Wall clock time and date at job start Tue Mar 31 2020 07:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47303 * 2 1 4 4 N 1.46906 * 109.47125 * 240.00195 * 2 1 3 5 5 C 1.46902 * 110.99573 * 84.99799 * 4 2 1 6 6 H 1.08997 * 109.47515 * 325.00070 * 5 4 2 7 7 C 1.52999 * 109.47197 * 85.00442 * 5 4 2 8 8 C 1.50699 * 109.46726 * 204.99752 * 5 4 2 9 9 C 1.38240 * 120.00374 * 319.72592 * 8 5 4 10 10 C 1.38233 * 120.00145 * 179.78575 * 9 8 5 11 11 C 1.38238 * 119.99823 * 0.44654 * 10 9 8 12 12 C 1.38233 * 120.00115 * 359.80781 * 11 10 9 13 13 C 1.38240 * 119.99647 * 140.00360 * 8 5 4 14 14 C 1.50703 * 109.47440 * 120.00206 * 2 1 3 15 15 O 1.21280 * 120.00035 * 119.99856 * 14 2 1 16 16 N 1.34775 * 119.99884 * 300.00116 * 14 2 1 17 17 C 1.46499 * 119.99815 * 359.97438 * 16 14 2 18 18 C 1.46503 * 119.99997 * 179.97438 * 16 14 2 19 19 C 1.50703 * 109.46976 * 89.99976 * 18 16 14 20 20 H 1.07998 * 119.99932 * 0.02562 * 19 18 16 21 21 C 1.37871 * 119.99883 * 179.97438 * 19 18 16 22 22 N 1.31517 * 120.00301 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00013 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47505 * 89.99710 * 23 21 19 25 25 H 1.48504 * 109.47378 * 209.99689 * 23 21 19 26 26 H 1.48503 * 109.47152 * 329.99670 * 23 21 19 27 27 H 1.09005 * 109.46664 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46897 * 299.99209 * 1 2 3 29 29 H 1.08994 * 109.47330 * 60.00158 * 1 2 3 30 30 H 1.00896 * 111.00309 * 321.04211 * 4 2 1 31 31 H 1.09011 * 109.46887 * 299.99666 * 7 5 4 32 32 H 1.08999 * 109.47708 * 59.99506 * 7 5 4 33 33 H 1.09000 * 109.47499 * 180.02562 * 7 5 4 34 34 H 1.07996 * 119.99710 * 0.02562 * 9 8 5 35 35 H 1.07993 * 120.00254 * 180.28047 * 10 9 8 36 36 H 1.07999 * 119.99850 * 179.83668 * 11 10 9 37 37 H 1.08001 * 120.00168 * 179.97438 * 12 11 10 38 38 H 1.07990 * 120.00071 * 359.97438 * 13 8 5 39 39 H 1.09001 * 109.47199 * 90.00473 * 17 16 14 40 40 H 1.09004 * 109.46966 * 209.99889 * 17 16 14 41 41 H 1.08996 * 109.47826 * 330.00006 * 17 16 14 42 42 H 1.08999 * 109.47129 * 209.99924 * 18 16 14 43 43 H 1.08999 * 109.47017 * 330.00085 * 18 16 14 44 44 H 0.96993 * 120.00349 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 1 1.2575 0.9330 -2.2906 7 6 3.4110 0.9810 -2.3224 8 6 1.9786 -0.5675 -3.6259 9 6 2.6375 -1.7767 -3.7468 10 6 2.5387 -2.5036 -4.9184 11 6 1.7884 -2.0169 -5.9725 12 6 1.1337 -0.8053 -5.8535 13 6 1.2290 -0.0803 -4.6803 14 6 2.0324 -0.7105 1.2304 15 8 2.7297 -1.6965 1.1191 16 7 1.7068 -0.2500 2.4545 17 6 0.8650 0.9414 2.5890 18 6 2.1948 -0.9410 3.6507 19 6 3.5225 -0.3580 4.0611 20 1 3.9589 0.4470 3.4884 21 6 4.1794 -0.8516 5.1682 22 7 5.3384 -0.3432 5.5261 23 14 3.4242 -2.2434 6.1590 24 1 3.8842 -3.5457 5.6136 25 1 3.8441 -2.1252 7.5785 26 1 1.9437 -2.1658 6.0727 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.4496 -1.4979 -1.4101 31 1 3.4861 1.5526 -1.3972 32 1 4.2359 0.2708 -2.3787 33 1 3.4574 1.6604 -3.1735 34 1 3.2264 -2.1553 -2.9245 35 1 3.0498 -3.4504 -5.0112 36 1 1.7133 -2.5836 -6.8888 37 1 0.5478 -0.4248 -6.6772 38 1 0.7175 0.8662 -4.5874 39 1 -0.1831 0.6438 2.6222 40 1 1.1229 1.4666 3.5087 41 1 1.0288 1.6002 1.7363 42 1 1.4767 -0.8155 4.4611 43 1 2.3155 -2.0023 3.4334 44 1 5.8004 -0.6902 6.3051 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112545252.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:02 Heat of formation + Delta-G solvation = 1.902090 kcal Electronic energy + Delta-G solvation = -23174.916933 eV Core-core repulsion = 19899.562115 eV Total energy + Delta-G solvation = -3275.354818 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.87841 -39.09988 -36.55173 -34.84943 -33.12826 -32.27968 -31.02403 -29.69043 -28.69301 -27.65525 -26.15172 -24.31238 -23.24604 -22.66917 -21.51707 -20.32973 -18.59179 -17.26324 -16.89701 -16.38295 -15.89066 -15.52004 -15.13237 -14.69151 -14.43686 -14.23179 -13.88359 -13.65475 -13.45762 -13.31706 -13.16191 -12.79882 -12.38539 -12.27328 -12.14331 -12.09583 -11.89502 -11.82972 -11.54922 -11.32365 -11.24459 -11.04465 -10.81127 -10.77152 -10.48553 -10.10679 -9.49865 -9.03676 -8.97378 -8.81915 -8.55292 -8.23857 -7.62113 -6.05006 -4.03336 1.20222 1.29287 3.31619 3.37493 3.39508 3.45757 3.60652 3.74656 4.31765 4.42878 4.55315 4.78050 4.87218 4.94974 5.03473 5.09137 5.17967 5.22724 5.28675 5.36300 5.40525 5.47377 5.51140 5.68404 5.70504 5.76658 5.82181 5.87634 5.96183 5.97364 6.00370 6.22379 6.30875 6.33471 6.41843 6.46958 6.71837 6.88164 6.95638 7.08602 7.41447 7.43952 7.65532 8.33650 8.51752 8.98322 9.11523 9.55652 11.08556 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.026060 B = 0.003390 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.202717 B = 8256.554477 C = 8557.312141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.069 3.931 3 H 0.099 0.901 4 N -0.657 5.657 5 C 0.126 3.874 6 H 0.051 0.949 7 C -0.137 4.137 8 C -0.087 4.087 9 C -0.097 4.097 10 C -0.122 4.122 11 C -0.124 4.124 12 C -0.125 4.125 13 C -0.115 4.115 14 C 0.513 3.487 15 O -0.519 6.519 16 N -0.601 5.601 17 C 0.083 3.917 18 C 0.217 3.783 19 C -0.527 4.527 20 H 0.074 0.926 21 C 0.071 3.929 22 N -0.899 5.899 23 Si 0.877 3.123 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.266 1.266 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.347 0.653 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.136 0.864 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.028 0.972 43 H 0.036 0.964 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.376 2.417 -19.950 23.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.045 4.045 3 H 0.117 0.883 4 N -0.288 5.288 5 C 0.016 3.984 6 H 0.069 0.931 7 C -0.195 4.195 8 C -0.087 4.087 9 C -0.116 4.116 10 C -0.140 4.140 11 C -0.142 4.142 12 C -0.143 4.143 13 C -0.134 4.134 14 C 0.298 3.702 15 O -0.394 6.394 16 N -0.335 5.335 17 C -0.061 4.061 18 C 0.096 3.904 19 C -0.565 4.565 20 H 0.092 0.908 21 C -0.131 4.131 22 N -0.537 5.537 23 Si 0.704 3.296 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.191 1.191 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.167 0.833 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.154 0.846 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.046 0.954 43 H 0.054 0.946 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.178 1.939 -19.685 22.720 hybrid contribution -1.188 -0.454 0.401 1.333 sum -12.366 1.485 -19.284 22.956 Atomic orbital electron populations 1.22698 0.95732 1.03085 1.03401 1.21500 0.93543 0.98788 0.90633 0.88275 1.60223 1.58153 1.08700 1.01772 1.20452 0.98157 0.92922 0.86827 0.93115 1.21816 0.96658 0.99723 1.01289 1.19968 0.97666 0.95653 0.95446 1.21230 0.98324 0.94087 0.97910 1.21222 0.99192 0.99996 0.93578 1.21155 0.97897 0.96368 0.98807 1.21073 1.00194 0.95392 0.97628 1.21020 0.99206 0.99819 0.93348 1.20152 0.80990 0.85266 0.83788 1.90658 1.36489 1.26347 1.85909 1.47807 1.50469 1.28474 1.06730 1.21779 0.93477 0.88100 1.02768 1.19627 0.95216 0.93688 0.81823 1.21345 1.03116 1.20209 1.11841 0.90798 1.24863 0.94647 0.96470 0.97101 1.69899 1.14821 1.42439 1.26569 0.86844 0.79992 0.83345 0.79446 1.19914 1.21137 1.19113 0.92057 0.90069 0.92257 0.83277 0.92203 0.91489 0.92674 0.84646 0.86060 0.86388 0.86319 0.86327 0.93546 0.90725 0.92217 0.95386 0.94639 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.16 8.78 37.16 0.33 -1.83 16 2 C 0.07 1.01 2.00 -68.86 -0.14 0.87 16 3 H 0.10 1.38 6.37 -51.93 -0.33 1.04 16 4 N -0.66 -9.32 4.94 -102.17 -0.50 -9.82 16 5 C 0.13 1.46 2.63 -68.86 -0.18 1.27 16 6 H 0.05 0.52 6.97 -51.93 -0.36 0.16 16 7 C -0.14 -1.65 9.37 37.16 0.35 -1.30 16 8 C -0.09 -0.96 4.71 -104.62 -0.49 -1.46 16 9 C -0.10 -1.13 9.01 -39.58 -0.36 -1.49 16 10 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 11 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 12 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 13 C -0.12 -1.12 9.67 -39.58 -0.38 -1.50 16 14 C 0.51 10.52 7.14 -10.98 -0.08 10.44 16 15 O -0.52 -13.06 16.01 5.56 0.09 -12.97 16 16 N -0.60 -12.39 2.86 -182.95 -0.52 -12.91 16 17 C 0.08 1.25 8.80 59.85 0.53 1.78 16 18 C 0.22 5.38 4.23 -5.19 -0.02 5.36 16 19 C -0.53 -15.35 9.94 -34.44 -0.34 -15.69 16 20 H 0.07 2.37 8.06 -52.49 -0.42 1.94 16 21 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 22 N -0.90 -28.07 13.96 55.43 0.77 -27.29 16 23 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 24 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 27 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 28 H 0.08 0.86 4.53 -51.93 -0.24 0.62 16 29 H 0.06 0.56 7.43 -51.93 -0.39 0.17 16 30 H 0.35 4.83 7.74 -39.29 -0.30 4.52 16 31 H 0.06 0.76 7.43 -51.92 -0.39 0.37 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.14 1.74 7.73 -52.49 -0.41 1.33 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.12 0.94 8.04 -52.49 -0.42 0.52 16 39 H 0.05 0.58 6.95 -51.93 -0.36 0.22 16 40 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 41 H 0.06 0.75 6.01 -51.93 -0.31 0.44 16 42 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 43 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 44 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 354.08 15.07 5.34 5.34 Total: -1.00 -34.60 354.08 -8.36 -42.96 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.77 Total: 3.76 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -2.08 Total: -6.23 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.25 Total: -50.03 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.09 Total: -12.97 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.60 -8.36 -42.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112545252.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.858 kcal (2) G-P(sol) polarization free energy of solvation -34.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds