Wall clock time and date at job start Tue Mar 31 2020 07:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47303 * 2 1 4 4 N 1.46906 * 109.47125 * 240.00195 * 2 1 3 5 5 C 1.46902 * 110.99573 * 84.99799 * 4 2 1 6 6 H 1.08997 * 109.47515 * 325.00070 * 5 4 2 7 7 C 1.52999 * 109.47197 * 85.00442 * 5 4 2 8 8 C 1.50699 * 109.46726 * 204.99752 * 5 4 2 9 9 C 1.38240 * 120.00374 * 319.72592 * 8 5 4 10 10 C 1.38233 * 120.00145 * 179.78575 * 9 8 5 11 11 C 1.38238 * 119.99823 * 0.44654 * 10 9 8 12 12 C 1.38233 * 120.00115 * 359.80781 * 11 10 9 13 13 C 1.38240 * 119.99647 * 140.00360 * 8 5 4 14 14 C 1.50703 * 109.47440 * 120.00206 * 2 1 3 15 15 O 1.21280 * 120.00035 * 119.99856 * 14 2 1 16 16 N 1.34775 * 119.99884 * 300.00116 * 14 2 1 17 17 C 1.46499 * 119.99815 * 359.97438 * 16 14 2 18 18 C 1.46503 * 119.99997 * 179.97438 * 16 14 2 19 19 C 1.50703 * 109.46976 * 89.99976 * 18 16 14 20 20 H 1.07998 * 119.99932 * 0.02562 * 19 18 16 21 21 C 1.37871 * 119.99883 * 179.97438 * 19 18 16 22 22 N 1.31517 * 120.00301 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00013 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47505 * 89.99710 * 23 21 19 25 25 H 1.48504 * 109.47378 * 209.99689 * 23 21 19 26 26 H 1.48503 * 109.47152 * 329.99670 * 23 21 19 27 27 H 1.09005 * 109.46664 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46897 * 299.99209 * 1 2 3 29 29 H 1.08994 * 109.47330 * 60.00158 * 1 2 3 30 30 H 1.00896 * 111.00309 * 321.04211 * 4 2 1 31 31 H 1.09011 * 109.46887 * 299.99666 * 7 5 4 32 32 H 1.08999 * 109.47708 * 59.99506 * 7 5 4 33 33 H 1.09000 * 109.47499 * 180.02562 * 7 5 4 34 34 H 1.07996 * 119.99710 * 0.02562 * 9 8 5 35 35 H 1.07993 * 120.00254 * 180.28047 * 10 9 8 36 36 H 1.07999 * 119.99850 * 179.83668 * 11 10 9 37 37 H 1.08001 * 120.00168 * 179.97438 * 12 11 10 38 38 H 1.07990 * 120.00071 * 359.97438 * 13 8 5 39 39 H 1.09001 * 109.47199 * 90.00473 * 17 16 14 40 40 H 1.09004 * 109.46966 * 209.99889 * 17 16 14 41 41 H 1.08996 * 109.47826 * 330.00006 * 17 16 14 42 42 H 1.08999 * 109.47129 * 209.99924 * 18 16 14 43 43 H 1.08999 * 109.47017 * 330.00085 * 18 16 14 44 44 H 0.96993 * 120.00349 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 1 1.2575 0.9330 -2.2906 7 6 3.4110 0.9810 -2.3224 8 6 1.9786 -0.5675 -3.6259 9 6 2.6375 -1.7767 -3.7468 10 6 2.5387 -2.5036 -4.9184 11 6 1.7884 -2.0169 -5.9725 12 6 1.1337 -0.8053 -5.8535 13 6 1.2290 -0.0803 -4.6803 14 6 2.0324 -0.7105 1.2304 15 8 2.7297 -1.6965 1.1191 16 7 1.7068 -0.2500 2.4545 17 6 0.8650 0.9414 2.5890 18 6 2.1948 -0.9410 3.6507 19 6 3.5225 -0.3580 4.0611 20 1 3.9589 0.4470 3.4884 21 6 4.1794 -0.8516 5.1682 22 7 5.3384 -0.3432 5.5261 23 14 3.4242 -2.2434 6.1590 24 1 3.8842 -3.5457 5.6136 25 1 3.8441 -2.1252 7.5785 26 1 1.9437 -2.1658 6.0727 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.4496 -1.4979 -1.4101 31 1 3.4861 1.5526 -1.3972 32 1 4.2359 0.2708 -2.3787 33 1 3.4574 1.6604 -3.1735 34 1 3.2264 -2.1553 -2.9245 35 1 3.0498 -3.4504 -5.0112 36 1 1.7133 -2.5836 -6.8888 37 1 0.5478 -0.4248 -6.6772 38 1 0.7175 0.8662 -4.5874 39 1 -0.1831 0.6438 2.6222 40 1 1.1229 1.4666 3.5087 41 1 1.0288 1.6002 1.7363 42 1 1.4767 -0.8155 4.4611 43 1 2.3155 -2.0023 3.4334 44 1 5.8004 -0.6902 6.3051 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112545252.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:01 Heat of formation + Delta-G solvation = -21.581600 kcal Electronic energy + Delta-G solvation = -23175.935262 eV Core-core repulsion = 19899.562115 eV Total energy + Delta-G solvation = -3276.373147 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.05671 -40.22758 -37.64854 -36.56840 -34.82573 -33.80283 -31.76857 -30.87973 -30.06485 -28.90650 -27.55730 -25.65139 -24.46729 -23.56231 -22.89281 -21.23584 -20.06957 -19.13009 -18.34625 -17.53349 -17.15625 -16.67856 -16.47922 -16.11796 -15.64533 -15.36483 -15.06325 -14.95367 -14.57940 -14.39201 -14.28818 -14.16536 -13.76666 -13.64773 -13.34414 -13.30562 -13.03533 -12.99534 -12.87229 -12.72374 -12.49020 -12.32438 -12.23240 -11.98507 -11.83147 -11.74015 -11.61614 -10.83201 -10.50842 -9.78051 -9.62978 -9.39599 -9.25706 -8.33864 -6.38771 0.44978 0.54103 1.31934 1.36848 1.45000 1.89599 2.27207 2.31198 2.90578 3.00570 3.21017 3.68479 3.71638 4.02096 4.08234 4.12792 4.20989 4.31861 4.36121 4.38389 4.46752 4.60912 4.65747 4.69288 4.72998 4.75476 4.85283 4.87288 4.91858 4.96282 4.99230 5.14472 5.20839 5.22885 5.33318 5.46965 5.59004 5.62910 5.66931 5.68283 6.05255 6.16367 6.26417 6.39506 6.62599 6.78869 7.22671 7.53262 8.83398 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.026060 B = 0.003390 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.202717 B = 8256.554477 C = 8557.312141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.082 3.918 3 H 0.111 0.889 4 N -0.679 5.679 5 C 0.132 3.868 6 H 0.076 0.924 7 C -0.136 4.136 8 C -0.097 4.097 9 C -0.119 4.119 10 C -0.133 4.133 11 C -0.126 4.126 12 C -0.124 4.124 13 C -0.116 4.116 14 C 0.500 3.500 15 O -0.580 6.580 16 N -0.609 5.609 17 C 0.075 3.925 18 C 0.225 3.775 19 C -0.535 4.535 20 H 0.026 0.974 21 C 0.009 3.991 22 N -0.947 5.947 23 Si 0.950 3.050 24 H -0.278 1.278 25 H -0.274 1.274 26 H -0.236 1.236 27 H 0.054 0.946 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.347 0.653 31 H 0.048 0.952 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.129 0.871 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.051 0.949 43 H 0.015 0.985 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.829 3.085 -21.424 26.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.031 4.031 3 H 0.128 0.872 4 N -0.311 5.311 5 C 0.023 3.977 6 H 0.094 0.906 7 C -0.194 4.194 8 C -0.097 4.097 9 C -0.137 4.137 10 C -0.151 4.151 11 C -0.144 4.144 12 C -0.142 4.142 13 C -0.134 4.134 14 C 0.288 3.712 15 O -0.459 6.459 16 N -0.342 5.342 17 C -0.067 4.067 18 C 0.102 3.898 19 C -0.574 4.574 20 H 0.044 0.956 21 C -0.189 4.189 22 N -0.587 5.587 23 Si 0.773 3.227 24 H -0.204 1.204 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.167 0.833 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.128 0.872 35 H 0.147 0.853 36 H 0.159 0.841 37 H 0.164 0.836 38 H 0.160 0.840 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.069 0.931 43 H 0.033 0.967 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.677 2.660 -21.176 25.902 hybrid contribution -0.025 -0.604 0.758 0.969 sum -14.702 2.056 -20.418 25.245 Atomic orbital electron populations 1.22632 0.92366 1.03363 1.05454 1.21386 0.95916 0.97914 0.87916 0.87178 1.60096 1.58838 1.09555 1.02638 1.20452 0.98317 0.92783 0.86117 0.90645 1.21816 0.96447 0.99461 1.01657 1.19948 0.98486 0.95468 0.95799 1.21144 0.99293 0.95266 0.98004 1.21393 0.99771 1.00396 0.93576 1.21474 0.97039 0.96765 0.99111 1.21451 0.99700 0.94952 0.98117 1.21280 0.98599 1.00661 0.92895 1.21356 0.79828 0.84749 0.85303 1.90617 1.39195 1.29201 1.86908 1.47930 1.50798 1.29768 1.05686 1.22128 0.94462 0.86471 1.03623 1.19294 0.93566 0.92697 0.84226 1.21584 1.05201 1.19154 1.11428 0.95576 1.25886 0.95061 0.99458 0.98499 1.70056 1.16670 1.44442 1.27569 0.85684 0.80737 0.78635 0.77676 1.20396 1.19916 1.15934 0.92709 0.88834 0.89248 0.83336 0.93245 0.94025 0.90496 0.87247 0.85339 0.84089 0.83567 0.84049 0.89716 0.91745 0.89382 0.93115 0.96659 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.47 8.78 71.98 0.63 -2.84 16 2 C 0.08 2.31 2.00 44.17 0.09 2.40 16 3 H 0.11 2.86 6.37 -2.39 -0.02 2.84 16 4 N -0.68 -19.27 4.94 -477.15 -2.36 -21.63 16 5 C 0.13 2.89 2.63 44.17 0.12 3.00 16 6 H 0.08 1.29 6.97 -2.39 -0.02 1.27 16 7 C -0.14 -3.25 9.37 71.98 0.67 -2.58 16 8 C -0.10 -2.03 4.71 -19.86 -0.09 -2.12 16 9 C -0.12 -2.83 9.01 22.27 0.20 -2.63 16 10 C -0.13 -2.67 10.05 22.27 0.22 -2.44 16 11 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 12 C -0.12 -1.82 10.05 22.27 0.22 -1.60 16 13 C -0.12 -1.90 9.67 22.27 0.22 -1.68 16 14 C 0.50 20.78 7.14 87.66 0.63 21.41 16 15 O -0.58 -30.60 16.01 -3.03 -0.05 -30.65 16 16 N -0.61 -24.96 2.86 -851.12 -2.43 -27.39 16 17 C 0.07 2.09 8.80 127.77 1.12 3.21 16 18 C 0.22 11.19 4.23 85.63 0.36 11.56 16 19 C -0.54 -32.33 9.94 25.60 0.25 -32.08 16 20 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 21 C 0.01 0.52 5.47 84.65 0.46 0.98 16 22 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 23 Si 0.95 45.42 27.47 68.60 1.88 47.30 16 24 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 25 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 26 H -0.24 -10.06 6.54 99.48 0.65 -9.41 16 27 H 0.05 1.16 8.13 -2.38 -0.02 1.14 16 28 H 0.09 1.57 4.53 -2.39 -0.01 1.56 16 29 H 0.09 1.24 7.43 -2.39 -0.02 1.23 16 30 H 0.35 9.75 7.74 -89.70 -0.69 9.05 16 31 H 0.05 1.25 7.43 -2.38 -0.02 1.24 16 32 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.11 3.10 7.73 -2.91 -0.02 3.08 16 35 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 36 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 37 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 38 H 0.14 1.63 8.04 -2.92 -0.02 1.61 16 39 H 0.08 1.75 6.95 -2.39 -0.02 1.74 16 40 H 0.06 1.94 8.07 -2.38 -0.02 1.92 16 41 H 0.09 1.94 6.01 -2.39 -0.01 1.93 16 42 H 0.05 2.29 7.13 -2.39 -0.02 2.28 16 43 H 0.02 0.83 6.85 -2.39 -0.02 0.81 16 44 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 Total: -1.00 -80.97 354.08 2.92 -78.05 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.24 Total: 22.42 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: 5.34 Total: -7.21 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -4.49 Total: -109.92 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.05 Total: -30.65 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.30 kcal Total: -80.97 2.92 -78.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112545252.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.470 kcal (2) G-P(sol) polarization free energy of solvation -80.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds