Wall clock time and date at job start Tue Mar 31 2020 06:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 115.56600 * 2 1 4 4 C 1.53003 * 117.49361 * 145.69042 * 2 1 3 5 5 C 1.52999 * 60.00009 * 107.48824 * 4 2 1 6 6 H 1.09002 * 117.49400 * 252.48310 * 5 4 2 7 7 C 1.50696 * 117.49758 * 107.48875 * 5 4 2 8 8 C 1.34519 * 125.78569 * 171.39000 * 7 5 4 9 9 C 1.41384 * 106.83970 * 179.75019 * 8 7 5 10 10 C 1.34520 * 106.84161 * 0.37325 * 9 8 7 11 11 C 1.50692 * 125.79039 * 179.89369 * 10 9 8 12 12 N 1.46903 * 109.47402 * 89.69094 * 11 10 9 13 13 C 1.46897 * 110.99372 * 294.29681 * 12 11 10 14 14 C 1.53248 * 109.33600 * 172.74781 * 13 12 11 15 15 N 1.47073 * 108.52102 * 53.83329 * 14 13 12 16 16 C 1.36932 * 120.88094 * 128.79163 * 15 14 13 17 17 H 1.08006 * 120.00148 * 206.59993 * 16 15 14 18 18 C 1.38811 * 120.00098 * 26.60507 * 16 15 14 19 19 N 1.31615 * 120.00191 * 16.99122 * 18 16 15 20 20 Si 1.86806 * 119.99939 * 196.99813 * 18 16 15 21 21 H 1.48506 * 109.46896 * 89.99498 * 20 18 16 22 22 H 1.48495 * 109.47070 * 209.99465 * 20 18 16 23 23 H 1.48500 * 109.47053 * 329.99709 * 20 18 16 24 24 C 1.47084 * 118.23531 * 308.81274 * 15 14 13 25 25 C 1.46895 * 111.00077 * 170.00144 * 12 11 10 26 26 O 1.34298 * 125.79328 * 351.36592 * 7 5 4 27 27 H 1.09000 * 109.47439 * 205.68810 * 1 2 3 28 28 H 1.08998 * 109.46831 * 325.69252 * 1 2 3 29 29 H 1.09003 * 109.46815 * 85.68692 * 1 2 3 30 30 H 1.08995 * 117.50035 * 359.97438 * 4 2 1 31 31 H 1.09001 * 117.51081 * 214.97341 * 4 2 1 32 32 H 1.07997 * 126.57938 * 359.97438 * 8 7 5 33 33 H 1.07992 * 126.58181 * 180.23207 * 9 8 7 34 34 H 1.09007 * 109.47180 * 209.68965 * 11 10 9 35 35 H 1.09001 * 109.47012 * 329.68248 * 11 10 9 36 36 H 1.09001 * 109.49951 * 292.70777 * 13 12 11 37 37 H 1.09002 * 109.49328 * 52.79223 * 13 12 11 38 38 H 1.08996 * 109.62722 * 294.11755 * 14 13 12 39 39 H 1.08998 * 109.62575 * 173.54487 * 14 13 12 40 40 H 0.97003 * 120.00248 * 180.02562 * 19 18 16 41 41 H 1.08991 * 109.62739 * 291.47242 * 24 15 14 42 42 H 1.09002 * 109.78341 * 170.98920 * 24 15 14 43 43 H 1.08999 * 109.49278 * 307.20873 * 25 12 11 44 44 H 1.09004 * 109.49581 * 67.28547 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2364 -1.1211 0.7650 5 6 2.2364 -1.1211 -0.7650 6 1 1.6114 -1.8588 -1.2682 7 6 3.5293 -0.7813 -1.4607 8 6 3.7639 -0.8885 -2.7809 9 6 5.0944 -0.4617 -2.9965 10 6 5.5960 -0.1271 -1.7940 11 6 6.9893 0.3835 -1.5314 12 7 7.0005 1.8491 -1.6304 13 6 6.7134 2.2861 -3.0032 14 6 6.5552 3.8102 -3.0279 15 7 7.7508 4.4140 -2.4203 16 6 8.4448 5.4020 -3.0663 17 1 9.4971 5.5414 -2.8672 18 6 7.7958 6.2244 -3.9769 19 7 6.4813 6.2917 -3.9825 20 14 8.7879 7.2355 -5.1947 21 1 9.0006 6.4472 -6.4352 22 1 8.0496 8.4819 -5.5207 23 1 10.1024 7.5809 -4.5962 24 6 8.1815 3.9279 -1.1006 25 6 8.2757 2.3993 -1.1518 26 8 4.6424 -0.3196 -0.8680 27 1 -0.3634 -0.9261 0.4455 28 1 -0.3633 0.8489 0.5792 29 1 -0.3633 0.0773 -1.0248 30 1 1.6111 -1.8583 1.2686 31 1 3.1715 -0.8756 1.2684 32 1 3.0681 -1.2311 -3.5325 33 1 5.6099 -0.4156 -3.9443 34 1 7.3034 0.0845 -0.5313 35 1 7.6747 -0.0358 -2.2680 36 1 7.5355 1.9952 -3.6571 37 1 5.7909 1.8191 -3.3482 38 1 5.6710 4.0958 -2.4582 39 1 6.4562 4.1514 -4.0584 40 1 6.0278 6.8661 -4.6192 41 1 7.4536 4.2250 -0.3456 42 1 9.1570 4.3468 -0.8535 43 1 8.4863 2.0143 -0.1540 44 1 9.0761 2.1067 -1.8314 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092936328.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:39 Heat of formation + Delta-G solvation = 70.663559 kcal Electronic energy + Delta-G solvation = -23240.800280 eV Core-core repulsion = 19968.427183 eV Total energy + Delta-G solvation = -3272.373097 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -42.46278 -38.18457 -37.74800 -34.58566 -32.83814 -31.68904 -30.18635 -29.90511 -28.64922 -26.83883 -24.77179 -22.86189 -22.55892 -21.71190 -21.55480 -20.82078 -19.75776 -19.06505 -16.94269 -16.78143 -15.98268 -15.26556 -15.00006 -14.62433 -14.37294 -14.31543 -13.74813 -13.56455 -13.28966 -13.22966 -13.18455 -13.00405 -12.65822 -12.36544 -12.08621 -11.89830 -11.63102 -11.57048 -11.36231 -11.06109 -10.74657 -10.70337 -10.45002 -10.29958 -10.23592 -10.04256 -9.78944 -9.63813 -9.54578 -8.49489 -8.09962 -7.81564 -6.65220 -5.75891 -3.17486 1.78516 2.70517 2.97006 3.39000 3.45631 3.47091 3.69092 4.32621 4.46169 4.53196 4.61808 4.67450 4.91428 5.12544 5.18981 5.20632 5.40098 5.41795 5.45404 5.47466 5.55303 5.56184 5.57981 5.81675 5.86493 5.89986 5.93475 5.99633 6.11010 6.12941 6.15313 6.23440 6.28747 6.33509 6.55977 6.67371 6.72024 6.94043 7.24948 7.36768 7.54020 7.66693 7.71666 7.83316 8.45285 9.23069 9.86497 10.45279 11.32843 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.021148 B = 0.003542 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.689792 B = 7902.499779 C = 8343.436738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.140 4.140 3 H 0.110 0.890 4 C -0.167 4.167 5 C -0.077 4.077 6 H 0.131 0.869 7 C 0.011 3.989 8 C -0.202 4.202 9 C -0.207 4.207 10 C 0.014 3.986 11 C 0.129 3.871 12 N -0.530 5.530 13 C 0.031 3.969 14 C 0.180 3.820 15 N -0.596 5.596 16 C -0.253 4.253 17 H 0.066 0.934 18 C 0.001 3.999 19 N -0.903 5.903 20 Si 0.903 3.097 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.149 3.851 25 C 0.045 3.955 26 O -0.166 6.166 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.025 0.975 37 H 0.066 0.934 38 H 0.025 0.975 39 H 0.089 0.911 40 H 0.254 0.746 41 H 0.025 0.975 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.443 -16.819 6.317 19.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 H 0.128 0.872 4 C -0.204 4.204 5 C -0.095 4.095 6 H 0.148 0.852 7 C -0.039 4.039 8 C -0.221 4.221 9 C -0.227 4.227 10 C -0.037 4.037 11 C 0.001 3.999 12 N -0.255 5.255 13 C -0.098 4.098 14 C 0.054 3.946 15 N -0.319 5.319 16 C -0.382 4.382 17 H 0.084 0.916 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.733 3.267 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.205 1.205 24 C 0.022 3.978 25 C -0.084 4.084 26 O -0.062 6.062 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.107 0.893 40 H 0.064 0.936 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.860 -16.436 6.831 19.457 hybrid contribution 1.053 0.181 -1.516 1.854 sum -6.807 -16.256 5.315 18.407 Atomic orbital electron populations 1.21380 0.92247 1.02095 1.02195 1.22536 0.95392 0.95098 1.02834 0.87174 1.23169 1.03160 1.01424 0.92643 1.20520 0.92054 1.03005 0.93939 0.85161 1.21252 0.87322 1.03671 0.91690 1.21393 0.97436 1.08052 0.95207 1.21538 0.95762 1.07228 0.98190 1.22262 0.91536 1.02932 0.86968 1.20487 0.87178 0.90018 1.02209 1.61956 1.33565 1.05258 1.24724 1.23020 0.99148 1.00992 0.86668 1.20841 0.88547 0.85325 0.99887 1.44139 1.30904 1.41620 1.15236 1.19211 0.91653 1.07887 1.19460 0.91591 1.25030 0.95461 0.97629 1.01607 1.70036 1.06612 1.40840 1.37243 0.86282 0.79367 0.79421 0.81656 1.21513 1.21742 1.20471 1.20962 0.98041 0.89769 0.88990 1.22651 0.88701 0.98755 0.98266 1.83911 1.19526 1.65069 1.37694 0.92471 0.91723 0.91909 0.88153 0.88128 0.83833 0.83740 0.89728 0.92185 0.95633 0.91522 0.95678 0.89332 0.93623 0.95661 0.92467 0.91832 0.95149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.19 37.16 0.38 -0.59 16 2 C -0.14 -1.45 6.11 -90.62 -0.55 -2.00 16 3 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 4 C -0.17 -1.61 9.81 -26.73 -0.26 -1.87 16 5 C -0.08 -0.82 5.96 -91.77 -0.55 -1.37 16 6 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 7 C 0.01 0.15 6.80 -35.62 -0.24 -0.09 16 8 C -0.20 -2.78 10.81 -39.70 -0.43 -3.21 16 9 C -0.21 -3.08 9.20 -39.70 -0.37 -3.44 16 10 C 0.01 0.22 6.24 -35.63 -0.22 0.00 16 11 C 0.13 1.96 5.50 -4.98 -0.03 1.93 16 12 N -0.53 -9.84 4.62 -235.76 -1.09 -10.93 16 13 C 0.03 0.62 5.43 -3.70 -0.02 0.60 16 14 C 0.18 4.51 5.42 -3.60 -0.02 4.49 16 15 N -0.60 -15.44 3.04 -172.02 -0.52 -15.96 16 16 C -0.25 -7.05 9.63 -15.06 -0.15 -7.20 16 17 H 0.07 1.80 7.88 -52.48 -0.41 1.39 16 18 C 0.00 0.03 4.94 -17.43 -0.09 -0.05 16 19 N -0.90 -26.67 11.15 55.49 0.62 -26.05 16 20 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.15 3.24 6.69 -3.60 -0.02 3.21 16 25 C 0.05 0.82 5.62 -3.70 -0.02 0.80 16 26 O -0.17 -2.65 10.36 5.71 0.06 -2.60 16 27 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.10 0.75 8.05 -51.93 -0.42 0.33 16 31 H 0.10 1.09 7.96 -51.93 -0.41 0.67 16 32 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 34 H 0.08 1.15 7.97 -51.93 -0.41 0.74 16 35 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 1.30 5.89 -51.93 -0.31 1.00 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 2.44 6.12 -51.93 -0.32 2.12 16 40 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 1.18 7.96 -51.93 -0.41 0.76 16 43 H 0.06 0.97 7.99 -51.93 -0.41 0.56 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 353.82 15.07 5.33 5.33 Total: -1.00 -31.12 353.82 -10.52 -41.64 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -7.31 Total: 0.48 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -2.59 Total: -8.79 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.99 Total: -52.94 kcal Atomic # 8 Polarization: -2.65 SS G_CDS: 0.06 Total: -2.60 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.12 -10.52 -41.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936328.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.303 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds