Wall clock time and date at job start Tue Mar 31 2020 06:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 115.54973 * 2 1 4 4 C 1.53079 * 117.52899 * 145.71070 * 2 1 3 5 5 C 1.52997 * 117.49813 * 214.32670 * 2 1 3 6 6 H 1.09002 * 117.49382 * 144.98348 * 5 2 1 7 7 C 1.50695 * 117.50241 * 359.97438 * 5 2 1 8 8 C 1.34507 * 125.79258 * 120.43095 * 7 5 2 9 9 C 1.41386 * 106.84533 * 180.11648 * 8 7 5 10 10 C 1.34514 * 106.83670 * 359.57078 * 9 8 7 11 11 C 1.50698 * 125.78945 * 180.30182 * 10 9 8 12 12 N 1.46896 * 109.47598 * 89.97183 * 11 10 9 13 13 C 1.46895 * 110.99932 * 294.30565 * 12 11 10 14 14 C 1.53246 * 109.33878 * 172.74232 * 13 12 11 15 15 N 1.47080 * 108.51982 * 53.83126 * 14 13 12 16 16 C 1.36935 * 120.88508 * 128.83821 * 15 14 13 17 17 H 1.07999 * 120.00212 * 206.56615 * 16 15 14 18 18 C 1.38821 * 119.99709 * 26.55678 * 16 15 14 19 19 N 1.31611 * 119.99996 * 17.02281 * 18 16 15 20 20 Si 1.86795 * 119.99837 * 197.01871 * 18 16 15 21 21 H 1.48498 * 109.47302 * 90.00294 * 20 18 16 22 22 H 1.48495 * 109.47294 * 210.00371 * 20 18 16 23 23 H 1.48498 * 109.47417 * 330.00276 * 20 18 16 24 24 C 1.47083 * 118.23484 * 308.81225 * 15 14 13 25 25 C 1.46896 * 111.00168 * 169.99746 * 12 11 10 26 26 O 1.34305 * 108.42102 * 0.26111 * 10 9 8 27 27 H 1.08996 * 109.46878 * 205.66521 * 1 2 3 28 28 H 1.08997 * 109.47297 * 325.67178 * 1 2 3 29 29 H 1.08998 * 109.46618 * 85.67553 * 1 2 3 30 30 H 1.08992 * 117.51242 * 359.97438 * 4 2 1 31 31 H 1.09000 * 117.48978 * 214.95616 * 4 2 1 32 32 H 1.08007 * 126.57659 * 359.95024 * 8 7 5 33 33 H 1.07995 * 126.58078 * 179.83352 * 9 8 7 34 34 H 1.09002 * 109.47115 * 209.97748 * 11 10 9 35 35 H 1.08997 * 109.46961 * 329.96923 * 11 10 9 36 36 H 1.09000 * 109.49479 * 292.70163 * 13 12 11 37 37 H 1.08996 * 109.49655 * 52.78363 * 13 12 11 38 38 H 1.09000 * 109.63061 * 294.11675 * 14 13 12 39 39 H 1.09002 * 109.62450 * 173.53577 * 14 13 12 40 40 H 0.97001 * 120.00305 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.62501 * 291.47405 * 24 15 14 42 42 H 1.09000 * 109.62571 * 170.89982 * 24 15 14 43 43 H 1.08996 * 109.49732 * 307.21487 * 25 12 11 44 44 H 1.09002 * 109.48937 * 67.27143 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2376 -1.1215 0.7648 5 6 2.2365 -1.1208 -0.7653 6 1 3.1713 -0.8746 -1.2690 7 6 1.3721 -2.1405 -1.4609 8 6 1.3732 -2.4042 -2.7799 9 6 0.4140 -3.4203 -2.9954 10 6 -0.1091 -3.7234 -1.7937 11 6 -1.1700 -4.7609 -1.5307 12 7 -0.5319 -6.0560 -1.2596 13 6 0.1694 -6.5566 -2.4493 14 6 0.9683 -7.8104 -2.0774 15 7 0.0566 -8.7737 -1.4416 16 6 -0.0089 -10.0710 -1.8750 17 1 -0.9156 -10.6413 -1.7371 18 6 1.0901 -10.6530 -2.4917 19 7 2.2805 -10.1053 -2.3686 20 14 0.8795 -12.2138 -3.4962 21 1 0.5881 -11.8581 -4.9082 22 1 2.1288 -13.0142 -3.4350 23 1 -0.2459 -13.0098 -2.9440 24 6 -0.7824 -8.3066 -0.3275 25 6 -1.5123 -7.0333 -0.7682 26 8 0.4750 -2.9452 -0.8680 27 1 -0.3633 -0.9263 0.4451 28 1 -0.3634 0.8486 0.5795 29 1 -0.3632 0.0775 -1.0248 30 1 1.6131 -1.8593 1.2684 31 1 3.1729 -0.8754 1.2675 32 1 1.9871 -1.9289 -3.5308 33 1 0.1544 -3.8700 -3.9423 34 1 -1.7652 -4.4614 -0.6681 35 1 -1.8157 -4.8498 -2.4043 36 1 -0.5576 -6.8046 -3.2226 37 1 0.8488 -5.7895 -2.8208 38 1 1.7638 -7.5446 -1.3813 39 1 1.3973 -8.2514 -2.9772 40 1 3.0485 -10.5122 -2.7993 41 1 -0.1551 -8.0886 0.5369 42 1 -1.5107 -9.0757 -0.0702 43 1 -2.0526 -6.6119 0.0794 44 1 -2.2162 -7.2743 -1.5648 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092936330.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:52 Heat of formation + Delta-G solvation = 54.253177 kcal Electronic energy + Delta-G solvation = -23408.441385 eV Core-core repulsion = 20135.356681 eV Total energy + Delta-G solvation = -3273.084704 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.55985 -39.72575 -38.61845 -36.36063 -34.01453 -33.42805 -31.66854 -31.34097 -29.57450 -28.45904 -26.39540 -24.40672 -24.27718 -22.88659 -22.76954 -21.53627 -20.84887 -20.62308 -18.77395 -17.49542 -17.37641 -16.88659 -16.58223 -15.99928 -15.98223 -15.60593 -15.36205 -14.95127 -14.83928 -14.72795 -14.13454 -14.00807 -13.74030 -13.56130 -13.30981 -13.19595 -12.99242 -12.85703 -12.66667 -12.63032 -12.35536 -12.25402 -12.08196 -11.89471 -11.64691 -11.55721 -11.41180 -10.96462 -10.69663 -10.61052 -9.39578 -9.07075 -8.70799 -7.88725 -5.34325 0.71617 1.46198 1.47436 1.56774 1.62237 1.95322 2.49876 2.91461 3.05243 3.26672 3.49725 3.66303 3.74795 3.85116 3.99755 4.13398 4.15171 4.25998 4.32522 4.37029 4.44745 4.46603 4.58585 4.63722 4.68737 4.76212 4.86832 4.87917 4.88036 4.91977 4.99148 5.04845 5.12122 5.14662 5.16780 5.21336 5.33626 5.42584 5.59426 5.63068 5.63824 6.08372 6.15713 6.30669 6.35574 7.10863 7.81376 8.36515 9.18352 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.028307 B = 0.003421 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.900657 B = 8182.611901 C = 8455.765252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.127 4.127 3 H 0.138 0.862 4 C -0.170 4.170 5 C -0.096 4.096 6 H 0.152 0.848 7 C 0.014 3.986 8 C -0.217 4.217 9 C -0.212 4.212 10 C -0.012 4.012 11 C 0.135 3.865 12 N -0.545 5.545 13 C 0.053 3.947 14 C 0.189 3.811 15 N -0.614 5.614 16 C -0.265 4.265 17 H 0.071 0.929 18 C -0.053 4.053 19 N -0.937 5.937 20 Si 0.971 3.029 21 H -0.285 1.285 22 H -0.295 1.295 23 H -0.267 1.267 24 C 0.143 3.857 25 C 0.056 3.944 26 O -0.179 6.179 27 H 0.042 0.958 28 H 0.079 0.921 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.121 0.879 32 H 0.164 0.836 33 H 0.151 0.849 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.026 0.974 37 H 0.073 0.927 38 H -0.011 1.011 39 H 0.057 0.943 40 H 0.250 0.750 41 H 0.012 0.988 42 H 0.066 0.934 43 H 0.099 0.901 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.806 21.374 2.269 22.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.144 4.144 3 H 0.156 0.844 4 C -0.207 4.207 5 C -0.113 4.113 6 H 0.169 0.831 7 C -0.036 4.036 8 C -0.236 4.236 9 C -0.232 4.232 10 C -0.062 4.062 11 C 0.008 3.992 12 N -0.270 5.270 13 C -0.077 4.077 14 C 0.063 3.937 15 N -0.338 5.338 16 C -0.395 4.395 17 H 0.089 0.911 18 C -0.249 4.249 19 N -0.584 5.584 20 Si 0.799 3.201 21 H -0.211 1.211 22 H -0.222 1.222 23 H -0.191 1.191 24 C 0.017 3.983 25 C -0.072 4.072 26 O -0.076 6.076 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.139 0.861 32 H 0.181 0.819 33 H 0.169 0.831 34 H 0.122 0.878 35 H 0.094 0.906 36 H 0.044 0.956 37 H 0.091 0.909 38 H 0.008 0.992 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.030 0.970 42 H 0.085 0.915 43 H 0.118 0.882 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.418 21.345 2.911 21.990 hybrid contribution -0.060 -1.363 -1.401 1.956 sum -4.478 19.981 1.510 20.533 Atomic orbital electron populations 1.21378 0.93067 1.02062 1.01714 1.22635 0.95536 0.94731 1.01532 0.84400 1.23239 1.03758 1.01478 0.92222 1.20837 0.99299 0.96559 0.94644 0.83093 1.21805 0.94052 0.95782 0.91967 1.21703 1.03764 1.02146 0.96026 1.21772 1.00981 1.01796 0.98641 1.22375 1.00346 0.96468 0.87012 1.20507 0.90782 0.85009 1.02924 1.61828 1.29557 1.02779 1.32846 1.22591 0.97285 0.97248 0.90541 1.20556 0.90095 0.86991 0.96067 1.44431 1.46501 1.07171 1.35728 1.19583 0.96475 0.89579 1.33829 0.91094 1.25851 0.94405 1.01410 1.03195 1.70207 0.98607 1.43044 1.46508 0.85204 0.76880 0.79189 0.78798 1.21132 1.22198 1.19120 1.21151 0.93257 0.94346 0.89504 1.22505 0.92651 0.92385 0.99680 1.83918 1.44126 1.41517 1.38062 0.93873 0.90248 0.92898 0.90017 0.86064 0.81865 0.83096 0.87838 0.90615 0.95593 0.90865 0.99248 0.92462 0.94094 0.97011 0.91529 0.88246 0.94770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 9.16 71.98 0.66 -1.48 16 2 C -0.13 -1.95 6.41 -10.77 -0.07 -2.02 16 3 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.17 -3.06 9.82 30.62 0.30 -2.76 16 5 C -0.10 -1.85 6.23 -11.54 -0.07 -1.92 16 6 H 0.15 2.25 8.14 -2.39 -0.02 2.23 16 7 C 0.01 0.37 5.89 24.83 0.15 0.52 16 8 C -0.22 -5.69 10.81 22.19 0.24 -5.45 16 9 C -0.21 -6.04 9.22 22.19 0.20 -5.84 16 10 C -0.01 -0.35 6.23 24.83 0.15 -0.20 16 11 C 0.13 3.81 5.50 85.56 0.47 4.28 16 12 N -0.54 -19.59 4.62 -899.85 -4.16 -23.75 16 13 C 0.05 2.15 5.43 86.39 0.47 2.62 16 14 C 0.19 9.82 5.42 86.35 0.47 10.29 16 15 N -0.61 -32.38 3.04 -698.09 -2.12 -34.50 16 16 C -0.26 -14.94 9.63 84.04 0.81 -14.13 16 17 H 0.07 3.85 7.88 -2.91 -0.02 3.83 16 18 C -0.05 -3.06 4.94 84.87 0.42 -2.64 16 19 N -0.94 -57.25 11.15 21.65 0.24 -57.01 16 20 Si 0.97 45.59 29.59 68.60 2.03 47.62 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 C 0.14 6.16 6.69 86.35 0.58 6.74 16 25 C 0.06 1.93 5.62 86.38 0.49 2.41 16 26 O -0.18 -5.50 9.63 -2.53 -0.02 -5.53 16 27 H 0.04 0.90 7.27 -2.39 -0.02 0.88 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.82 7.88 -2.39 -0.02 1.80 16 31 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 33 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 34 H 0.10 2.52 7.97 -2.39 -0.02 2.50 16 35 H 0.08 1.92 8.12 -2.39 -0.02 1.90 16 36 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 2.87 5.91 -2.39 -0.01 2.86 16 38 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H 0.06 3.30 6.12 -2.39 -0.01 3.28 16 40 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 41 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.07 2.69 7.95 -2.39 -0.02 2.67 16 43 H 0.10 2.72 7.99 -2.39 -0.02 2.70 16 44 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -68.72 351.12 2.20 -66.53 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.96 Total: 16.21 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 5.26 Total: -9.58 kcal Atomic # 7 Polarization: -109.22 SS G_CDS: -6.04 Total: -115.25 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.02 Total: -5.53 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -68.72 2.20 -66.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936330.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.782 kcal (2) G-P(sol) polarization free energy of solvation -68.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds