Wall clock time and date at job start Tue Mar 31 2020 08:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47087 * 2 1 4 4 C 1.50704 * 109.46910 * 119.99227 * 2 1 3 5 5 C 1.38299 * 119.96750 * 299.98273 * 4 2 1 6 6 C 1.38265 * 120.14159 * 179.97438 * 5 4 2 7 7 C 1.38131 * 120.06540 * 359.76645 * 6 5 4 8 8 C 1.38840 * 119.93387 * 0.52845 * 7 6 5 9 9 N 1.39955 * 120.07485 * 179.72151 * 8 7 6 10 10 C 1.34775 * 119.99856 * 214.82102 * 9 8 7 11 11 O 1.21581 * 120.00156 * 355.40535 * 10 9 8 12 12 N 1.34782 * 119.99341 * 175.41415 * 10 9 8 13 13 C 1.46496 * 120.00210 * 359.97438 * 12 10 9 14 14 C 1.46495 * 119.99728 * 179.97438 * 12 10 9 15 15 H 1.09007 * 109.47289 * 359.97438 * 14 12 10 16 16 C 1.53008 * 109.47216 * 119.99591 * 14 12 10 17 17 C 1.50693 * 109.47143 * 239.99590 * 14 12 10 18 18 H 1.07998 * 120.00593 * 0.02562 * 17 14 12 19 19 C 1.37882 * 119.99953 * 179.97438 * 17 14 12 20 20 N 1.31513 * 120.00326 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 119.99814 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.47202 * 60.00425 * 21 19 17 23 23 H 1.48510 * 109.46961 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47424 * 300.00192 * 21 19 17 25 25 C 1.38092 * 119.96032 * 120.00066 * 4 2 1 26 26 H 1.08996 * 109.47581 * 300.00560 * 1 2 3 27 27 H 1.08999 * 109.46847 * 60.00491 * 1 2 3 28 28 H 1.09001 * 109.46976 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47581 * 239.99440 * 2 1 3 30 30 H 1.08997 * 109.46950 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46440 * 299.99283 * 3 2 1 32 32 H 1.08996 * 109.47367 * 59.99309 * 3 2 1 33 33 H 1.08001 * 119.92719 * 359.97438 * 5 4 2 34 34 H 1.07999 * 119.96282 * 180.02562 * 6 5 4 35 35 H 1.08006 * 120.03179 * 180.25579 * 7 6 5 36 36 H 0.96993 * 119.99436 * 34.81822 * 9 8 7 37 37 H 1.09005 * 109.47344 * 270.00378 * 13 12 10 38 38 H 1.09005 * 109.47271 * 30.00501 * 13 12 10 39 39 H 1.09001 * 109.47313 * 150.00538 * 13 12 10 40 40 H 1.09004 * 109.46650 * 300.00195 * 16 14 12 41 41 H 1.08997 * 109.46895 * 59.99870 * 16 14 12 42 42 H 1.08997 * 109.46970 * 180.02562 * 16 14 12 43 43 H 0.96995 * 120.00337 * 179.97438 * 20 19 17 44 44 H 1.07996 * 120.03973 * 0.02759 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.6981 -0.2368 2.4863 6 6 2.1565 -0.8860 3.6178 7 6 2.9462 -2.0128 3.4970 8 6 3.2886 -2.4871 2.2378 9 7 4.0934 -3.6252 2.1120 10 6 4.9792 -3.7156 1.1003 11 8 5.0213 -2.8479 0.2498 12 7 5.8183 -4.7682 1.0315 13 6 5.7678 -5.8135 2.0566 14 6 6.7808 -4.8668 -0.0685 15 1 6.6703 -4.0048 -0.7265 16 6 8.2017 -4.8975 0.4983 17 6 6.5239 -6.1300 -0.8490 18 1 5.7235 -6.7929 -0.5554 19 6 7.3102 -6.4391 -1.9387 20 7 8.2847 -5.6317 -2.2966 21 14 6.9922 -8.0053 -2.9057 22 1 5.6129 -7.9764 -3.4553 23 1 7.9679 -8.1053 -4.0208 24 1 7.1434 -9.1798 -2.0096 25 6 2.8262 -1.8330 1.1031 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9562 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.0776 0.6419 2.5833 34 1 1.8934 -0.5140 4.5969 35 1 3.3006 -2.5219 4.3812 36 1 4.0136 -4.3488 2.7530 37 1 6.4469 -5.5579 2.8700 38 1 4.7518 -5.8944 2.4433 39 1 6.0670 -6.7660 1.6193 40 1 8.3874 -3.9838 1.0629 41 1 8.3119 -5.7597 1.1560 42 1 8.9178 -4.9705 -0.3201 43 1 8.8380 -5.8492 -3.0630 44 1 3.0875 -2.2018 0.1223 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086281088.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:49 Heat of formation + Delta-G solvation = -7.675469 kcal Electronic energy + Delta-G solvation = -23288.288173 eV Core-core repulsion = 20012.518041 eV Total energy + Delta-G solvation = -3275.770132 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.30247 -38.80533 -36.01411 -35.18911 -33.88435 -32.71774 -30.16410 -29.60263 -28.35125 -27.13878 -26.15290 -25.22266 -23.22560 -22.91498 -21.27805 -19.79722 -19.12514 -17.59549 -16.76998 -16.34603 -15.91523 -15.41095 -15.10258 -14.71888 -14.24354 -14.10909 -13.67245 -13.52236 -13.33436 -13.10489 -12.78121 -12.53896 -12.36916 -12.05338 -12.02145 -11.75354 -11.55969 -11.48263 -11.16550 -11.05945 -10.87020 -10.73999 -10.68523 -10.62678 -10.27852 -10.17266 -9.90077 -9.33899 -9.12743 -8.53717 -8.43099 -7.92928 -7.51522 -6.07850 -4.16056 1.50812 1.63551 3.21021 3.27308 3.32724 3.35560 3.70511 4.09313 4.34765 4.52532 4.75547 4.87893 5.14721 5.22721 5.23268 5.28794 5.38174 5.54528 5.56369 5.59838 5.68100 5.79868 5.85380 5.93885 5.94982 5.97794 6.18222 6.23809 6.26226 6.30937 6.54880 6.56254 6.73014 6.75300 6.82010 6.92470 7.03156 7.17829 7.35491 7.46330 7.67504 7.82453 8.06309 8.20554 8.62924 8.84603 9.21038 9.50892 10.97376 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019898 B = 0.003857 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.836765 B = 7258.326880 C = 7949.627788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.058 4.058 3 C -0.142 4.142 4 C -0.059 4.059 5 C -0.143 4.143 6 C -0.102 4.102 7 C -0.162 4.162 8 C 0.181 3.819 9 N -0.697 5.697 10 C 0.696 3.304 11 O -0.578 6.578 12 N -0.604 5.604 13 C 0.084 3.916 14 C 0.273 3.727 15 H 0.065 0.935 16 C -0.146 4.146 17 C -0.528 4.528 18 H 0.059 0.941 19 C 0.066 3.934 20 N -0.887 5.887 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 C -0.118 4.118 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.402 0.598 37 H 0.043 0.957 38 H 0.046 0.954 39 H 0.085 0.915 40 H 0.011 0.989 41 H 0.029 0.971 42 H 0.094 0.906 43 H 0.264 0.736 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.223 7.512 10.928 18.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.077 4.077 3 C -0.199 4.199 4 C -0.060 4.060 5 C -0.162 4.162 6 C -0.120 4.120 7 C -0.183 4.183 8 C 0.085 3.915 9 N -0.346 5.346 10 C 0.398 3.602 11 O -0.456 6.456 12 N -0.338 5.338 13 C -0.060 4.060 14 C 0.172 3.828 15 H 0.083 0.917 16 C -0.205 4.205 17 C -0.567 4.567 18 H 0.077 0.923 19 C -0.137 4.137 20 N -0.525 5.525 21 Si 0.727 3.273 22 H -0.203 1.203 23 H -0.211 1.211 24 H -0.203 1.203 25 C -0.139 4.139 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.238 0.762 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.104 0.896 40 H 0.030 0.970 41 H 0.048 0.952 42 H 0.113 0.887 43 H 0.074 0.926 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.908 8.067 10.108 17.580 hybrid contribution -0.048 -1.411 -0.037 1.412 sum -11.956 6.657 10.071 16.991 Atomic orbital electron populations 1.21838 0.94558 1.01900 1.01552 1.20128 0.95609 0.96072 0.95885 1.21832 1.01618 0.95022 1.01441 1.19725 0.96661 0.95079 0.94555 1.20821 1.02534 1.00856 0.91960 1.20784 0.97847 0.95148 0.98257 1.20815 1.03406 0.98595 0.95507 1.17576 0.91982 0.88440 0.93545 1.42981 1.39714 1.19931 1.31978 1.15998 0.79302 0.83321 0.81559 1.90860 1.73076 1.41114 1.40523 1.47611 1.37380 1.20234 1.28585 1.21544 0.99209 0.93867 0.91365 1.18891 0.82937 0.98716 0.82216 0.91716 1.22100 1.00841 0.96716 1.00841 1.21291 1.16137 1.06637 1.12594 0.92329 1.24881 0.94905 0.97026 0.96880 1.69868 1.19099 1.36670 1.26858 0.86550 0.78103 0.83152 0.79527 1.20259 1.21144 1.20257 1.21358 0.96676 0.96388 0.99440 0.92633 0.92574 0.92588 0.90176 0.92306 0.92580 0.92687 0.86600 0.86237 0.86261 0.76153 0.93830 0.93585 0.89623 0.97005 0.95189 0.88748 0.92593 0.83929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.01 37.16 0.33 -1.07 16 2 C -0.06 -0.71 3.09 -91.77 -0.28 -0.99 16 3 C -0.14 -1.54 9.01 37.16 0.33 -1.20 16 4 C -0.06 -0.84 4.78 -104.65 -0.50 -1.34 16 5 C -0.14 -1.73 8.71 -39.55 -0.34 -2.08 16 6 C -0.10 -1.19 10.04 -39.61 -0.40 -1.59 16 7 C -0.16 -2.12 9.97 -39.40 -0.39 -2.51 16 8 C 0.18 2.91 6.30 -83.68 -0.53 2.39 16 9 N -0.70 -11.62 5.22 -14.22 -0.07 -11.70 16 10 C 0.70 14.92 8.13 -86.91 -0.71 14.21 16 11 O -0.58 -14.53 13.10 5.29 0.07 -14.46 16 12 N -0.60 -12.94 2.75 -181.00 -0.50 -13.44 16 13 C 0.08 1.39 9.24 59.84 0.55 1.94 16 14 C 0.27 6.98 2.64 -69.08 -0.18 6.79 16 15 H 0.07 1.93 6.90 -51.92 -0.36 1.57 16 16 C -0.15 -3.52 8.97 37.16 0.33 -3.18 16 17 C -0.53 -14.17 7.99 -34.44 -0.28 -14.44 16 18 H 0.06 1.54 7.33 -52.49 -0.38 1.16 16 19 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 20 N -0.89 -24.99 11.32 55.43 0.63 -24.37 16 21 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 C -0.12 -2.01 8.32 -39.39 -0.33 -2.34 16 26 H 0.05 0.50 7.39 -51.93 -0.38 0.11 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.07 7.87 -51.93 -0.41 0.66 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.53 7.38 -51.93 -0.38 0.15 16 33 H 0.12 1.15 7.09 -52.49 -0.37 0.78 16 34 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 36 H 0.40 5.38 6.52 -40.82 -0.27 5.11 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.60 6.30 -51.93 -0.33 0.27 16 39 H 0.09 1.50 7.02 -51.93 -0.36 1.13 16 40 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 42 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.14 2.83 6.11 -52.49 -0.32 2.51 16 LS Contribution 351.66 15.07 5.30 5.30 Total: -1.00 -30.98 351.66 -8.87 -39.86 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -6.80 Total: 6.64 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -2.48 Total: -3.73 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: 0.06 Total: -49.51 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.07 Total: -14.46 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.98 -8.87 -39.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086281088.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.181 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds