Wall clock time and date at job start Tue Mar 31 2020 07:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47273 * 2 1 4 4 N 1.46902 * 109.47127 * 120.00253 * 2 1 3 5 5 C 1.46900 * 110.99901 * 274.99868 * 4 2 1 6 6 H 1.09005 * 109.46955 * 34.99800 * 5 4 2 7 7 C 1.53005 * 109.47288 * 275.00059 * 5 4 2 8 8 C 1.50698 * 109.47230 * 155.00089 * 5 4 2 9 9 C 1.38233 * 119.99961 * 39.72772 * 8 5 4 10 10 C 1.38236 * 119.99647 * 179.81088 * 9 8 5 11 11 C 1.38230 * 120.00182 * 0.39662 * 10 9 8 12 12 C 1.38231 * 120.00335 * 359.85709 * 11 10 9 13 13 C 1.38237 * 119.99879 * 220.00299 * 8 5 4 14 14 C 1.50699 * 109.47369 * 239.99970 * 2 1 3 15 15 O 1.21280 * 120.00270 * 245.92475 * 14 2 1 16 16 N 1.34782 * 119.99862 * 66.19314 * 14 2 1 17 17 C 1.46497 * 120.00080 * 4.34063 * 16 14 2 18 18 C 1.46502 * 119.99799 * 184.33909 * 16 14 2 19 19 C 1.50693 * 109.47191 * 90.00364 * 18 16 14 20 20 H 1.08003 * 120.00134 * 359.97438 * 19 18 16 21 21 C 1.37875 * 119.99955 * 179.97438 * 19 18 16 22 22 N 1.31511 * 120.00054 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00168 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47070 * 59.99889 * 23 21 19 25 25 H 1.48504 * 109.47410 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47029 * 300.00108 * 23 21 19 27 27 H 1.08998 * 109.47082 * 69.20909 * 1 2 3 28 28 H 1.09000 * 109.47436 * 189.20792 * 1 2 3 29 29 H 1.08998 * 109.47383 * 309.20596 * 1 2 3 30 30 H 1.00903 * 111.00246 * 151.05238 * 4 2 1 31 31 H 1.09000 * 109.47179 * 179.97438 * 7 5 4 32 32 H 1.08995 * 109.46961 * 299.99780 * 7 5 4 33 33 H 1.09002 * 109.46867 * 60.00176 * 7 5 4 34 34 H 1.07998 * 119.99957 * 359.97438 * 9 8 5 35 35 H 1.08003 * 119.99923 * 180.23245 * 10 9 8 36 36 H 1.08010 * 120.00107 * 179.83263 * 11 10 9 37 37 H 1.07994 * 120.00833 * 179.97438 * 12 11 10 38 38 H 1.08007 * 120.00204 * 359.97172 * 13 8 5 39 39 H 1.08993 * 109.47196 * 95.83403 * 17 16 14 40 40 H 1.09000 * 109.47320 * 215.83819 * 17 16 14 41 41 H 1.09005 * 109.46868 * 335.83434 * 17 16 14 42 42 H 1.09007 * 109.46569 * 210.00290 * 18 16 14 43 43 H 1.08996 * 109.47108 * 329.99862 * 18 16 14 44 44 H 0.97004 * 120.00202 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0824 0.2225 2.3469 6 1 1.2575 0.9329 2.2907 7 6 3.4111 0.9808 2.3224 8 6 1.9786 -0.5677 3.6259 9 6 2.6282 -1.7823 3.7425 10 6 2.5361 -2.5053 4.9172 11 6 1.7878 -2.0176 5.9721 12 6 1.1338 -0.8055 5.8536 13 6 1.2290 -0.0807 4.6803 14 6 2.0323 -0.7104 -1.2304 15 8 2.6384 -1.7553 -1.1224 16 7 1.8128 -0.1817 -2.4506 17 6 1.1703 1.1288 -2.5763 18 6 2.2166 -0.9178 -3.6513 19 6 1.0816 -1.7985 -4.1061 20 1 0.1524 -1.8093 -3.5557 21 6 1.2293 -2.5905 -5.2249 22 7 2.3609 -2.5778 -5.8949 23 14 -0.1774 -3.6828 -5.7884 24 1 -1.3629 -2.8435 -6.0970 25 1 0.2319 -4.4288 -7.0055 26 1 -0.5194 -4.6451 -4.7102 27 1 -0.3633 0.3648 -0.9607 28 1 -0.3634 -1.0144 0.1644 29 1 -0.3634 0.6496 0.7963 30 1 2.9173 -1.1205 1.0288 31 1 3.4575 1.6601 3.1736 32 1 4.2359 0.2705 2.3786 33 1 3.4862 1.5524 1.3973 34 1 3.2099 -2.1651 2.9170 35 1 3.0468 -3.4524 5.0097 36 1 1.7136 -2.5838 6.8889 37 1 0.5488 -0.4246 6.6775 38 1 0.7182 0.8664 4.5877 39 1 1.9341 1.8994 -2.6805 40 1 0.5259 1.1348 -3.4554 41 1 0.5728 1.3274 -1.6865 42 1 2.4683 -0.2117 -4.4427 43 1 3.0864 -1.5342 -3.4241 44 1 2.4647 -3.1347 -6.6823 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112545297.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:11 Heat of formation + Delta-G solvation = -24.661877 kcal Electronic energy + Delta-G solvation = -23155.516994 eV Core-core repulsion = 19879.010276 eV Total energy + Delta-G solvation = -3276.506718 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.13406 -40.16707 -37.61869 -36.62709 -34.87675 -33.70389 -31.72792 -30.75095 -29.71541 -28.86025 -27.50751 -25.78901 -24.66989 -23.57668 -22.92464 -21.19558 -20.10388 -18.68447 -18.31696 -17.68646 -17.22285 -16.68828 -16.27877 -16.03332 -15.93889 -15.57534 -15.08083 -14.71153 -14.41550 -14.25266 -14.14690 -14.10581 -13.82446 -13.56178 -13.39521 -13.18459 -13.12815 -13.01151 -12.90625 -12.73368 -12.56623 -12.27372 -12.24468 -12.11200 -11.76422 -11.70331 -11.63641 -10.65353 -10.51055 -9.73562 -9.61562 -9.46043 -9.33257 -8.23521 -6.38609 0.53358 0.59566 1.35827 1.40530 1.47553 1.77265 2.26741 2.41222 2.91942 3.06045 3.21690 3.61896 3.82624 4.02552 4.11197 4.19764 4.23154 4.32336 4.33236 4.38388 4.38534 4.62512 4.68337 4.70448 4.74972 4.82043 4.87576 4.91723 4.98371 5.00476 5.15625 5.21258 5.21713 5.26181 5.36675 5.53902 5.64435 5.70657 5.72225 5.82218 6.04729 6.08172 6.21399 6.29318 6.68750 6.77442 7.26374 7.44263 8.83438 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.023010 B = 0.003418 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.557679 B = 8190.207863 C = 8628.429089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.083 3.917 3 H 0.095 0.905 4 N -0.677 5.677 5 C 0.124 3.876 6 H 0.106 0.894 7 C -0.174 4.174 8 C -0.075 4.075 9 C -0.120 4.120 10 C -0.136 4.136 11 C -0.133 4.133 12 C -0.125 4.125 13 C -0.121 4.121 14 C 0.493 3.507 15 O -0.591 6.591 16 N -0.606 5.606 17 C 0.063 3.937 18 C 0.259 3.741 19 C -0.544 4.544 20 H 0.054 0.946 21 C 0.007 3.993 22 N -0.929 5.929 23 Si 0.967 3.033 24 H -0.258 1.258 25 H -0.278 1.278 26 H -0.279 1.279 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.095 0.905 30 H 0.343 0.657 31 H 0.080 0.920 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.127 0.873 36 H 0.139 0.861 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.107 0.893 42 H 0.023 0.977 43 H -0.003 1.003 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.828 11.407 21.778 24.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.030 4.030 3 H 0.112 0.888 4 N -0.311 5.311 5 C 0.015 3.985 6 H 0.124 0.876 7 C -0.233 4.233 8 C -0.076 4.076 9 C -0.138 4.138 10 C -0.154 4.154 11 C -0.151 4.151 12 C -0.143 4.143 13 C -0.140 4.140 14 C 0.281 3.719 15 O -0.471 6.471 16 N -0.337 5.337 17 C -0.078 4.078 18 C 0.138 3.862 19 C -0.583 4.583 20 H 0.072 0.928 21 C -0.192 4.192 22 N -0.569 5.569 23 Si 0.792 3.208 24 H -0.182 1.182 25 H -0.203 1.203 26 H -0.205 1.205 27 H 0.095 0.905 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.164 0.836 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.123 0.877 35 H 0.144 0.856 36 H 0.157 0.843 37 H 0.163 0.837 38 H 0.160 0.840 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.125 0.875 42 H 0.041 0.959 43 H 0.015 0.985 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.035 10.572 21.789 24.552 hybrid contribution 0.701 -0.657 -1.174 1.517 sum -3.334 9.915 20.615 23.117 Atomic orbital electron populations 1.21936 0.91234 1.02887 1.03520 1.21430 0.98144 0.96768 0.86660 0.88781 1.60529 1.34834 1.32391 1.03332 1.20604 0.98583 0.92105 0.87241 0.87627 1.22458 0.96927 1.00871 1.03054 1.19862 0.97367 0.95232 0.95116 1.21040 1.00070 0.95288 0.97411 1.21364 0.99987 1.00315 0.93707 1.21421 0.97543 0.96915 0.99187 1.21429 0.99662 0.94998 0.98236 1.21260 0.98770 1.00922 0.93001 1.21365 0.79294 0.85364 0.85834 1.90620 1.43786 1.25884 1.86846 1.48096 1.58978 1.20584 1.06054 1.22259 0.98402 0.82540 1.04621 1.18738 0.94647 0.90973 0.81844 1.21681 1.00253 1.25241 1.11079 0.92754 1.25869 0.98721 0.98116 0.96455 1.70046 1.26550 1.41069 1.19197 0.85472 0.79268 0.78666 0.77441 1.18241 1.20310 1.20463 0.90501 0.93692 0.88677 0.83575 0.90098 0.93380 0.92031 0.87665 0.85550 0.84348 0.83745 0.84019 0.91342 0.91495 0.87461 0.95868 0.98535 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 8.83 71.98 0.64 -2.82 16 2 C 0.08 2.38 2.00 44.17 0.09 2.46 16 3 H 0.09 2.11 6.69 -2.39 -0.02 2.09 16 4 N -0.68 -19.44 5.35 -477.15 -2.55 -21.99 16 5 C 0.12 2.58 2.60 44.17 0.11 2.70 16 6 H 0.11 1.78 7.07 -2.38 -0.02 1.76 16 7 C -0.17 -3.23 9.13 71.98 0.66 -2.58 16 8 C -0.08 -1.66 4.96 -19.87 -0.10 -1.75 16 9 C -0.12 -2.98 9.33 22.27 0.21 -2.77 16 10 C -0.14 -2.95 10.05 22.27 0.22 -2.72 16 11 C -0.13 -2.40 10.05 22.27 0.22 -2.17 16 12 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 13 C -0.12 -2.16 9.67 22.27 0.22 -1.95 16 14 C 0.49 20.76 6.98 87.66 0.61 21.38 16 15 O -0.59 -31.16 15.28 -3.03 -0.05 -31.21 16 16 N -0.61 -25.83 2.86 -851.14 -2.43 -28.26 16 17 C 0.06 1.86 9.75 127.77 1.25 3.11 16 18 C 0.26 14.23 5.22 85.63 0.45 14.68 16 19 C -0.54 -31.78 9.39 25.60 0.24 -31.54 16 20 H 0.05 3.13 7.81 -2.91 -0.02 3.10 16 21 C 0.01 0.43 5.46 84.65 0.46 0.89 16 22 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 23 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 24 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 26 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 27 H 0.08 1.86 5.42 -2.39 -0.01 1.85 16 28 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.09 1.68 7.57 -2.39 -0.02 1.66 16 30 H 0.34 11.43 6.63 -89.69 -0.59 10.84 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.01 8.13 -2.39 -0.02 0.99 16 33 H 0.06 1.10 7.43 -2.39 -0.02 1.09 16 34 H 0.11 2.90 7.24 -2.91 -0.02 2.87 16 35 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 36 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 37 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.14 1.79 8.04 -2.91 -0.02 1.76 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.07 2.06 8.11 -2.39 -0.02 2.04 16 41 H 0.11 2.35 4.11 -2.38 -0.01 2.34 16 42 H 0.02 1.29 8.07 -2.38 -0.02 1.27 16 43 H 0.00 -0.22 7.36 -2.39 -0.02 -0.24 16 44 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -75.76 357.67 3.17 -72.59 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.39 Total: 23.01 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: 5.50 Total: -4.94 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -4.70 Total: -106.91 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.05 Total: -31.21 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -75.76 3.17 -72.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112545297.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.924 kcal (2) G-P(sol) polarization free energy of solvation -75.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds