Wall clock time and date at job start Tue Mar 31 2020 08:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47405 * 2 1 4 4 C 1.50701 * 109.47299 * 239.99830 * 2 1 3 5 5 H 1.07996 * 120.00565 * 240.00457 * 4 2 1 6 6 C 1.37876 * 119.99750 * 59.99727 * 4 2 1 7 7 N 1.31515 * 120.00075 * 0.02562 * 6 4 2 8 8 Si 1.86810 * 119.99963 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46594 * 90.00499 * 8 6 4 10 10 H 1.48492 * 109.47057 * 210.00337 * 8 6 4 11 11 H 1.48496 * 109.46776 * 330.00727 * 8 6 4 12 12 N 1.46501 * 109.47087 * 120.00230 * 2 1 3 13 13 C 1.46495 * 120.00375 * 59.99693 * 12 2 1 14 14 C 1.34787 * 119.99556 * 240.00003 * 12 2 1 15 15 O 1.21551 * 119.99821 * 355.47284 * 14 12 2 16 16 C 1.47845 * 119.99753 * 175.47017 * 14 12 2 17 17 C 1.39576 * 120.14273 * 221.14870 * 16 14 12 18 18 C 1.37962 * 119.84782 * 179.74201 * 17 16 14 19 19 C 1.38352 * 120.14806 * 0.53954 * 18 17 16 20 20 C 1.50700 * 119.85497 * 179.71441 * 19 18 17 21 21 N 1.46900 * 109.47126 * 270.01959 * 20 19 18 22 22 C 1.46904 * 110.99901 * 169.99989 * 21 20 19 23 23 C 1.46893 * 111.00275 * 293.95297 * 21 20 19 24 24 C 1.38364 * 120.29141 * 359.73682 * 19 18 17 25 25 C 1.37954 * 120.14812 * 359.97438 * 24 19 18 26 26 H 1.09000 * 109.47414 * 60.00387 * 1 2 3 27 27 H 1.09000 * 109.46893 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47176 * 300.00034 * 1 2 3 29 29 H 0.97008 * 120.00098 * 179.97438 * 7 6 4 30 30 H 1.09005 * 109.46747 * 95.17601 * 13 12 2 31 31 H 1.09002 * 109.47258 * 215.17444 * 13 12 2 32 32 H 1.09005 * 109.47230 * 335.17911 * 13 12 2 33 33 H 1.07990 * 120.07436 * 0.02562 * 17 16 14 34 34 H 1.08005 * 119.92256 * 180.27359 * 18 17 16 35 35 H 1.08999 * 109.47299 * 30.02289 * 20 19 18 36 36 H 1.09008 * 109.47033 * 150.02135 * 20 19 18 37 37 H 1.09001 * 109.47155 * 59.99853 * 22 21 20 38 38 H 1.08996 * 109.47288 * 180.02562 * 22 21 20 39 39 H 1.09003 * 109.46768 * 300.00108 * 22 21 20 40 40 H 1.09004 * 109.47140 * 60.00381 * 23 21 20 41 41 H 1.09007 * 109.47359 * 180.02562 * 23 21 20 42 42 H 1.08999 * 109.47591 * 299.99982 * 23 21 20 43 43 H 1.08005 * 119.92688 * 179.97438 * 24 19 18 44 44 H 1.07996 * 120.07875 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 1.3448 -2.1616 -4.4123 10 1 2.4873 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7119 12 7 2.0183 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0834 15 8 3.1548 1.1015 1.8512 16 6 3.2033 -0.7000 3.3388 17 6 3.2057 0.0111 4.5398 18 6 3.5843 -0.6164 5.7086 19 6 3.9718 -1.9445 5.6902 20 6 4.3903 -2.6216 6.9698 21 7 5.8373 -2.4556 7.1611 22 6 6.2443 -2.8917 8.5036 23 6 6.5911 -3.1723 6.1238 24 6 3.9771 -2.6535 4.5021 25 6 3.5951 -2.0397 3.3272 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 0.7094 1.1617 -3.4844 30 1 2.4609 -2.7357 1.0527 31 1 1.5338 -2.2631 2.4968 32 1 0.7352 -2.3244 0.9071 33 1 2.9074 1.0489 4.5548 34 1 3.5824 -0.0685 6.6394 35 1 3.8590 -2.1727 7.8091 36 1 4.1506 -3.6835 6.9142 37 1 5.9927 -3.9440 8.6357 38 1 7.3198 -2.7576 8.6186 39 1 5.7221 -2.2964 9.2527 40 1 6.3211 -2.7811 5.1428 41 1 7.6594 -3.0331 6.2894 42 1 6.3521 -4.2348 6.1696 43 1 4.2810 -3.6899 4.4945 44 1 3.6001 -2.5941 2.4004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103441482.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:21 Heat of formation + Delta-G solvation = 4.998097 kcal Electronic energy + Delta-G solvation = -23093.404168 eV Core-core repulsion = 19818.183603 eV Total energy + Delta-G solvation = -3275.220565 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.02445 -38.57897 -36.91558 -35.35070 -33.03949 -31.75090 -30.94695 -29.30637 -27.81957 -27.09121 -26.20490 -25.20614 -23.31399 -22.56755 -21.56750 -20.61721 -18.80315 -16.84816 -16.30919 -16.16311 -15.74683 -15.69813 -15.46561 -14.76345 -14.60701 -14.43583 -14.00678 -13.75611 -13.38268 -12.83098 -12.67913 -12.62448 -12.53429 -12.30757 -12.24577 -11.94861 -11.79994 -11.56211 -11.46030 -11.20794 -11.07239 -10.88904 -10.74015 -10.67981 -10.26406 -10.16427 -9.17155 -9.04876 -8.86110 -8.73677 -8.49619 -8.41400 -7.59232 -6.06546 -4.14491 1.11315 1.48641 3.26112 3.27449 3.34194 3.37404 3.74803 3.93184 4.12471 4.40873 4.59760 4.75318 4.90388 5.00822 5.05462 5.08033 5.17362 5.22320 5.24880 5.35523 5.40531 5.51046 5.54439 5.67083 5.75257 5.77257 5.93287 6.00974 6.12292 6.30077 6.36432 6.54655 6.57550 6.70500 6.74710 6.76939 6.82902 6.99515 7.05486 7.43869 7.52357 7.71754 8.01666 8.19804 8.51399 8.83360 9.03565 9.51900 10.98818 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.029278 B = 0.003330 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.129100 B = 8406.333443 C = 8830.154035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.585 5.585 13 C 0.084 3.916 14 C 0.542 3.458 15 O -0.546 6.546 16 C -0.111 4.111 17 C -0.072 4.072 18 C -0.106 4.106 19 C -0.072 4.072 20 C 0.094 3.906 21 N -0.542 5.542 22 C 0.024 3.976 23 C 0.019 3.981 24 C -0.123 4.123 25 C -0.093 4.093 26 H 0.095 0.905 27 H 0.030 0.970 28 H 0.012 0.988 29 H 0.263 0.737 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.083 0.917 36 H 0.043 0.957 37 H 0.024 0.976 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.025 0.975 43 H 0.120 0.880 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.221 -10.146 19.251 22.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.315 5.315 13 C -0.060 4.060 14 C 0.329 3.671 15 O -0.425 6.425 16 C -0.114 4.114 17 C -0.091 4.091 18 C -0.125 4.125 19 C -0.073 4.073 20 C -0.033 4.033 21 N -0.266 5.266 22 C -0.124 4.124 23 C -0.129 4.129 24 C -0.141 4.141 25 C -0.112 4.112 26 H 0.113 0.887 27 H 0.049 0.951 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.101 0.899 36 H 0.061 0.939 37 H 0.043 0.957 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.043 0.957 43 H 0.138 0.862 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.416 -8.935 18.910 21.604 hybrid contribution 0.142 -1.469 -0.867 1.711 sum 5.558 -10.404 18.043 21.556 Atomic orbital electron populations 1.22106 0.98121 0.99432 1.00919 1.18983 0.90868 0.94576 0.79855 0.91812 1.21309 1.31807 1.12958 0.90251 0.92281 1.24895 0.94967 0.94970 0.98964 1.69879 1.36439 1.22555 1.23762 0.86486 0.79190 0.79282 0.82387 1.20629 1.21088 1.19924 1.48178 1.48450 1.11630 1.23288 1.21818 1.01208 0.83110 0.99882 1.18321 0.79449 0.86023 0.83276 1.90740 1.55609 1.18581 1.77586 1.20236 1.02104 0.94453 0.94631 1.21196 0.97021 0.99797 0.91076 1.20881 0.99579 0.93979 0.98034 1.19755 0.98746 0.94423 0.94355 1.21078 0.88318 0.98266 0.95670 1.61975 1.04282 1.57358 1.02982 1.22395 1.01594 0.98202 0.90185 1.22497 0.98470 0.95557 0.96403 1.20924 1.01340 0.99781 0.92075 1.21606 0.97025 0.93720 0.98829 0.88700 0.95051 0.96927 0.92674 0.93307 0.92475 0.90680 0.85277 0.85739 0.89867 0.93872 0.95715 0.91264 0.91303 0.90487 0.91455 0.95675 0.86186 0.84705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 8.96 37.16 0.33 -3.22 16 2 C 0.26 6.67 2.63 -69.08 -0.18 6.49 16 3 H 0.06 1.92 6.91 -51.93 -0.36 1.56 16 4 C -0.52 -14.32 8.37 -34.44 -0.29 -14.61 16 5 H 0.06 1.58 7.65 -52.49 -0.40 1.18 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.29 11.32 55.43 0.63 -24.66 16 8 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.59 -12.85 2.75 -176.37 -0.49 -13.34 16 13 C 0.08 1.44 8.13 59.84 0.49 1.92 16 14 C 0.54 11.91 7.33 -12.32 -0.09 11.82 16 15 O -0.55 -14.18 16.28 5.32 0.09 -14.10 16 16 C -0.11 -1.90 5.16 -104.97 -0.54 -2.44 16 17 C -0.07 -1.09 9.65 -39.18 -0.38 -1.47 16 18 C -0.11 -1.31 9.68 -39.64 -0.38 -1.70 16 19 C -0.07 -0.82 4.89 -104.53 -0.51 -1.33 16 20 C 0.09 0.85 5.11 -4.98 -0.03 0.83 16 21 N -0.54 -5.10 5.01 -252.72 -1.27 -6.37 16 22 C 0.02 0.17 9.57 60.07 0.57 0.75 16 23 C 0.02 0.17 9.13 60.06 0.55 0.72 16 24 C -0.12 -1.43 7.94 -39.64 -0.31 -1.75 16 25 C -0.09 -1.33 7.62 -39.18 -0.30 -1.63 16 26 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 27 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 28 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.05 0.78 6.86 -51.93 -0.36 0.43 16 31 H 0.06 0.83 5.99 -51.93 -0.31 0.52 16 32 H 0.07 1.30 6.44 -51.93 -0.33 0.97 16 33 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 34 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 35 H 0.08 0.66 8.00 -51.93 -0.42 0.25 16 36 H 0.04 0.36 8.06 -51.92 -0.42 -0.06 16 37 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 39 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 40 H 0.08 0.79 6.16 -51.93 -0.32 0.47 16 41 H 0.07 0.55 8.12 -51.93 -0.42 0.12 16 42 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.12 1.14 8.03 -52.48 -0.42 0.71 16 44 H 0.14 1.86 5.52 -52.49 -0.29 1.57 16 LS Contribution 351.25 15.07 5.29 5.29 Total: -1.00 -31.80 351.25 -8.73 -40.54 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.80 Total: 0.44 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -1.16 Total: -3.95 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: -1.12 Total: -44.36 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.09 Total: -14.10 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.80 -8.73 -40.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441482.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.533 kcal (2) G-P(sol) polarization free energy of solvation -31.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds