Wall clock time and date at job start Tue Mar 31 2020 06:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 115.56600 * 2 1 4 4 C 1.53003 * 117.49361 * 145.69042 * 2 1 3 5 5 C 1.52999 * 60.00009 * 107.48824 * 4 2 1 6 6 H 1.09002 * 117.49400 * 252.48310 * 5 4 2 7 7 C 1.50696 * 117.49758 * 107.48875 * 5 4 2 8 8 C 1.34519 * 125.78569 * 171.39000 * 7 5 4 9 9 C 1.41384 * 106.83970 * 179.75019 * 8 7 5 10 10 C 1.34520 * 106.84161 * 0.37325 * 9 8 7 11 11 C 1.50692 * 125.79039 * 179.89369 * 10 9 8 12 12 N 1.46903 * 109.47402 * 89.69094 * 11 10 9 13 13 C 1.46897 * 110.99372 * 294.29681 * 12 11 10 14 14 C 1.53248 * 109.33600 * 172.74781 * 13 12 11 15 15 N 1.47073 * 108.52102 * 53.83329 * 14 13 12 16 16 C 1.36932 * 120.88094 * 128.79163 * 15 14 13 17 17 H 1.08006 * 120.00148 * 206.59993 * 16 15 14 18 18 C 1.38811 * 120.00098 * 26.60507 * 16 15 14 19 19 N 1.31615 * 120.00191 * 16.99122 * 18 16 15 20 20 Si 1.86806 * 119.99939 * 196.99813 * 18 16 15 21 21 H 1.48506 * 109.46896 * 89.99498 * 20 18 16 22 22 H 1.48495 * 109.47070 * 209.99465 * 20 18 16 23 23 H 1.48500 * 109.47053 * 329.99709 * 20 18 16 24 24 C 1.47084 * 118.23531 * 308.81274 * 15 14 13 25 25 C 1.46895 * 111.00077 * 170.00144 * 12 11 10 26 26 O 1.34298 * 125.79328 * 351.36592 * 7 5 4 27 27 H 1.09000 * 109.47439 * 205.68810 * 1 2 3 28 28 H 1.08998 * 109.46831 * 325.69252 * 1 2 3 29 29 H 1.09003 * 109.46815 * 85.68692 * 1 2 3 30 30 H 1.08995 * 117.50035 * 359.97438 * 4 2 1 31 31 H 1.09001 * 117.51081 * 214.97341 * 4 2 1 32 32 H 1.07997 * 126.57938 * 359.97438 * 8 7 5 33 33 H 1.07992 * 126.58181 * 180.23207 * 9 8 7 34 34 H 1.09007 * 109.47180 * 209.68965 * 11 10 9 35 35 H 1.09001 * 109.47012 * 329.68248 * 11 10 9 36 36 H 1.09001 * 109.49951 * 292.70777 * 13 12 11 37 37 H 1.09002 * 109.49328 * 52.79223 * 13 12 11 38 38 H 1.08996 * 109.62722 * 294.11755 * 14 13 12 39 39 H 1.08998 * 109.62575 * 173.54487 * 14 13 12 40 40 H 0.97003 * 120.00248 * 180.02562 * 19 18 16 41 41 H 1.08991 * 109.62739 * 291.47242 * 24 15 14 42 42 H 1.09002 * 109.78341 * 170.98920 * 24 15 14 43 43 H 1.08999 * 109.49278 * 307.20873 * 25 12 11 44 44 H 1.09004 * 109.49581 * 67.28547 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2364 -1.1211 0.7650 5 6 2.2364 -1.1211 -0.7650 6 1 1.6114 -1.8588 -1.2682 7 6 3.5293 -0.7813 -1.4607 8 6 3.7639 -0.8885 -2.7809 9 6 5.0944 -0.4617 -2.9965 10 6 5.5960 -0.1271 -1.7940 11 6 6.9893 0.3835 -1.5314 12 7 7.0005 1.8491 -1.6304 13 6 6.7134 2.2861 -3.0032 14 6 6.5552 3.8102 -3.0279 15 7 7.7508 4.4140 -2.4203 16 6 8.4448 5.4020 -3.0663 17 1 9.4971 5.5414 -2.8672 18 6 7.7958 6.2244 -3.9769 19 7 6.4813 6.2917 -3.9825 20 14 8.7879 7.2355 -5.1947 21 1 9.0006 6.4472 -6.4352 22 1 8.0496 8.4819 -5.5207 23 1 10.1024 7.5809 -4.5962 24 6 8.1815 3.9279 -1.1006 25 6 8.2757 2.3993 -1.1518 26 8 4.6424 -0.3196 -0.8680 27 1 -0.3634 -0.9261 0.4455 28 1 -0.3633 0.8489 0.5792 29 1 -0.3633 0.0773 -1.0248 30 1 1.6111 -1.8583 1.2686 31 1 3.1715 -0.8756 1.2684 32 1 3.0681 -1.2311 -3.5325 33 1 5.6099 -0.4156 -3.9443 34 1 7.3034 0.0845 -0.5313 35 1 7.6747 -0.0358 -2.2680 36 1 7.5355 1.9952 -3.6571 37 1 5.7909 1.8191 -3.3482 38 1 5.6710 4.0958 -2.4582 39 1 6.4562 4.1514 -4.0584 40 1 6.0278 6.8661 -4.6192 41 1 7.4536 4.2250 -0.3456 42 1 9.1570 4.3468 -0.8535 43 1 8.4863 2.0143 -0.1540 44 1 9.0761 2.1067 -1.8314 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092936328.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:38 Heat of formation + Delta-G solvation = 52.944146 kcal Electronic energy + Delta-G solvation = -23241.568651 eV Core-core repulsion = 19968.427183 eV Total energy + Delta-G solvation = -3273.141468 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.57330 -39.72894 -38.63506 -36.37389 -34.04093 -33.44859 -31.67974 -31.49505 -29.62550 -28.27114 -26.34448 -24.40217 -24.28403 -22.87333 -22.68129 -21.63974 -20.86909 -20.80272 -18.78083 -17.89834 -17.35399 -16.80852 -16.45067 -16.02812 -15.72102 -15.47014 -15.37229 -14.99285 -14.84753 -14.75631 -14.49851 -13.92972 -13.74862 -13.54227 -13.30305 -13.11903 -12.99255 -12.78598 -12.75300 -12.63277 -12.37096 -12.26434 -12.08713 -11.90211 -11.66343 -11.54518 -11.46232 -11.00606 -10.71976 -10.61414 -9.40089 -9.09230 -8.71344 -7.89068 -5.34816 0.67435 1.46106 1.47329 1.56723 1.60425 1.92479 2.49664 2.88081 3.04415 3.26402 3.46077 3.65646 3.76447 3.89743 3.92917 4.10612 4.13637 4.25009 4.31774 4.35675 4.40427 4.45841 4.57913 4.63097 4.68126 4.72210 4.86273 4.88479 4.89846 4.94938 4.98416 5.05228 5.12056 5.15917 5.18576 5.22251 5.32977 5.39973 5.58954 5.61117 5.62597 6.07325 6.14859 6.27460 6.35080 7.10495 7.80916 8.36090 9.18051 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.021148 B = 0.003542 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.689792 B = 7902.499779 C = 8343.436738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.147 4.147 3 H 0.080 0.920 4 C -0.158 4.158 5 C -0.084 4.084 6 H 0.157 0.843 7 C 0.004 3.996 8 C -0.213 4.213 9 C -0.212 4.212 10 C -0.011 4.011 11 C 0.134 3.866 12 N -0.545 5.545 13 C 0.052 3.948 14 C 0.189 3.811 15 N -0.614 5.614 16 C -0.265 4.265 17 H 0.072 0.928 18 C -0.053 4.053 19 N -0.938 5.938 20 Si 0.971 3.029 21 H -0.284 1.284 22 H -0.295 1.295 23 H -0.267 1.267 24 C 0.143 3.857 25 C 0.056 3.944 26 O -0.184 6.184 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.129 0.871 31 H 0.084 0.916 32 H 0.166 0.834 33 H 0.153 0.847 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.027 0.973 37 H 0.073 0.927 38 H -0.011 1.011 39 H 0.057 0.943 40 H 0.250 0.750 41 H 0.011 0.989 42 H 0.067 0.933 43 H 0.100 0.900 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.207 -18.757 6.656 21.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.165 4.165 3 H 0.099 0.901 4 C -0.194 4.194 5 C -0.102 4.102 6 H 0.175 0.825 7 C -0.046 4.046 8 C -0.232 4.232 9 C -0.232 4.232 10 C -0.062 4.062 11 C 0.007 3.993 12 N -0.271 5.271 13 C -0.077 4.077 14 C 0.063 3.937 15 N -0.338 5.338 16 C -0.395 4.395 17 H 0.089 0.911 18 C -0.248 4.248 19 N -0.584 5.584 20 Si 0.799 3.201 21 H -0.211 1.211 22 H -0.222 1.222 23 H -0.191 1.191 24 C 0.017 3.983 25 C -0.072 4.072 26 O -0.081 6.081 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.147 0.853 31 H 0.102 0.898 32 H 0.184 0.816 33 H 0.171 0.829 34 H 0.122 0.878 35 H 0.095 0.905 36 H 0.045 0.955 37 H 0.091 0.909 38 H 0.007 0.993 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.029 0.971 42 H 0.085 0.915 43 H 0.118 0.882 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.600 -18.401 7.196 21.169 hybrid contribution 0.937 0.778 -1.539 1.963 sum -6.663 -17.623 5.656 19.671 Atomic orbital electron populations 1.21378 0.90182 1.03227 1.02646 1.22528 0.96890 0.93804 1.03275 0.90142 1.23231 1.02749 1.01466 0.91993 1.20790 0.90952 1.03749 0.94691 0.82517 1.21952 0.87718 1.02613 0.92280 1.21730 0.97517 1.08196 0.95791 1.21803 0.96393 1.06636 0.98331 1.22427 0.92029 1.04337 0.87366 1.20525 0.87477 0.87316 1.03945 1.61835 1.34116 1.07976 1.23133 1.22600 0.99559 0.97295 0.88262 1.20550 0.87290 0.88562 0.97280 1.44422 1.30799 1.41657 1.16936 1.19586 0.92129 1.08106 1.19673 0.91080 1.25849 0.96390 0.99161 1.03410 1.70210 1.08303 1.41894 1.38000 0.85206 0.78221 0.77471 0.79181 1.21122 1.22179 1.19111 1.21142 0.97846 0.92613 0.86653 1.22508 0.88554 0.95784 1.00384 1.83897 1.20264 1.65563 1.38378 0.90474 0.91627 0.91640 0.85306 0.89753 0.81614 0.82883 0.87763 0.90452 0.95507 0.90893 0.99300 0.92445 0.94090 0.97080 0.91499 0.88233 0.94706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 10.19 71.98 0.73 -0.90 16 2 C -0.15 -2.89 6.11 -10.79 -0.07 -2.96 16 3 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 4 C -0.16 -2.78 9.81 30.59 0.30 -2.48 16 5 C -0.08 -1.66 5.96 -11.54 -0.07 -1.73 16 6 H 0.16 2.21 8.14 -2.39 -0.02 2.19 16 7 C 0.00 0.12 6.80 24.83 0.17 0.29 16 8 C -0.21 -5.62 10.81 22.19 0.24 -5.38 16 9 C -0.21 -6.08 9.20 22.19 0.20 -5.87 16 10 C -0.01 -0.35 6.24 24.83 0.15 -0.19 16 11 C 0.13 3.81 5.50 85.55 0.47 4.28 16 12 N -0.55 -19.67 4.62 -899.81 -4.16 -23.83 16 13 C 0.05 2.13 5.43 86.39 0.47 2.60 16 14 C 0.19 9.84 5.42 86.35 0.47 10.31 16 15 N -0.61 -32.40 3.04 -698.14 -2.12 -34.52 16 16 C -0.27 -14.96 9.63 84.03 0.81 -14.15 16 17 H 0.07 3.86 7.88 -2.91 -0.02 3.83 16 18 C -0.05 -3.03 4.94 84.86 0.42 -2.61 16 19 N -0.94 -57.30 11.15 21.65 0.24 -57.05 16 20 Si 0.97 45.56 29.59 68.60 2.03 47.59 16 21 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 C 0.14 6.17 6.69 86.35 0.58 6.75 16 25 C 0.06 1.93 5.62 86.38 0.49 2.41 16 26 O -0.18 -5.81 10.36 -2.49 -0.03 -5.84 16 27 H 0.08 0.78 7.90 -2.39 -0.02 0.76 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.13 1.52 8.05 -2.39 -0.02 1.50 16 31 H 0.08 1.77 7.96 -2.39 -0.02 1.75 16 32 H 0.17 3.45 8.06 -2.91 -0.02 3.43 16 33 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 34 H 0.10 2.55 7.97 -2.38 -0.02 2.53 16 35 H 0.08 1.95 8.12 -2.39 -0.02 1.93 16 36 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 2.87 5.89 -2.39 -0.01 2.85 16 38 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 39 H 0.06 3.31 6.12 -2.39 -0.01 3.29 16 40 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 41 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.07 2.70 7.96 -2.39 -0.02 2.68 16 43 H 0.10 2.73 7.99 -2.39 -0.02 2.71 16 44 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -69.04 353.82 2.29 -66.75 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.96 Total: 16.52 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 5.36 Total: -9.63 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -6.04 Total: -115.40 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.03 Total: -5.84 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -69.04 2.29 -66.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936328.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.694 kcal (2) G-P(sol) polarization free energy of solvation -69.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds