Wall clock time and date at job start Tue Mar 31 2020 07:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47273 * 2 1 4 4 N 1.46902 * 109.47127 * 120.00253 * 2 1 3 5 5 C 1.46900 * 110.99901 * 274.99868 * 4 2 1 6 6 H 1.09005 * 109.46955 * 34.99800 * 5 4 2 7 7 C 1.53005 * 109.47288 * 275.00059 * 5 4 2 8 8 C 1.50698 * 109.47230 * 155.00089 * 5 4 2 9 9 C 1.38233 * 119.99961 * 39.72772 * 8 5 4 10 10 C 1.38236 * 119.99647 * 179.81088 * 9 8 5 11 11 C 1.38230 * 120.00182 * 0.39662 * 10 9 8 12 12 C 1.38231 * 120.00335 * 359.85709 * 11 10 9 13 13 C 1.38237 * 119.99879 * 220.00299 * 8 5 4 14 14 C 1.50699 * 109.47369 * 239.99970 * 2 1 3 15 15 O 1.21280 * 120.00270 * 245.92475 * 14 2 1 16 16 N 1.34782 * 119.99862 * 66.19314 * 14 2 1 17 17 C 1.46497 * 120.00080 * 4.34063 * 16 14 2 18 18 C 1.46502 * 119.99799 * 184.33909 * 16 14 2 19 19 C 1.50693 * 109.47191 * 90.00364 * 18 16 14 20 20 H 1.08003 * 120.00134 * 359.97438 * 19 18 16 21 21 C 1.37875 * 119.99955 * 179.97438 * 19 18 16 22 22 N 1.31511 * 120.00054 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00168 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47070 * 59.99889 * 23 21 19 25 25 H 1.48504 * 109.47410 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47029 * 300.00108 * 23 21 19 27 27 H 1.08998 * 109.47082 * 69.20909 * 1 2 3 28 28 H 1.09000 * 109.47436 * 189.20792 * 1 2 3 29 29 H 1.08998 * 109.47383 * 309.20596 * 1 2 3 30 30 H 1.00903 * 111.00246 * 151.05238 * 4 2 1 31 31 H 1.09000 * 109.47179 * 179.97438 * 7 5 4 32 32 H 1.08995 * 109.46961 * 299.99780 * 7 5 4 33 33 H 1.09002 * 109.46867 * 60.00176 * 7 5 4 34 34 H 1.07998 * 119.99957 * 359.97438 * 9 8 5 35 35 H 1.08003 * 119.99923 * 180.23245 * 10 9 8 36 36 H 1.08010 * 120.00107 * 179.83263 * 11 10 9 37 37 H 1.07994 * 120.00833 * 179.97438 * 12 11 10 38 38 H 1.08007 * 120.00204 * 359.97172 * 13 8 5 39 39 H 1.08993 * 109.47196 * 95.83403 * 17 16 14 40 40 H 1.09000 * 109.47320 * 215.83819 * 17 16 14 41 41 H 1.09005 * 109.46868 * 335.83434 * 17 16 14 42 42 H 1.09007 * 109.46569 * 210.00290 * 18 16 14 43 43 H 1.08996 * 109.47108 * 329.99862 * 18 16 14 44 44 H 0.97004 * 120.00202 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0824 0.2225 2.3469 6 1 1.2575 0.9329 2.2907 7 6 3.4111 0.9808 2.3224 8 6 1.9786 -0.5677 3.6259 9 6 2.6282 -1.7823 3.7425 10 6 2.5361 -2.5053 4.9172 11 6 1.7878 -2.0176 5.9721 12 6 1.1338 -0.8055 5.8536 13 6 1.2290 -0.0807 4.6803 14 6 2.0323 -0.7104 -1.2304 15 8 2.6384 -1.7553 -1.1224 16 7 1.8128 -0.1817 -2.4506 17 6 1.1703 1.1288 -2.5763 18 6 2.2166 -0.9178 -3.6513 19 6 1.0816 -1.7985 -4.1061 20 1 0.1524 -1.8093 -3.5557 21 6 1.2293 -2.5905 -5.2249 22 7 2.3609 -2.5778 -5.8949 23 14 -0.1774 -3.6828 -5.7884 24 1 -1.3629 -2.8435 -6.0970 25 1 0.2319 -4.4288 -7.0055 26 1 -0.5194 -4.6451 -4.7102 27 1 -0.3633 0.3648 -0.9607 28 1 -0.3634 -1.0144 0.1644 29 1 -0.3634 0.6496 0.7963 30 1 2.9173 -1.1205 1.0288 31 1 3.4575 1.6601 3.1736 32 1 4.2359 0.2705 2.3786 33 1 3.4862 1.5524 1.3973 34 1 3.2099 -2.1651 2.9170 35 1 3.0468 -3.4524 5.0097 36 1 1.7136 -2.5838 6.8889 37 1 0.5488 -0.4246 6.6775 38 1 0.7182 0.8664 4.5877 39 1 1.9341 1.8994 -2.6805 40 1 0.5259 1.1348 -3.4554 41 1 0.5728 1.3274 -1.6865 42 1 2.4683 -0.2117 -4.4427 43 1 3.0864 -1.5342 -3.4241 44 1 2.4647 -3.1347 -6.6823 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112545297.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:12 Heat of formation + Delta-G solvation = -3.691964 kcal Electronic energy + Delta-G solvation = -23154.607670 eV Core-core repulsion = 19879.010276 eV Total energy + Delta-G solvation = -3275.597394 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.83606 -39.08127 -36.50381 -34.87078 -33.07938 -32.28448 -30.93794 -29.74107 -28.28172 -27.46275 -26.02353 -24.31553 -23.37075 -22.63963 -21.64070 -20.29515 -18.61861 -17.16391 -16.51176 -16.36298 -16.07576 -15.18729 -15.06509 -14.81670 -14.53872 -14.08210 -14.01629 -13.73100 -13.39927 -13.31366 -13.00097 -12.58230 -12.49172 -12.27609 -12.15478 -12.01418 -11.87793 -11.62599 -11.33836 -11.22436 -11.10708 -10.94823 -10.83714 -10.77994 -10.54879 -10.15192 -9.63827 -8.93514 -8.87289 -8.74651 -8.43188 -8.34617 -7.65020 -6.04081 -4.09048 1.33097 1.39841 3.32310 3.34889 3.37098 3.42887 3.69673 3.86629 4.30273 4.45765 4.68129 4.82068 4.94479 4.98806 5.08558 5.12611 5.14602 5.27043 5.30839 5.41061 5.42003 5.50332 5.58096 5.63787 5.68909 5.88395 5.90813 5.94054 5.94385 5.99782 6.06340 6.18836 6.41910 6.48316 6.51321 6.58251 6.94121 6.99068 7.16072 7.42910 7.47964 7.53927 7.92256 8.23240 8.40017 8.89063 9.06360 9.56118 11.03988 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.023010 B = 0.003418 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.557679 B = 8190.207863 C = 8628.429089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.068 3.932 3 H 0.062 0.938 4 N -0.663 5.663 5 C 0.121 3.879 6 H 0.086 0.914 7 C -0.179 4.179 8 C -0.062 4.062 9 C -0.095 4.095 10 C -0.121 4.121 11 C -0.128 4.128 12 C -0.124 4.124 13 C -0.118 4.118 14 C 0.504 3.496 15 O -0.535 6.535 16 N -0.599 5.599 17 C 0.069 3.931 18 C 0.245 3.755 19 C -0.527 4.527 20 H 0.057 0.943 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.898 3.102 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.276 1.276 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.355 0.645 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.044 0.956 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.031 0.969 43 H 0.044 0.956 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.516 9.471 19.988 22.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.045 4.045 3 H 0.079 0.921 4 N -0.298 5.298 5 C 0.011 3.989 6 H 0.104 0.896 7 C -0.238 4.238 8 C -0.063 4.063 9 C -0.113 4.113 10 C -0.139 4.139 11 C -0.146 4.146 12 C -0.142 4.142 13 C -0.136 4.136 14 C 0.290 3.710 15 O -0.412 6.412 16 N -0.331 5.331 17 C -0.075 4.075 18 C 0.126 3.874 19 C -0.566 4.566 20 H 0.075 0.925 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.726 3.274 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.201 1.201 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.178 0.822 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.142 0.858 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.062 0.938 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.049 0.951 43 H 0.062 0.938 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.694 8.576 19.983 21.812 hybrid contribution -0.069 -0.060 -0.684 0.690 sum -1.764 8.516 19.299 21.168 Atomic orbital electron populations 1.21928 0.92704 1.03509 1.01891 1.21456 0.97369 0.96234 0.89478 0.92076 1.60485 1.35369 1.31152 1.02751 1.20512 0.97353 0.92410 0.88668 0.89587 1.22512 0.98022 1.01067 1.02204 1.19751 0.96773 0.95314 0.94423 1.21009 0.99016 0.94129 0.97194 1.21164 0.99361 0.99852 0.93573 1.21101 0.98214 0.96451 0.98835 1.21046 1.00099 0.95393 0.97651 1.20963 0.99304 0.99993 0.93376 1.20268 0.80466 0.85770 0.84512 1.90654 1.41442 1.23174 1.85912 1.48088 1.58726 1.19016 1.07314 1.21949 0.97559 0.84943 1.03043 1.19283 0.96691 0.91409 0.79984 1.21398 0.99940 1.24472 1.10809 0.92457 1.24935 0.96008 0.96760 0.96376 1.69924 1.24552 1.40217 1.18733 0.86554 0.82148 0.80684 0.78020 1.20233 1.21177 1.20124 0.90874 0.91095 0.92507 0.82199 0.91882 0.92025 0.92254 0.85846 0.86256 0.86515 0.86423 0.86401 0.93792 0.90897 0.91090 0.95053 0.93792 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.83 37.15 0.33 -1.65 16 2 C 0.07 1.03 2.00 -68.87 -0.14 0.89 16 3 H 0.06 0.79 6.69 -51.93 -0.35 0.45 16 4 N -0.66 -9.65 5.35 -102.17 -0.55 -10.19 16 5 C 0.12 1.37 2.60 -68.86 -0.18 1.19 16 6 H 0.09 0.90 7.07 -51.93 -0.37 0.53 16 7 C -0.18 -1.81 9.13 37.16 0.34 -1.47 16 8 C -0.06 -0.72 4.96 -104.63 -0.52 -1.24 16 9 C -0.10 -1.16 9.33 -39.58 -0.37 -1.53 16 10 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 11 C -0.13 -1.27 10.05 -39.59 -0.40 -1.67 16 12 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 13 C -0.12 -1.22 9.67 -39.58 -0.38 -1.60 16 14 C 0.50 10.43 6.98 -10.98 -0.08 10.36 16 15 O -0.53 -13.35 15.28 5.56 0.08 -13.27 16 16 N -0.60 -12.64 2.86 -182.96 -0.52 -13.17 16 17 C 0.07 1.08 9.75 59.85 0.58 1.66 16 18 C 0.25 6.45 5.22 -5.20 -0.03 6.43 16 19 C -0.53 -15.03 9.39 -34.44 -0.32 -15.35 16 20 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 22 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 23 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 27 H 0.07 1.00 5.42 -51.93 -0.28 0.72 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 0.63 7.57 -51.93 -0.39 0.24 16 30 H 0.36 5.66 6.63 -39.29 -0.26 5.40 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 33 H 0.06 0.60 7.43 -51.93 -0.39 0.21 16 34 H 0.12 1.55 7.24 -52.49 -0.38 1.17 16 35 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 36 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 37 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.12 0.99 8.04 -52.48 -0.42 0.57 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 41 H 0.07 0.90 4.11 -51.93 -0.21 0.69 16 42 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 43 H 0.04 1.30 7.36 -51.93 -0.38 0.92 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 357.67 15.07 5.39 5.39 Total: -1.00 -33.00 357.67 -8.71 -41.72 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.78 Total: 4.22 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -2.05 Total: -5.65 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: -0.33 Total: -49.38 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.08 Total: -13.27 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.00 -8.71 -41.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112545297.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.024 kcal (2) G-P(sol) polarization free energy of solvation -33.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds