Wall clock time and date at job start Tue Mar 31 2020 08:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47087 * 2 1 4 4 C 1.50704 * 109.46910 * 119.99227 * 2 1 3 5 5 C 1.38299 * 119.96750 * 299.98273 * 4 2 1 6 6 C 1.38265 * 120.14159 * 179.97438 * 5 4 2 7 7 C 1.38131 * 120.06540 * 359.76645 * 6 5 4 8 8 C 1.38840 * 119.93387 * 0.52845 * 7 6 5 9 9 N 1.39955 * 120.07485 * 179.72151 * 8 7 6 10 10 C 1.34775 * 119.99856 * 214.82102 * 9 8 7 11 11 O 1.21581 * 120.00156 * 355.40535 * 10 9 8 12 12 N 1.34782 * 119.99341 * 175.41415 * 10 9 8 13 13 C 1.46496 * 120.00210 * 359.97438 * 12 10 9 14 14 C 1.46495 * 119.99728 * 179.97438 * 12 10 9 15 15 H 1.09007 * 109.47289 * 359.97438 * 14 12 10 16 16 C 1.53008 * 109.47216 * 119.99591 * 14 12 10 17 17 C 1.50693 * 109.47143 * 239.99590 * 14 12 10 18 18 H 1.07998 * 120.00593 * 0.02562 * 17 14 12 19 19 C 1.37882 * 119.99953 * 179.97438 * 17 14 12 20 20 N 1.31513 * 120.00326 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 119.99814 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.47202 * 60.00425 * 21 19 17 23 23 H 1.48510 * 109.46961 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47424 * 300.00192 * 21 19 17 25 25 C 1.38092 * 119.96032 * 120.00066 * 4 2 1 26 26 H 1.08996 * 109.47581 * 300.00560 * 1 2 3 27 27 H 1.08999 * 109.46847 * 60.00491 * 1 2 3 28 28 H 1.09001 * 109.46976 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47581 * 239.99440 * 2 1 3 30 30 H 1.08997 * 109.46950 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46440 * 299.99283 * 3 2 1 32 32 H 1.08996 * 109.47367 * 59.99309 * 3 2 1 33 33 H 1.08001 * 119.92719 * 359.97438 * 5 4 2 34 34 H 1.07999 * 119.96282 * 180.02562 * 6 5 4 35 35 H 1.08006 * 120.03179 * 180.25579 * 7 6 5 36 36 H 0.96993 * 119.99436 * 34.81822 * 9 8 7 37 37 H 1.09005 * 109.47344 * 270.00378 * 13 12 10 38 38 H 1.09005 * 109.47271 * 30.00501 * 13 12 10 39 39 H 1.09001 * 109.47313 * 150.00538 * 13 12 10 40 40 H 1.09004 * 109.46650 * 300.00195 * 16 14 12 41 41 H 1.08997 * 109.46895 * 59.99870 * 16 14 12 42 42 H 1.08997 * 109.46970 * 180.02562 * 16 14 12 43 43 H 0.96995 * 120.00337 * 179.97438 * 20 19 17 44 44 H 1.07996 * 120.03973 * 0.02759 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.6981 -0.2368 2.4863 6 6 2.1565 -0.8860 3.6178 7 6 2.9462 -2.0128 3.4970 8 6 3.2886 -2.4871 2.2378 9 7 4.0934 -3.6252 2.1120 10 6 4.9792 -3.7156 1.1003 11 8 5.0213 -2.8479 0.2498 12 7 5.8183 -4.7682 1.0315 13 6 5.7678 -5.8135 2.0566 14 6 6.7808 -4.8668 -0.0685 15 1 6.6703 -4.0048 -0.7265 16 6 8.2017 -4.8975 0.4983 17 6 6.5239 -6.1300 -0.8490 18 1 5.7235 -6.7929 -0.5554 19 6 7.3102 -6.4391 -1.9387 20 7 8.2847 -5.6317 -2.2966 21 14 6.9922 -8.0053 -2.9057 22 1 5.6129 -7.9764 -3.4553 23 1 7.9679 -8.1053 -4.0208 24 1 7.1434 -9.1798 -2.0096 25 6 2.8262 -1.8330 1.1031 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9562 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.0776 0.6419 2.5833 34 1 1.8934 -0.5140 4.5969 35 1 3.3006 -2.5219 4.3812 36 1 4.0136 -4.3488 2.7530 37 1 6.4469 -5.5579 2.8700 38 1 4.7518 -5.8944 2.4433 39 1 6.0670 -6.7660 1.6193 40 1 8.3874 -3.9838 1.0629 41 1 8.3119 -5.7597 1.1560 42 1 8.9178 -4.9705 -0.3201 43 1 8.8380 -5.8492 -3.0630 44 1 3.0875 -2.2018 0.1223 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086281088.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:47 Heat of formation + Delta-G solvation = -25.146750 kcal Electronic energy + Delta-G solvation = -23289.045784 eV Core-core repulsion = 20012.518041 eV Total energy + Delta-G solvation = -3276.527743 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 3.79 seconds Orbital eigenvalues (eV) -41.72472 -40.08320 -37.49684 -36.65178 -35.29714 -34.51810 -31.61050 -30.98207 -29.65719 -27.97520 -27.64109 -27.30771 -24.43015 -24.11411 -22.79072 -21.01291 -20.70707 -19.09092 -18.46739 -17.81918 -17.36038 -16.75670 -16.62748 -16.28409 -15.73530 -15.30622 -14.95801 -14.70232 -14.47616 -14.39808 -14.32525 -14.07139 -13.55598 -13.37892 -13.16313 -12.97978 -12.92625 -12.88895 -12.75866 -12.65871 -12.62450 -12.20357 -12.12484 -12.09184 -11.70794 -11.60643 -11.24855 -11.21002 -10.89069 -10.52448 -9.62183 -9.47088 -8.91216 -8.14842 -6.31836 0.42557 0.54162 1.41054 1.43546 1.50879 1.75111 2.15524 2.41620 2.93858 3.06762 3.12957 3.75032 3.94516 4.20524 4.29876 4.32254 4.32983 4.45614 4.53361 4.61589 4.66577 4.71049 4.77730 4.82115 4.87633 4.93371 4.96679 4.98599 5.04650 5.09328 5.25377 5.31341 5.35470 5.40150 5.47108 5.50478 5.58476 5.63668 5.65953 5.83526 5.97194 6.14186 6.20309 6.25332 6.75268 7.06799 7.35444 7.61781 8.89266 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019898 B = 0.003857 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.836765 B = 7258.326880 C = 7949.627788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.063 4.063 3 C -0.137 4.137 4 C -0.067 4.067 5 C -0.136 4.136 6 C -0.093 4.093 7 C -0.155 4.155 8 C 0.150 3.850 9 N -0.677 5.677 10 C 0.689 3.311 11 O -0.628 6.628 12 N -0.612 5.612 13 C 0.080 3.920 14 C 0.278 3.722 15 H 0.008 0.992 16 C -0.131 4.131 17 C -0.540 4.540 18 H 0.061 0.939 19 C 0.016 3.984 20 N -0.917 5.917 21 Si 0.966 3.034 22 H -0.279 1.279 23 H -0.283 1.283 24 H -0.261 1.261 25 C -0.152 4.152 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.148 0.852 34 H 0.162 0.838 35 H 0.149 0.851 36 H 0.418 0.582 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.017 0.983 41 H 0.048 0.952 42 H 0.069 0.931 43 H 0.265 0.735 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.174 7.529 13.886 21.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.082 4.082 3 C -0.194 4.194 4 C -0.067 4.067 5 C -0.154 4.154 6 C -0.111 4.111 7 C -0.175 4.175 8 C 0.055 3.945 9 N -0.328 5.328 10 C 0.391 3.609 11 O -0.509 6.509 12 N -0.346 5.346 13 C -0.062 4.062 14 C 0.176 3.824 15 H 0.026 0.974 16 C -0.189 4.189 17 C -0.579 4.579 18 H 0.079 0.921 19 C -0.184 4.184 20 N -0.556 5.556 21 Si 0.791 3.209 22 H -0.205 1.205 23 H -0.209 1.209 24 H -0.185 1.185 25 C -0.173 4.173 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.166 0.834 34 H 0.179 0.821 35 H 0.166 0.834 36 H 0.258 0.742 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.036 0.964 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.894 8.061 13.136 20.750 hybrid contribution 0.487 -1.312 -0.920 1.675 sum -13.407 6.750 12.216 19.353 Atomic orbital electron populations 1.21791 0.92358 1.01818 1.03158 1.20177 0.97391 0.96448 0.94163 1.21807 1.00164 0.94271 1.03204 1.19942 0.96131 0.94225 0.96429 1.21200 1.01899 1.01380 0.90950 1.21303 0.95994 0.93881 0.99908 1.21138 1.02728 0.98886 0.94758 1.17875 0.93083 0.88874 0.94703 1.42626 1.38487 1.20904 1.30784 1.16208 0.79858 0.82757 0.82057 1.90834 1.74446 1.42937 1.42641 1.47471 1.36753 1.21605 1.28740 1.21805 1.02183 0.91784 0.90469 1.18460 0.84827 0.96006 0.83096 0.97407 1.21876 0.99148 0.97770 1.00139 1.21548 1.16195 1.06936 1.13213 0.92072 1.25732 0.94629 1.00195 0.97813 1.70016 1.19915 1.38364 1.27272 0.85500 0.77587 0.79650 0.78199 1.20472 1.20851 1.18523 1.21191 0.99357 0.98677 0.98052 0.90667 0.91276 0.93521 0.93149 0.94562 0.91131 0.90580 0.83432 0.82088 0.83361 0.74171 0.91455 0.89981 0.90564 0.96404 0.93259 0.91233 0.92589 0.88508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.01 71.98 0.65 -1.84 16 2 C -0.06 -1.57 3.09 -11.54 -0.04 -1.60 16 3 C -0.14 -2.89 9.01 71.98 0.65 -2.24 16 4 C -0.07 -1.87 4.78 -19.88 -0.10 -1.97 16 5 C -0.14 -2.88 8.71 22.29 0.19 -2.69 16 6 C -0.09 -1.78 10.04 22.25 0.22 -1.56 16 7 C -0.15 -3.60 9.97 22.39 0.22 -3.37 16 8 C 0.15 4.82 6.30 38.15 0.24 5.06 16 9 N -0.68 -22.65 5.22 -317.17 -1.65 -24.30 16 10 C 0.69 30.86 8.13 179.05 1.45 32.32 16 11 O -0.63 -34.23 13.10 -3.97 -0.05 -34.28 16 12 N -0.61 -26.84 2.75 -844.84 -2.33 -29.17 16 13 C 0.08 2.52 9.24 127.77 1.18 3.70 16 14 C 0.28 14.90 2.64 44.25 0.12 15.01 16 15 H 0.01 0.51 6.90 -2.38 -0.02 0.49 16 16 C -0.13 -6.44 8.97 71.98 0.65 -5.80 16 17 C -0.54 -29.78 7.99 25.60 0.20 -29.57 16 18 H 0.06 3.26 7.33 -2.91 -0.02 3.23 16 19 C 0.02 0.89 5.30 84.66 0.45 1.34 16 20 N -0.92 -53.47 11.32 21.45 0.24 -53.23 16 21 Si 0.97 43.38 29.54 68.60 2.03 45.41 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 25 C -0.15 -5.49 8.32 22.39 0.19 -5.31 16 26 H 0.07 1.10 7.39 -2.39 -0.02 1.08 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 1.50 7.87 -2.39 -0.02 1.48 16 30 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.26 7.38 -2.39 -0.02 1.24 16 33 H 0.15 2.21 7.09 -2.91 -0.02 2.19 16 34 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 35 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.42 10.51 6.52 -92.71 -0.60 9.91 16 37 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.08 1.95 6.30 -2.38 -0.02 1.94 16 39 H 0.08 2.57 7.02 -2.39 -0.02 2.55 16 40 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.05 2.18 7.67 -2.39 -0.02 2.16 16 42 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 43 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.10 4.35 6.11 -2.91 -0.02 4.33 16 Total: -1.00 -73.58 351.66 4.91 -68.67 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 0.39 Total: 25.41 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 6.28 Total: 1.48 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -3.74 Total: -106.70 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -0.05 Total: -34.28 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -73.58 4.91 -68.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086281088.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.525 kcal (2) G-P(sol) polarization free energy of solvation -73.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.79 seconds