Wall clock time and date at job start Tue Mar 31 2020 08:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47405 * 2 1 4 4 C 1.50701 * 109.47299 * 239.99830 * 2 1 3 5 5 H 1.07996 * 120.00565 * 240.00457 * 4 2 1 6 6 C 1.37876 * 119.99750 * 59.99727 * 4 2 1 7 7 N 1.31515 * 120.00075 * 0.02562 * 6 4 2 8 8 Si 1.86810 * 119.99963 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46594 * 90.00499 * 8 6 4 10 10 H 1.48492 * 109.47057 * 210.00337 * 8 6 4 11 11 H 1.48496 * 109.46776 * 330.00727 * 8 6 4 12 12 N 1.46501 * 109.47087 * 120.00230 * 2 1 3 13 13 C 1.46495 * 120.00375 * 59.99693 * 12 2 1 14 14 C 1.34787 * 119.99556 * 240.00003 * 12 2 1 15 15 O 1.21551 * 119.99821 * 355.47284 * 14 12 2 16 16 C 1.47845 * 119.99753 * 175.47017 * 14 12 2 17 17 C 1.39576 * 120.14273 * 221.14870 * 16 14 12 18 18 C 1.37962 * 119.84782 * 179.74201 * 17 16 14 19 19 C 1.38352 * 120.14806 * 0.53954 * 18 17 16 20 20 C 1.50700 * 119.85497 * 179.71441 * 19 18 17 21 21 N 1.46900 * 109.47126 * 270.01959 * 20 19 18 22 22 C 1.46904 * 110.99901 * 169.99989 * 21 20 19 23 23 C 1.46893 * 111.00275 * 293.95297 * 21 20 19 24 24 C 1.38364 * 120.29141 * 359.73682 * 19 18 17 25 25 C 1.37954 * 120.14812 * 359.97438 * 24 19 18 26 26 H 1.09000 * 109.47414 * 60.00387 * 1 2 3 27 27 H 1.09000 * 109.46893 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47176 * 300.00034 * 1 2 3 29 29 H 0.97008 * 120.00098 * 179.97438 * 7 6 4 30 30 H 1.09005 * 109.46747 * 95.17601 * 13 12 2 31 31 H 1.09002 * 109.47258 * 215.17444 * 13 12 2 32 32 H 1.09005 * 109.47230 * 335.17911 * 13 12 2 33 33 H 1.07990 * 120.07436 * 0.02562 * 17 16 14 34 34 H 1.08005 * 119.92256 * 180.27359 * 18 17 16 35 35 H 1.08999 * 109.47299 * 30.02289 * 20 19 18 36 36 H 1.09008 * 109.47033 * 150.02135 * 20 19 18 37 37 H 1.09001 * 109.47155 * 59.99853 * 22 21 20 38 38 H 1.08996 * 109.47288 * 180.02562 * 22 21 20 39 39 H 1.09003 * 109.46768 * 300.00108 * 22 21 20 40 40 H 1.09004 * 109.47140 * 60.00381 * 23 21 20 41 41 H 1.09007 * 109.47359 * 180.02562 * 23 21 20 42 42 H 1.08999 * 109.47591 * 299.99982 * 23 21 20 43 43 H 1.08005 * 119.92688 * 179.97438 * 24 19 18 44 44 H 1.07996 * 120.07875 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 1.3448 -2.1616 -4.4123 10 1 2.4873 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7119 12 7 2.0183 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0834 15 8 3.1548 1.1015 1.8512 16 6 3.2033 -0.7000 3.3388 17 6 3.2057 0.0111 4.5398 18 6 3.5843 -0.6164 5.7086 19 6 3.9718 -1.9445 5.6902 20 6 4.3903 -2.6216 6.9698 21 7 5.8373 -2.4556 7.1611 22 6 6.2443 -2.8917 8.5036 23 6 6.5911 -3.1723 6.1238 24 6 3.9771 -2.6535 4.5021 25 6 3.5951 -2.0397 3.3272 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 0.7094 1.1617 -3.4844 30 1 2.4609 -2.7357 1.0527 31 1 1.5338 -2.2631 2.4968 32 1 0.7352 -2.3244 0.9071 33 1 2.9074 1.0489 4.5548 34 1 3.5824 -0.0685 6.6394 35 1 3.8590 -2.1727 7.8091 36 1 4.1506 -3.6835 6.9142 37 1 5.9927 -3.9440 8.6357 38 1 7.3198 -2.7576 8.6186 39 1 5.7221 -2.2964 9.2527 40 1 6.3211 -2.7811 5.1428 41 1 7.6594 -3.0331 6.2894 42 1 6.3521 -4.2348 6.1696 43 1 4.2810 -3.6899 4.4945 44 1 3.6001 -2.5941 2.4004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103441482.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:20 Heat of formation + Delta-G solvation = -15.340748 kcal Electronic energy + Delta-G solvation = -23094.286127 eV Core-core repulsion = 19818.183603 eV Total energy + Delta-G solvation = -3276.102523 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.37054 -39.83984 -37.79566 -37.20533 -34.92025 -33.00242 -32.04691 -31.05088 -28.43302 -28.11716 -27.65824 -27.29421 -24.48756 -23.63531 -22.78210 -21.79908 -20.42952 -18.60769 -18.05961 -17.53210 -16.93376 -16.62538 -16.42293 -16.34817 -15.93650 -15.48514 -15.22321 -15.07369 -14.57702 -14.45109 -14.14468 -13.95498 -13.56647 -13.48858 -13.18382 -13.06240 -12.95029 -12.90159 -12.72263 -12.66344 -12.60284 -12.40709 -12.23317 -12.17356 -12.13859 -11.84417 -11.19996 -10.77473 -10.52849 -9.89822 -9.76840 -9.38729 -9.22017 -8.15995 -6.33063 -0.02626 0.44681 1.40439 1.42572 1.52506 1.81846 2.26244 2.45939 2.73114 3.11786 3.28186 3.60755 3.84911 3.87087 4.02895 4.27566 4.35424 4.37973 4.45796 4.50068 4.61204 4.63189 4.66826 4.70496 4.78520 4.81816 4.85397 4.92275 4.97508 5.01982 5.08341 5.09426 5.10606 5.31339 5.41673 5.46419 5.58062 5.61947 5.64141 5.94334 6.00643 6.07962 6.13277 6.13860 6.73432 6.74815 7.25230 7.42213 8.88652 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.029278 B = 0.003330 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.129100 B = 8406.333443 C = 8830.154035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.260 3.740 3 H 0.007 0.993 4 C -0.539 4.539 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.968 3.032 9 H -0.265 1.265 10 H -0.286 1.286 11 H -0.271 1.271 12 N -0.591 5.591 13 C 0.082 3.918 14 C 0.534 3.466 15 O -0.604 6.604 16 C -0.137 4.137 17 C -0.085 4.085 18 C -0.101 4.101 19 C -0.059 4.059 20 C 0.095 3.905 21 N -0.561 5.561 22 C 0.025 3.975 23 C 0.018 3.982 24 C -0.111 4.111 25 C -0.093 4.093 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.019 0.981 29 H 0.265 0.735 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.148 0.852 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.034 0.966 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.038 0.962 43 H 0.152 0.848 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.936 -13.449 21.181 25.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.158 3.842 3 H 0.025 0.975 4 C -0.578 4.578 5 H 0.079 0.921 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.792 3.208 9 H -0.190 1.190 10 H -0.211 1.211 11 H -0.196 1.196 12 N -0.320 5.320 13 C -0.060 4.060 14 C 0.324 3.676 15 O -0.488 6.488 16 C -0.140 4.140 17 C -0.104 4.104 18 C -0.119 4.119 19 C -0.059 4.059 20 C -0.032 4.032 21 N -0.285 5.285 22 C -0.122 4.122 23 C -0.130 4.130 24 C -0.129 4.129 25 C -0.111 4.111 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.133 0.867 34 H 0.166 0.834 35 H 0.116 0.884 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.056 0.944 43 H 0.169 0.831 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.119 -12.287 20.868 24.978 hybrid contribution -0.025 -0.442 -1.339 1.410 sum 6.095 -12.729 19.529 24.094 Atomic orbital electron populations 1.21891 0.96839 1.00327 1.00061 1.18604 0.91793 0.92187 0.81580 0.97461 1.21556 1.32052 1.13103 0.91058 0.92076 1.25768 0.95035 0.95630 1.02091 1.70026 1.37327 1.23836 1.24505 0.85415 0.78870 0.78254 0.78236 1.19022 1.21131 1.19558 1.48174 1.48289 1.13416 1.22157 1.22057 1.01564 0.80354 1.01980 1.19154 0.78435 0.85490 0.84557 1.90687 1.57809 1.21284 1.78995 1.19888 1.05619 0.95930 0.92606 1.21206 0.98017 0.99448 0.91707 1.21105 0.98531 0.94654 0.97651 1.20128 0.96438 0.93850 0.95529 1.21123 0.88475 0.99004 0.94574 1.61951 1.04324 1.58157 1.04085 1.22427 1.01931 0.98867 0.89024 1.22483 0.98771 0.96184 0.95540 1.21215 0.99673 1.01049 0.90985 1.21634 0.97018 0.92329 1.00157 0.91108 0.93099 0.96165 0.92568 0.91806 0.89487 0.90780 0.86650 0.83415 0.88409 0.92261 0.94782 0.90960 0.90549 0.92066 0.91095 0.94374 0.83082 0.84365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.59 8.96 71.98 0.64 -5.94 16 2 C 0.26 14.11 2.63 44.24 0.12 14.23 16 3 H 0.01 0.48 6.91 -2.39 -0.02 0.46 16 4 C -0.54 -30.09 8.37 25.60 0.21 -29.87 16 5 H 0.06 3.30 7.65 -2.91 -0.02 3.28 16 6 C 0.01 0.80 5.30 84.65 0.45 1.25 16 7 N -0.92 -53.86 11.32 21.45 0.24 -53.62 16 8 Si 0.97 43.61 29.54 68.60 2.03 45.64 16 9 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 10 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 N -0.59 -26.73 2.75 -830.19 -2.29 -29.01 16 13 C 0.08 2.75 8.13 127.77 1.04 3.79 16 14 C 0.53 24.59 7.33 86.78 0.64 25.23 16 15 O -0.60 -33.83 16.28 -3.88 -0.06 -33.90 16 16 C -0.14 -4.74 5.16 -20.09 -0.10 -4.84 16 17 C -0.08 -2.59 9.65 22.53 0.22 -2.37 16 18 C -0.10 -2.29 9.68 22.23 0.22 -2.07 16 19 C -0.06 -1.13 4.89 -19.81 -0.10 -1.23 16 20 C 0.10 1.32 5.11 85.56 0.44 1.76 16 21 N -0.56 -8.54 5.01 -953.46 -4.78 -13.32 16 22 C 0.03 0.26 9.57 127.69 1.22 1.49 16 23 C 0.02 0.27 9.13 127.69 1.17 1.43 16 24 C -0.11 -2.22 7.94 22.23 0.18 -2.04 16 25 C -0.09 -2.49 7.62 22.53 0.17 -2.32 16 26 H 0.07 3.87 6.07 -2.39 -0.01 3.85 16 27 H 0.05 2.27 6.66 -2.39 -0.02 2.25 16 28 H 0.02 0.91 8.14 -2.39 -0.02 0.90 16 29 H 0.27 14.68 8.31 -92.70 -0.77 13.91 16 30 H 0.06 1.94 6.86 -2.38 -0.02 1.92 16 31 H 0.09 2.38 5.99 -2.39 -0.01 2.37 16 32 H 0.07 2.48 6.44 -2.38 -0.02 2.46 16 33 H 0.12 3.73 8.06 -2.92 -0.02 3.70 16 34 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 35 H 0.10 1.11 8.00 -2.39 -0.02 1.09 16 36 H 0.06 0.67 8.06 -2.38 -0.02 0.65 16 37 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.07 0.72 8.12 -2.39 -0.02 0.70 16 39 H 0.08 0.69 8.12 -2.39 -0.02 0.67 16 40 H 0.06 1.08 6.16 -2.39 -0.01 1.07 16 41 H 0.07 0.97 8.12 -2.38 -0.02 0.95 16 42 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.15 2.13 8.03 -2.91 -0.02 2.10 16 44 H 0.14 3.55 5.52 -2.91 -0.02 3.53 16 Total: -1.00 -73.08 351.25 2.63 -70.45 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.98 Total: 15.27 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 6.51 Total: -1.51 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -6.82 Total: -95.94 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.06 Total: -33.90 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -73.08 2.63 -70.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441482.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.112 kcal (2) G-P(sol) polarization free energy of solvation -73.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds