Wall clock time and date at job start Tue Mar 31 2020 06:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 115.54973 * 2 1 4 4 C 1.53079 * 117.52899 * 145.71070 * 2 1 3 5 5 C 1.52997 * 117.49813 * 214.32670 * 2 1 3 6 6 H 1.09002 * 117.49382 * 144.98348 * 5 2 1 7 7 C 1.50695 * 117.50241 * 359.97438 * 5 2 1 8 8 C 1.34507 * 125.79258 * 120.43095 * 7 5 2 9 9 C 1.41386 * 106.84533 * 180.11648 * 8 7 5 10 10 C 1.34514 * 106.83670 * 359.57078 * 9 8 7 11 11 C 1.50698 * 125.78945 * 180.30182 * 10 9 8 12 12 N 1.46896 * 109.47598 * 89.97183 * 11 10 9 13 13 C 1.46895 * 110.99932 * 294.30565 * 12 11 10 14 14 C 1.53246 * 109.33878 * 172.74232 * 13 12 11 15 15 N 1.47080 * 108.51982 * 53.83126 * 14 13 12 16 16 C 1.36935 * 120.88508 * 128.83821 * 15 14 13 17 17 H 1.07999 * 120.00212 * 206.56615 * 16 15 14 18 18 C 1.38821 * 119.99709 * 26.55678 * 16 15 14 19 19 N 1.31611 * 119.99996 * 17.02281 * 18 16 15 20 20 Si 1.86795 * 119.99837 * 197.01871 * 18 16 15 21 21 H 1.48498 * 109.47302 * 90.00294 * 20 18 16 22 22 H 1.48495 * 109.47294 * 210.00371 * 20 18 16 23 23 H 1.48498 * 109.47417 * 330.00276 * 20 18 16 24 24 C 1.47083 * 118.23484 * 308.81225 * 15 14 13 25 25 C 1.46896 * 111.00168 * 169.99746 * 12 11 10 26 26 O 1.34305 * 108.42102 * 0.26111 * 10 9 8 27 27 H 1.08996 * 109.46878 * 205.66521 * 1 2 3 28 28 H 1.08997 * 109.47297 * 325.67178 * 1 2 3 29 29 H 1.08998 * 109.46618 * 85.67553 * 1 2 3 30 30 H 1.08992 * 117.51242 * 359.97438 * 4 2 1 31 31 H 1.09000 * 117.48978 * 214.95616 * 4 2 1 32 32 H 1.08007 * 126.57659 * 359.95024 * 8 7 5 33 33 H 1.07995 * 126.58078 * 179.83352 * 9 8 7 34 34 H 1.09002 * 109.47115 * 209.97748 * 11 10 9 35 35 H 1.08997 * 109.46961 * 329.96923 * 11 10 9 36 36 H 1.09000 * 109.49479 * 292.70163 * 13 12 11 37 37 H 1.08996 * 109.49655 * 52.78363 * 13 12 11 38 38 H 1.09000 * 109.63061 * 294.11675 * 14 13 12 39 39 H 1.09002 * 109.62450 * 173.53577 * 14 13 12 40 40 H 0.97001 * 120.00305 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.62501 * 291.47405 * 24 15 14 42 42 H 1.09000 * 109.62571 * 170.89982 * 24 15 14 43 43 H 1.08996 * 109.49732 * 307.21487 * 25 12 11 44 44 H 1.09002 * 109.48937 * 67.27143 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2376 -1.1215 0.7648 5 6 2.2365 -1.1208 -0.7653 6 1 3.1713 -0.8746 -1.2690 7 6 1.3721 -2.1405 -1.4609 8 6 1.3732 -2.4042 -2.7799 9 6 0.4140 -3.4203 -2.9954 10 6 -0.1091 -3.7234 -1.7937 11 6 -1.1700 -4.7609 -1.5307 12 7 -0.5319 -6.0560 -1.2596 13 6 0.1694 -6.5566 -2.4493 14 6 0.9683 -7.8104 -2.0774 15 7 0.0566 -8.7737 -1.4416 16 6 -0.0089 -10.0710 -1.8750 17 1 -0.9156 -10.6413 -1.7371 18 6 1.0901 -10.6530 -2.4917 19 7 2.2805 -10.1053 -2.3686 20 14 0.8795 -12.2138 -3.4962 21 1 0.5881 -11.8581 -4.9082 22 1 2.1288 -13.0142 -3.4350 23 1 -0.2459 -13.0098 -2.9440 24 6 -0.7824 -8.3066 -0.3275 25 6 -1.5123 -7.0333 -0.7682 26 8 0.4750 -2.9452 -0.8680 27 1 -0.3633 -0.9263 0.4451 28 1 -0.3634 0.8486 0.5795 29 1 -0.3632 0.0775 -1.0248 30 1 1.6131 -1.8593 1.2684 31 1 3.1729 -0.8754 1.2675 32 1 1.9871 -1.9289 -3.5308 33 1 0.1544 -3.8700 -3.9423 34 1 -1.7652 -4.4614 -0.6681 35 1 -1.8157 -4.8498 -2.4043 36 1 -0.5576 -6.8046 -3.2226 37 1 0.8488 -5.7895 -2.8208 38 1 1.7638 -7.5446 -1.3813 39 1 1.3973 -8.2514 -2.9772 40 1 3.0485 -10.5122 -2.7993 41 1 -0.1551 -8.0886 0.5369 42 1 -1.5107 -9.0757 -0.0702 43 1 -2.0526 -6.6119 0.0794 44 1 -2.2162 -7.2743 -1.5648 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092936330.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:53 Heat of formation + Delta-G solvation = 71.920252 kcal Electronic energy + Delta-G solvation = -23407.675283 eV Core-core repulsion = 20135.356681 eV Total energy + Delta-G solvation = -3272.318602 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.47608 -38.20318 -37.74532 -34.57627 -32.83273 -31.65672 -29.98458 -29.90062 -28.69127 -26.97704 -24.80479 -22.85981 -22.56124 -21.84561 -21.62014 -20.65163 -19.62421 -19.06094 -16.85702 -16.45143 -16.20206 -15.64401 -14.97291 -14.80674 -14.37815 -14.25386 -13.60118 -13.36944 -13.28903 -13.19270 -13.10267 -12.98641 -12.73220 -12.51472 -11.98785 -11.89487 -11.66084 -11.53095 -11.35632 -11.06305 -10.74652 -10.71265 -10.43968 -10.29657 -10.21200 -10.04033 -9.78362 -9.63489 -9.54242 -8.49245 -8.10407 -7.81031 -6.64934 -5.75639 -3.17152 1.79906 2.69843 2.98110 3.39119 3.45757 3.47195 3.69438 4.34883 4.46262 4.50973 4.53654 4.69531 4.93435 5.09835 5.19616 5.21308 5.40028 5.41814 5.47120 5.52562 5.56554 5.60082 5.63420 5.76300 5.87004 5.90202 5.93728 6.00667 6.08719 6.13087 6.15807 6.24999 6.30943 6.33848 6.56493 6.68075 6.72382 6.94232 7.25419 7.37898 7.54463 7.67206 7.72034 7.83624 8.45551 9.23313 9.86771 10.45572 11.33088 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.028307 B = 0.003421 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.900657 B = 8182.611901 C = 8455.765252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.142 4.142 3 H 0.110 0.890 4 C -0.166 4.166 5 C -0.078 4.078 6 H 0.131 0.869 7 C 0.016 3.984 8 C -0.203 4.203 9 C -0.207 4.207 10 C 0.014 3.986 11 C 0.129 3.871 12 N -0.529 5.529 13 C 0.031 3.969 14 C 0.180 3.820 15 N -0.596 5.596 16 C -0.252 4.252 17 H 0.066 0.934 18 C 0.001 3.999 19 N -0.903 5.903 20 Si 0.903 3.097 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.149 3.851 25 C 0.045 3.955 26 O -0.164 6.164 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.025 0.975 37 H 0.066 0.934 38 H 0.025 0.975 39 H 0.089 0.911 40 H 0.254 0.746 41 H 0.026 0.974 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.742 19.779 2.325 20.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 H 0.128 0.872 4 C -0.203 4.203 5 C -0.096 4.096 6 H 0.149 0.851 7 C -0.034 4.034 8 C -0.222 4.222 9 C -0.227 4.227 10 C -0.037 4.037 11 C 0.001 3.999 12 N -0.255 5.255 13 C -0.098 4.098 14 C 0.054 3.946 15 N -0.319 5.319 16 C -0.382 4.382 17 H 0.084 0.916 18 C -0.198 4.198 19 N -0.547 5.547 20 Si 0.733 3.267 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.205 1.205 24 C 0.022 3.978 25 C -0.084 4.084 26 O -0.060 6.060 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.043 0.957 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.107 0.893 40 H 0.064 0.936 41 H 0.044 0.956 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.315 19.731 2.951 20.224 hybrid contribution -0.403 -0.932 -1.502 1.813 sum -3.718 18.800 1.449 19.219 Atomic orbital electron populations 1.21366 0.92513 1.02225 1.01998 1.22505 0.95933 0.94077 1.03523 0.87182 1.23206 1.02951 1.01369 0.92775 1.20555 0.98606 0.96272 0.94192 0.85100 1.21144 0.94744 0.96039 0.91513 1.21387 1.03439 1.01997 0.95363 1.21526 1.01026 1.01699 0.98492 1.22244 0.99282 0.95555 0.86641 1.20479 0.90780 0.87301 1.01311 1.61947 1.28469 1.01306 1.33770 1.23012 0.97539 0.99446 0.89789 1.20846 0.90153 0.85167 0.98457 1.44147 1.46048 1.07423 1.34293 1.19210 0.96343 0.88619 1.34031 0.91591 1.25033 0.94750 0.98030 1.01945 1.70034 0.97918 1.41371 1.45386 0.86279 0.76984 0.82948 0.80496 1.21518 1.21755 1.20476 1.20972 0.93638 0.92116 0.91052 1.22649 0.93318 0.94088 0.98304 1.83925 1.43519 1.41046 1.37516 0.91959 0.92166 0.92240 0.87914 0.88106 0.83893 0.83809 0.89780 0.92239 0.95657 0.91518 0.95660 0.89338 0.93624 0.95628 0.92468 0.91846 0.95170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 9.16 37.16 0.34 -0.82 16 2 C -0.14 -1.27 6.41 -90.58 -0.58 -1.85 16 3 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.17 -1.62 9.82 -26.69 -0.26 -1.88 16 5 C -0.08 -0.82 6.23 -91.77 -0.57 -1.40 16 6 H 0.13 1.14 8.14 -51.93 -0.42 0.71 16 7 C 0.02 0.22 5.89 -35.63 -0.21 0.01 16 8 C -0.20 -2.76 10.81 -39.70 -0.43 -3.19 16 9 C -0.21 -3.05 9.22 -39.70 -0.37 -3.41 16 10 C 0.01 0.21 6.23 -35.63 -0.22 -0.01 16 11 C 0.13 1.94 5.50 -4.98 -0.03 1.92 16 12 N -0.53 -9.81 4.62 -235.77 -1.09 -10.90 16 13 C 0.03 0.63 5.43 -3.70 -0.02 0.61 16 14 C 0.18 4.51 5.42 -3.60 -0.02 4.49 16 15 N -0.60 -15.44 3.04 -172.00 -0.52 -15.96 16 16 C -0.25 -7.05 9.63 -15.06 -0.15 -7.20 16 17 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 18 C 0.00 0.03 4.94 -17.43 -0.09 -0.06 16 19 N -0.90 -26.68 11.15 55.49 0.62 -26.06 16 20 Si 0.90 21.92 29.59 -169.99 -5.03 16.89 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.15 3.23 6.69 -3.60 -0.02 3.21 16 25 C 0.05 0.82 5.62 -3.70 -0.02 0.80 16 26 O -0.16 -2.55 9.63 5.70 0.05 -2.50 16 27 H 0.06 0.67 7.27 -51.93 -0.38 0.29 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.10 1.16 7.88 -51.93 -0.41 0.75 16 31 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.14 1.62 8.06 -52.48 -0.42 1.19 16 33 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 34 H 0.08 1.13 7.97 -51.93 -0.41 0.72 16 35 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 1.30 5.91 -51.93 -0.31 0.99 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 2.44 6.12 -51.93 -0.32 2.12 16 40 H 0.25 7.23 8.31 -40.82 -0.34 6.90 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 1.18 7.95 -51.93 -0.41 0.76 16 43 H 0.06 0.97 7.99 -51.93 -0.41 0.55 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 351.12 15.07 5.29 5.29 Total: -1.00 -31.07 351.12 -10.59 -41.66 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.27 Total: 0.36 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -2.64 Total: -8.79 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.99 Total: -52.92 kcal Atomic # 8 Polarization: -2.55 SS G_CDS: 0.05 Total: -2.50 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.07 -10.59 -41.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936330.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.582 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds