Wall clock time and date at job start Tue Mar 31 2020 08:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47253 * 2 1 4 4 C 1.50706 * 109.46623 * 119.99988 * 2 1 3 5 5 C 1.38140 * 120.03584 * 304.89812 * 4 2 1 6 6 C 1.38259 * 120.06909 * 180.02562 * 5 4 2 7 7 C 1.38301 * 120.13962 * 359.97438 * 6 5 4 8 8 C 1.38089 * 120.07286 * 0.02562 * 7 6 5 9 9 C 1.38844 * 120.03463 * 124.92499 * 4 2 1 10 10 N 1.39951 * 120.07185 * 359.95448 * 9 4 2 11 11 C 1.34769 * 120.00170 * 145.18614 * 10 9 4 12 12 O 1.21592 * 120.00189 * 4.53497 * 11 10 9 13 13 N 1.34778 * 120.00000 * 184.52601 * 11 10 9 14 14 C 1.46496 * 120.00129 * 0.02562 * 13 11 10 15 15 C 1.46497 * 119.99800 * 180.02562 * 13 11 10 16 16 H 1.09005 * 109.47594 * 359.97438 * 15 13 11 17 17 C 1.52992 * 109.47362 * 120.00250 * 15 13 11 18 18 C 1.50705 * 109.47062 * 240.00113 * 15 13 11 19 19 H 1.08006 * 119.99923 * 0.02562 * 18 15 13 20 20 C 1.37878 * 120.00240 * 179.97438 * 18 15 13 21 21 N 1.31511 * 119.99827 * 0.02562 * 20 18 15 22 22 Si 1.86795 * 119.99967 * 179.97438 * 20 18 15 23 23 H 1.48510 * 109.46896 * 90.00539 * 22 20 18 24 24 H 1.48503 * 109.47335 * 210.00226 * 22 20 18 25 25 H 1.48500 * 109.47547 * 330.00424 * 22 20 18 26 26 H 1.08999 * 109.47401 * 300.00597 * 1 2 3 27 27 H 1.09007 * 109.46775 * 59.99969 * 1 2 3 28 28 H 1.08998 * 109.47571 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47401 * 239.99402 * 2 1 3 30 30 H 1.09004 * 109.47006 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.46924 * 299.99503 * 3 2 1 32 32 H 1.09006 * 109.46815 * 60.00012 * 3 2 1 33 33 H 1.08000 * 119.96008 * 0.03171 * 5 4 2 34 34 H 1.08002 * 119.92660 * 180.02562 * 6 5 4 35 35 H 1.08000 * 119.96343 * 180.27266 * 7 6 5 36 36 H 1.08000 * 120.03642 * 180.02562 * 8 7 6 37 37 H 0.97004 * 119.99492 * 325.19470 * 10 9 4 38 38 H 1.08997 * 109.47368 * 89.99421 * 14 13 11 39 39 H 1.08997 * 109.47013 * 209.99906 * 14 13 11 40 40 H 1.09006 * 109.46995 * 330.00009 * 14 13 11 41 41 H 1.09004 * 109.47644 * 59.99856 * 17 15 13 42 42 H 1.09005 * 109.47504 * 180.02562 * 17 15 13 43 43 H 1.09002 * 109.47440 * 299.99924 * 17 15 13 44 44 H 0.97005 * 120.00387 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 1.2306 5 6 1.6176 -0.3010 2.4830 6 6 2.0783 -0.9519 3.6124 7 6 2.9549 -2.0149 3.4923 8 6 3.3732 -2.4291 2.2431 9 6 2.9126 -1.7769 1.1066 10 7 3.3344 -2.1945 -0.1608 11 6 4.5874 -2.6590 -0.3349 12 8 5.3247 -2.7930 0.6226 13 7 5.0233 -2.9752 -1.5705 14 6 4.1352 -2.8134 -2.7242 15 6 6.3853 -3.4807 -1.7596 16 1 6.8910 -3.5320 -0.7954 17 6 6.3291 -4.8773 -2.3815 18 6 7.1427 -2.5534 -2.6748 19 1 6.6581 -1.6750 -3.0751 20 6 8.4546 -2.8256 -3.0002 21 7 9.0448 -3.8948 -2.5123 22 14 9.3931 -1.6765 -4.1351 23 1 10.0706 -0.6292 -3.3292 24 1 10.4079 -2.4505 -4.8944 25 1 8.4471 -1.0363 -5.0841 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.9327 0.5284 2.5800 34 1 1.7523 -0.6301 4.5905 35 1 3.3096 -2.5241 4.3762 36 1 4.0574 -3.2595 2.1500 37 1 2.7247 -2.1494 -0.9140 38 1 4.2543 -1.8115 -3.1367 39 1 4.3892 -3.5519 -3.4846 40 1 3.1013 -2.9563 -2.4098 41 1 5.8236 -4.8257 -3.3459 42 1 7.3425 -5.2537 -2.5219 43 1 5.7813 -5.5481 -1.7196 44 1 9.9676 -4.0866 -2.7415 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086280196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:34 Heat of formation + Delta-G solvation = -20.088803 kcal Electronic energy + Delta-G solvation = -23727.388892 eV Core-core repulsion = 20451.080477 eV Total energy + Delta-G solvation = -3276.308414 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.85049 -40.06903 -37.34161 -36.30409 -35.74754 -34.67139 -31.59517 -30.75213 -29.72972 -27.94075 -27.70660 -27.28362 -24.67330 -24.11198 -22.45173 -20.89250 -20.73803 -19.40633 -18.58816 -18.01127 -17.22110 -16.82218 -16.41510 -16.15849 -15.78249 -15.04474 -14.97476 -14.87378 -14.57777 -14.44587 -14.40401 -14.09598 -13.51431 -13.34047 -13.19488 -12.99226 -12.94910 -12.84214 -12.74214 -12.68717 -12.56914 -12.18879 -12.09977 -12.02223 -11.75119 -11.55180 -11.30456 -11.17978 -10.89952 -10.52660 -9.62521 -9.48192 -8.89145 -8.14781 -6.31215 0.42281 0.52204 1.40963 1.42330 1.52068 1.72443 2.17338 2.41505 2.93110 3.04173 3.13381 3.73810 3.89052 4.20666 4.25756 4.30912 4.34033 4.41120 4.53581 4.57955 4.64014 4.70977 4.80723 4.86069 4.87410 4.96521 4.98140 5.03157 5.04528 5.11231 5.21540 5.31549 5.37167 5.43629 5.47238 5.52468 5.63227 5.64983 5.66668 5.72555 5.97688 6.13696 6.19236 6.23898 6.75787 7.05043 7.35874 7.60845 8.89643 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019897 B = 0.004253 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.886031 B = 6581.774451 C = 7062.427281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.055 4.055 3 C -0.139 4.139 4 C -0.108 4.108 5 C -0.096 4.096 6 C -0.135 4.135 7 C -0.116 4.116 8 C -0.149 4.149 9 C 0.147 3.853 10 N -0.675 5.675 11 C 0.691 3.309 12 O -0.627 6.627 13 N -0.612 5.612 14 C 0.083 3.917 15 C 0.278 3.722 16 H 0.009 0.991 17 C -0.132 4.132 18 C -0.537 4.537 19 H 0.059 0.941 20 C 0.016 3.984 21 N -0.917 5.917 22 Si 0.965 3.035 23 H -0.284 1.284 24 H -0.279 1.279 25 H -0.261 1.261 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.030 0.970 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.134 0.866 36 H 0.105 0.895 37 H 0.415 0.585 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.050 0.950 42 H 0.070 0.930 43 H 0.019 0.981 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.250 7.888 4.196 22.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.074 4.074 3 C -0.196 4.196 4 C -0.111 4.111 5 C -0.115 4.115 6 C -0.153 4.153 7 C -0.135 4.135 8 C -0.170 4.170 9 C 0.052 3.948 10 N -0.327 5.327 11 C 0.393 3.607 12 O -0.508 6.508 13 N -0.346 5.346 14 C -0.059 4.059 15 C 0.176 3.824 16 H 0.027 0.973 17 C -0.191 4.191 18 C -0.576 4.576 19 H 0.077 0.923 20 C -0.184 4.184 21 N -0.556 5.556 22 Si 0.790 3.210 23 H -0.210 1.210 24 H -0.204 1.204 25 H -0.185 1.185 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.172 0.828 34 H 0.170 0.830 35 H 0.152 0.848 36 H 0.123 0.877 37 H 0.255 0.745 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.038 0.962 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.506 7.655 4.732 21.482 hybrid contribution 1.121 -0.021 -0.803 1.379 sum -18.385 7.634 3.930 20.291 Atomic orbital electron populations 1.21832 0.92134 1.02254 1.03183 1.20074 0.97425 0.95992 0.93885 1.21808 0.99850 0.94801 1.03153 1.19893 0.99770 0.94159 0.97237 1.21101 0.99834 1.00065 0.90465 1.21413 0.97855 0.96077 0.99981 1.21238 0.97851 0.98100 0.96270 1.21313 1.01408 1.01183 0.93085 1.17686 0.97873 0.95119 0.84078 1.42650 1.12190 1.67210 1.10608 1.16180 0.81877 0.78652 0.84029 1.90829 1.57232 1.61888 1.40834 1.47459 1.15896 1.66425 1.04773 1.21751 0.92649 1.02654 0.88851 1.18477 0.76684 0.91874 0.95386 0.97281 1.21894 1.02014 0.96523 0.98675 1.21559 0.97511 1.09238 1.29296 0.92273 1.25719 0.98163 0.96859 0.97644 1.70020 1.12991 1.27222 1.45365 0.85455 0.78376 0.78476 0.78686 1.21023 1.20416 1.18520 0.91187 0.91004 0.92776 0.91680 0.95121 0.90828 0.91132 0.82834 0.83031 0.84821 0.87741 0.74456 0.92508 0.90198 0.89864 0.93108 0.91178 0.96224 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.95 71.98 0.64 -1.21 16 2 C -0.06 -1.06 3.02 -11.54 -0.03 -1.10 16 3 C -0.14 -2.57 9.05 71.98 0.65 -1.92 16 4 C -0.11 -2.67 4.80 -19.74 -0.09 -2.77 16 5 C -0.10 -1.98 8.74 22.25 0.19 -1.78 16 6 C -0.13 -2.87 10.04 22.29 0.22 -2.65 16 7 C -0.12 -3.18 10.04 22.25 0.22 -2.96 16 8 C -0.15 -5.28 8.70 22.39 0.19 -5.08 16 9 C 0.15 4.82 6.29 38.15 0.24 5.06 16 10 N -0.68 -22.88 4.79 -317.18 -1.52 -24.40 16 11 C 0.69 30.88 8.13 179.06 1.46 32.34 16 12 O -0.63 -33.94 13.09 -4.00 -0.05 -33.99 16 13 N -0.61 -26.84 2.75 -844.86 -2.33 -29.17 16 14 C 0.08 2.65 9.48 127.77 1.21 3.87 16 15 C 0.28 14.82 2.64 44.24 0.12 14.93 16 16 H 0.01 0.59 6.90 -2.38 -0.02 0.57 16 17 C -0.13 -6.47 8.95 71.98 0.64 -5.82 16 18 C -0.54 -29.66 8.37 25.60 0.21 -29.44 16 19 H 0.06 3.18 7.65 -2.91 -0.02 3.16 16 20 C 0.02 0.87 5.30 84.66 0.45 1.32 16 21 N -0.92 -53.37 11.32 21.45 0.24 -53.13 16 22 Si 0.97 43.47 29.54 68.60 2.03 45.50 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 24 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 26 H 0.07 0.79 7.13 -2.39 -0.02 0.77 16 27 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 1.33 6.04 -2.39 -0.01 1.31 16 30 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.09 7.69 -2.38 -0.02 1.07 16 33 H 0.15 2.11 7.10 -2.91 -0.02 2.09 16 34 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.10 4.44 6.21 -2.91 -0.02 4.42 16 37 H 0.41 11.01 4.88 -92.71 -0.45 10.56 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.08 2.53 6.43 -2.39 -0.02 2.51 16 40 H 0.08 1.94 6.30 -2.38 -0.02 1.93 16 41 H 0.05 2.22 6.66 -2.39 -0.02 2.20 16 42 H 0.07 3.79 6.07 -2.38 -0.01 3.78 16 43 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 Total: -1.00 -72.39 347.64 5.25 -67.14 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.55 Total: 25.27 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 6.33 Total: 2.79 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -3.60 Total: -106.70 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -0.05 Total: -33.99 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -72.39 5.25 -67.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086280196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.048 kcal (2) G-P(sol) polarization free energy of solvation -72.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds