -3.2595 2.1500 37 1 2.7247 -2.1494 -0.9140 38 1 4.2543 -1.8115 -3.1367 39 1 4.3892 -3.5519 -3.4846 40 1 3.1013 -2.9563 -2.4098 41 1 5.8236 -4.8257 -3.3459 42 1 7.3425 -5.2537 -2.5219 43 1 5.7813 -5.5481 -1.7196 44 1 9.9676 -4.0866 -2.7415 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086280196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:35 Heat of formation + Delta-G solvation = -2.914241 kcal Electronic energy + Delta-G solvation = -23726.644147 eV Core-core repulsion = 20451.080477 eV Total energy + Delta-G solvation = -3275.563670 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -40.46764 -38.73349 -35.64937 -35.30382 -34.26876 -32.76574 -29.95843 -29.61689 -28.38127 -27.21387 -26.19929 -25.20900 -23.58899 -22.75978 -20.89731 -19.91550 -19.15145 -17.97795 -16.94473 -16.23830 -15.87401 -15.21914 -15.07661 -14.70868 -14.28482 -13.89757 -13.81283 -13.61537 -13.52009 -13.17313 -12.73766 -12.62443 -12.41005 -12.07114 -12.05551 -11.75134 -11.57290 -11.51240 -11.21133 -11.05768 -10.85542 -10.73702 -10.70442 -10.68327 -10.25064 -10.16534 -9.96749 -9.28789 -9.15113 -8.54601 -8.42615 -7.91015 -7.50350 -6.07281 -4.14933 1.51364 1.63002 3.19842 3.27493 3.34143 3.36684 3.72132 4.09457 4.35612 4.52162 4.65348 4.76479 5.11788 5.18732 5.23921 5.25447 5.31637 5.48856 5.52929 5.53333 5.68578 5.74103 5.84588 5.88855 5.90896 5.96751 6.14271 6.18610 6.20500 6.25315 6.51564 6.60907 6.73422 6.75109 6.80937 6.85431 7.01298 7.15935 7.34821 7.45885 7.69128 7.82041 8.05623 8.20926 8.62747 8.85982 9.20933 9.52033 10.98100 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019897 B = 0.004253 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.886031 B = 6581.774451 C = 7062.427281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C -0.141 4.141 4 C -0.114 4.114 5 C -0.100 4.100 6 C -0.146 4.146 7 C -0.107 4.107 8 C -0.120 4.120 9 C 0.182 3.818 10 N -0.695 5.695 11 C 0.697 3.303 12 O -0.578 6.578 13 N -0.604 5.604 14 C 0.087 3.913 15 C 0.272 3.728 16 H 0.065 0.935 17 C -0.147 4.147 18 C -0.525 4.525 19 H 0.058 0.942 20 C 0.065 3.935 21 N -0.888 5.888 22 Si 0.899 3.101 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.143 0.857 37 H 0.400 0.600 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.030 0.970 42 H 0.095 0.905 43 H 0.012 0.988 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.400 5.592 4.796 18.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.072 4.072 3 C -0.198 4.198 4 C -0.117 4.117 5 C -0.118 4.118 6 C -0.165 4.165 7 C -0.125 4.125 8 C -0.140 4.140 9 C 0.085 3.915 10 N -0.345 5.345 11 C 0.399 3.601 12 O -0.456 6.456 13 N -0.338 5.338 14 C -0.057 4.057 15 C 0.172 3.828 16 H 0.083 0.917 17 C -0.206 4.206 18 C -0.564 4.564 19 H 0.077 0.923 20 C -0.138 4.138 21 N -0.526 5.526 22 Si 0.727 3.273 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.200 1.200 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.160 0.840 37 H 0.238 0.762 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.061 0.939 41 H 0.049 0.951 42 H 0.113 0.887 43 H 0.031 0.969 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.579 5.344 5.353 18.223 hybrid contribution 0.306 0.662 -1.110 1.329 sum -16.273 6.006 4.242 17.858 Atomic orbital electron populations 1.21868 0.94459 1.01873 1.01786 1.19987 0.95608 0.96224 0.95378 1.21814 1.01655 0.94799 1.01548 1.19579 1.01288 0.95490 0.95355 1.20653 1.00126 0.99700 0.91334 1.20996 0.99677 0.97712 0.98116 1.21023 0.97311 0.97153 0.97053 1.21423 1.00566 1.00984 0.91030 1.17413 0.95942 0.93240 0.84866 1.43012 1.13833 1.68130 1.09532 1.15986 0.80789 0.78686 0.84674 1.90861 1.55429 1.60017 1.39290 1.47601 1.16575 1.66391 1.03265 1.21498 0.91533 1.02186 0.90456 1.18899 0.74727 0.90749 0.98424 0.91685 1.22116 1.03229 0.97557 0.97705 1.21323 0.96878 1.08994 1.29174 0.92342 1.24878 0.97271 0.95413 0.96190 1.69876 1.12719 1.25703 1.44316 0.86491 0.79615 0.80669 0.80568 1.20624 1.21121 1.19964 0.92413 0.92517 0.92629 0.91029 0.92350 0.92534 0.92546 0.86310 0.86556 0.86181 0.83965 0.76156 0.93222 0.90334 0.93857 0.95125 0.88676 0.96934 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.95 37.16 0.33 -0.91 16 2 C -0.05 -0.59 3.02 -91.77 -0.28 -0.86 16 3 C -0.14 -1.50 9.05 37.16 0.34 -1.16 16 4 C -0.11 -1.52 4.80 -104.43 -0.50 -2.02 16 5 C -0.10 -1.19 8.74 -39.61 -0.35 -1.53 16 6 C -0.15 -1.76 10.04 -39.55 -0.40 -2.16 16 7 C -0.11 -1.48 10.04 -39.61 -0.40 -1.88 16 8 C -0.12 -2.01 8.70 -39.39 -0.34 -2.35 16 9 C 0.18 2.93 6.29 -83.68 -0.53 2.41 16 10 N -0.69 -11.59 4.79 -14.22 -0.07 -11.66 16 11 C 0.70 14.88 8.13 -86.92 -0.71 14.18 16 12 O -0.58 -14.52 13.09 5.29 0.07 -14.45 16 13 N -0.60 -12.92 2.75 -181.01 -0.50 -13.42 16 14 C 0.09 1.44 9.48 59.84 0.57 2.01 16 15 C 0.27 6.95 2.64 -69.09 -0.18 6.77 16 16 H 0.07 1.93 6.90 -51.93 -0.36 1.58 16 17 C -0.15 -3.50 8.95 37.15 0.33 -3.17 16 18 C -0.52 -14.19 8.37 -34.44 -0.29 -14.48 16 19 H 0.06 1.56 7.65 -52.48 -0.40 1.16 16 20 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 21 N -0.89 -25.08 11.32 55.43 0.63 -24.45 16 22 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 H 0.06 0.46 7.13 -51.93 -0.37 0.09 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.81 6.04 -51.93 -0.31 0.49 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.54 7.69 -51.93 -0.40 0.14 16 33 H 0.12 1.14 7.10 -52.49 -0.37 0.76 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.14 2.72 6.21 -52.49 -0.33 2.40 16 37 H 0.40 5.49 4.88 -40.82 -0.20 5.29 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.30 6.43 -51.93 -0.33 0.97 16 40 H 0.04 0.55 6.30 -51.93 -0.33 0.22 16 41 H 0.03 0.66 6.66 -51.93 -0.35 0.32 16 42 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 43 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 347.64 15.07 5.24 5.24 Total: -1.00 -31.10 347.64 -8.72 -39.82 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -6.58 Total: 6.34 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -2.49 Total: -3.48 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.06 Total: -49.53 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.07 Total: -14.45 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.10 -8.72 -39.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086280196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.906 kcal (2) G-P(sol) polarization free energy of solvation -31.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds